prot_S-firma_M_contig93.20251.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig93.20251.1
Unique Nameprot_S-firma_M_contig93.20251.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length310
Homology
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BLAST of mRNA_S-firma_M_contig93.20251.1 vs. uniprot
Match: D7FV38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV38_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 7.440e-110
Identity = 181/266 (68.05%), Postives = 193/266 (72.56%), Query Frame = 0 
Query:    1 MARR-VETGVGSWAALVLLLVSSSVVLGLEWNKECDGGLRKWLLTTVVVTAICGVLGALFHGRGDGTRPSRFLDEDDDDVWGVDDDSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLKATPALKAEEGRAXXXXXXXXXXXXXXXXASGGEEGEPPRRDSMGDESIVSGVPSSISYRLASQSSSLQHRYFGPGPKVFPDAIFFILVVSQWFLAGWSVVGAALYFRLFNGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSG 265
            MARR ++TGVGSWAALVLLLVSSSVVLGL+WNKECDGGLR WLLTTV VTAIC  LGA+FHGRG+GTRPSRFLD  DDD WGVDDDS+                                  ++ TP  K EEG                   +GGEE    RRDSMGDESIVSGVPS+IS+RLA+QSSSLQHRYFGPGPKVFPD IFFILVVSQWFLAGWSVVGAALYFRLF GNRTCSPLLRHWTLLVVIIGFLSCLLAVC  G
Sbjct:    1 MARRGMDTGVGSWAALVLLLVSSSVVLGLQWNKECDGGLRTWLLTTVCVTAICSGLGAIFHGRGNGTRPSRFLD--DDDAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEDANGNGKRSD-IRITPPFKMEEGGGSGGKGVNGGGM------AGGEE----RRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRTCSPLLRHWTLLVVIIGFLSCLLAVCSWG 253
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BLAST of mRNA_S-firma_M_contig93.20251.1 vs. uniprot
Match: A0A6H5K0Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Y0_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 4.730e-99
Identity = 168/257 (65.37%), Postives = 181/257 (70.43%), Query Frame = 0 
Query:   54 VLGALFHGRGDGTRPSRFLDEDDDDVWGVDDDSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLKATPALKAEEGRAXXXXXXXXXXXXXXXXASGGEEGEPPRRDSMGDESIVSGVPSSISYRLASQSSSLQHRYFGPGPKVFPDAIFFILVVSQWFLAGWSVVGAALYFRLFNGNRTCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRRR-RNGGSERDRFQGDVPSSSDGSGSSNNPGLM 309
            +LGA FHGRGDGTRPSRFLD   DD WGVDDDS+                               G  ++ TP  K EEG          XX       +GGEE    RRDSMGDESIVSGVPS+IS+RLA+QSSSLQHRYFGPGPKVFPD IFFILVVSQWFLAGWSVVGAALYFRLF GNR CSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSR R RNG  ERD+F  D+PSSSD + + N PG+M
Sbjct:    1 MLGATFHGRGDGTRPSRFLD---DDAWGVDDDSINVSVSSAAGGTGGRASPPEMGPEHTNGN---GSDIRITPPFKMEEGGGDGGKRVNGXXM------AGGEE----RRDSMGDESIVSGVPSTISHRLAAQSSSLQHRYFGPGPKVFPDTIFFILVVSQWFLAGWSVVGAALYFRLFTGNRMCSPLLRHWTLLVVIIGFLSCLLAVCYSGIMCCMLGAPFSRSRGRNGSGERDQFHADLPSSSDSTSTGNEPGMM 241
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig93.20251.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FV38_ECTSI7.440e-11068.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Y0_9PHAE4.730e-9965.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 230..248
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..61
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 274..309
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 249..273
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 205..229
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..42
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..27
score: 0.745
NoneNo IPR availableTMHMMTMhelixcoord: 7..26
NoneNo IPR availableTMHMMTMhelixcoord: 249..271
NoneNo IPR availableTMHMMTMhelixcoord: 41..60
NoneNo IPR availableTMHMMTMhelixcoord: 207..229

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig93contigS-firma_M_contig93:24956..30347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig93.20251.1mRNA_S-firma_M_contig93.20251.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig93 23108..30824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig93.20251.1 ID=prot_S-firma_M_contig93.20251.1|Name=mRNA_S-firma_M_contig93.20251.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=310bp
MARRVETGVGSWAALVLLLVSSSVVLGLEWNKECDGGLRKWLLTTVVVTA
ICGVLGALFHGRGDGTRPSRFLDEDDDDVWGVDDDSVGVSVSSSAGGGGA
GMGLGSTENNSSSSSRGEGGGLKATPALKAEEGRAGREARGAAGAEAANG
AASGGEEGEPPRRDSMGDESIVSGVPSSISYRLASQSSSLQHRYFGPGPK
VFPDAIFFILVVSQWFLAGWSVVGAALYFRLFNGNRTCSPLLRHWTLLVV
IIGFLSCLLAVCYSGIMCCMLGAPFSRRRRNGGSERDRFQGDVPSSSDGS
GSSNNPGLM*
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