prot_S-firma_M_contig9288.20238.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9288.20238.1
Unique Nameprot_S-firma_M_contig9288.20238.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length540
Homology
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BLAST of mRNA_S-firma_M_contig9288.20238.1 vs. uniprot
Match: A0A6H5JZR4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR4_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.220e-47
Identity = 116/237 (48.95%), Postives = 131/237 (55.27%), Query Frame = 0 
Query:  314 DRYIRLAGAHVTAFLRTALLMVHVCMEAPSPLQQGETQAAPPLPPPRGAGSESVVEGSGGKSPAAPAWADGAAARLPTADDKFLPLCRFFGFPSSAEALLAEPGLVDAARRWLACVADPAAFRLARFLPTAAETSTSRSHVSTADWVLQSRRREVVSRRLFDFPSPLKIELVRLPHAYTELHAQVSTHNNAGSGGVEGGAAGAAGADR-----------GGHPAVCLVCGEVLDASG 539
            DRY+R+AG HVT FLRTALLMVH+CM+ PS       +A+                GS G          G    LP+ADD F PLCRFFGFP+SAEALLAEPGL+DAARRWLACV+          LP            +T   +L   RRE V RRLFDFPSP+KI+LVRLPHAYTELHAQVS+                                 GHPAVCLVCGEVLDASG
Sbjct:   26 DRYVRVAGPHVTVFLRTALLMVHICMQPPSSSSLDPEEAS------------GTAGGSDGLEEKVANNGSGRLGLLPSADDAFSPLCRFFGFPTSAEALLAEPGLLDAARRWLACVSGSETVLGPGALPADGGPVVG----NTVGSLLLRLRRENVCRRLFDFPSPVKIDLVRLPHAYTELHAQVSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGHPAVCLVCGEVLDASG 246
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BLAST of mRNA_S-firma_M_contig9288.20238.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.490e-11
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = 0 
Query:   84 EQLGDLDRPLVATKAMEMLGTALVVLPAGDATGARHCVGALCLIRVLQVLSVPRFKEQQDKLEVLEVESLFLD 156
            E+LG LDRPL+   AME LG ALVVLPAGD  GA  CVGALCL+RVLQVL+   F++Q +       E+LFLD
Sbjct: 2124 EELG-LDRPLLLAGAMETLGAALVVLPAGDTQGAMQCVGALCLVRVLQVLAAFWFQDQHNGGRDAVAEALFLD 2195
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9288.20238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZR4_9PHAE2.220e-4748.95E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
D7G2M8_ECTSI3.490e-1160.27E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9288contigS-firma_M_contig9288:355..4190 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9288.20238.1mRNA_S-firma_M_contig9288.20238.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9288 355..4190 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9288.20238.1 ID=prot_S-firma_M_contig9288.20238.1|Name=mRNA_S-firma_M_contig9288.20238.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=540bp
QVPPHAGARAAMDASEGGPAEEATGQAAAVGAAAAAAGPPAAAAPGAGGE
VDIVEVLLASASATLESVGLQLEQFNPAARAAEEQLGDLDRPLVATKAME
MLGTALVVLPAGDATGARHCVGALCLIRVLQVLSVPRFKEQQDKLEVLEV
ESLFLDGESRGAEGRGGLVVAGGGGGAGGGHGGENDSTSGLESPATAEAS
SAASAPSGGGRSRRIVPRDHHFLFWGGDSSSDGGGGGGGGDPLQLPGGRR
AAAERVQAFSVRADDYSADKVEDEDVGKLPAPSAMAVTPRGGESTDNAAP
ACGGGGGDGGGVSDRYIRLAGAHVTAFLRTALLMVHVCMEAPSPLQQGET
QAAPPLPPPRGAGSESVVEGSGGKSPAAPAWADGAAARLPTADDKFLPLC
RFFGFPSSAEALLAEPGLVDAARRWLACVADPAAFRLARFLPTAAETSTS
RSHVSTADWVLQSRRREVVSRRLFDFPSPLKIELVRLPHAYTELHAQVST
HNNAGSGGVEGGAAGAAGADRGGHPAVCLVCGEVLDASGS
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