prot_S-firma_M_contig9287.20237.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9287.20237.1
Unique Nameprot_S-firma_M_contig9287.20237.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length583
Homology
BLAST of mRNA_S-firma_M_contig9287.20237.1 vs. uniprot
Match: D7FQX1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX1_ECTSI)

HSP 1 Score: 387 bits (994), Expect = 1.070e-120
Identity = 364/651 (55.91%), Postives = 383/651 (58.83%), Query Frame = 0
Query:    1 LGSRRLVAIRGAGRRVRIFRLLGRSYLQRALGRNHLQALVHTRQAYPPKAMPCTLLLASDPLPSGGMKAILHPLERGGR---DSPTRADSTASTGGGRPASPAVRARGSAGVAXXXXXXXXXXXXXEEAGPLVGVSVVMDCRVACTVELLWDVDLTLLGREMGLHPKLHLLPASTGGDGSS-----RSNAINAIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVANLSSLAGDLWSSVVSASGRLGRTAGSGGRWGRRVAAGAGAPNDSSA-----------------------------PSARVQQGQDLRGGDSGANESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPVGS--RSWAASLGLRKSSALNGAAGANGGADGADEAGV--TVGQILGLNGSXXXXXXXXXXXXXXXXXXXVPGARM-GLCGKRTVPRALSAGGNRVFETLPGESYFRGRPQSGAWAAGXXXXXXXXXXTXXXXXVFAGXXXXXXXXG--------------------------GRRRWPRVGDSVRAGRCSLAIVIRPAAGAENGDWSGWRHRPTHRVTRQVLLVQLTERSPAAGSGTASQQAPSARCLRHLVAISKGGGQGDAEAIYSFSEV 583
            LGSRRLVAIRGAGRRVRIFRLLGR+YL          ALVHTRQAYPPK MPC+LL+ASDP    G+KAILHP + G     D P                 A+ AR                    EAGPLVGVSVV+DCRVACTVELLWDVDLTLLGREMGLHPKLHLLPASTG  GS                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  V++LSSL G+ W+S VSAS RL R      RWG RVA   GAP DSS+                             PS  V +    RG         XXXXXXXXXXXXXXXXXXX                           +G  G   RSWAASLGLRKSS  N      GG DG+D AG   TVGQ LG            XXXXXXXXXXX PG  M GLCGKRTVPRALSAGG RVF TLPGESYFRGR QSG W AG          T        GXXXXXX  G                          G R WPRVGDSVRAGRCSLAIVIRPAAG E GDW+GWRHRPTHRVTRQVLLVQLTERS A   G  SQQAPSARCLRHLVA+SKGG  GD E+IYSF+EV
Sbjct:   47 LGSRRLVAIRGAGRRVRIFRLLGRNYLXXXXXXXXXXALVHTRQAYPPKTMPCSLLVASDP---DGVKAILHPRDSGDDIQVDPPXXXXXXXXXXXXXXXXGALGARA-------------------EAGPLVGVSVVLDCRVACTVELLWDVDLTLLGREMGLHPKLHLLPASTGAGGSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVSSLSSLPGNAWASAVSASRRLFRAGRE--RWGSRVA---GAPPDSSSRPLGSRGPGRXXXXXXXXXXXXXXXXSGYPSNDVDEEMGGRGVGGALGXXXXXXXXXXXXXXXXXXXXXXDDNLGATAAEAVLASLDGQGARRAGTGNGGSGGAGRSWAASLGLRKSSVFNA-----GGGDGSDAAGAGGTVGQALGFX----------XXXXXXXXXXXXPGVGMIGLCGKRTVPRALSAGGGRVFTTLPGESYFRGRQQSGEWNAGATA-------TSAAGAAKTGXXXXXXVDGRATSAVSAFVXXXXXXXXXXERRPAAGGRDWPRVGDSVRAGRCSLAIVIRPAAGGETGDWAGWRHRPTHRVTRQVLLVQLTERS-AGADGAPSQQAPSARCLRHLVAMSKGG-DGDPESIYSFAEV 646          
BLAST of mRNA_S-firma_M_contig9287.20237.1 vs. uniprot
Match: A0A6H5K7X0_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X0_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 4.760e-114
Identity = 332/637 (52.12%), Postives = 355/637 (55.73%), Query Frame = 0
Query:    1 LGSRRLVAIRGAGRRVRIFRLLGRSYLQRALGRNHLQALVHTRQAYPPKAMPCTLLLASDPLPSGGMKAILHPLERGGRDSPTRADSTASTGGGRPASPAVRARGSAGVAXXXXXXXXXXXXXE-EAGPLVGVSVVMDCRVACTVELLWDVDLTLLGREMGLHPKLHLLPASTGGDGSSRSNAINAIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVANLSSLAGDLWSSVVSASGRLGRTAGSGGRWGRRVAAGAGAPNDSSA-----------------------------PSARVQQGQDLRGGDSGANESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPVGS----RSWAASLGLRKSSALNGAAGANGGADGADEAGV--TVGQILGLNGSXXXXXXXXXXXXXXXXXXXVPGARMGLCGKRTVPRALSAGGNRVFETLPGESYFRGRPQSGAWAAGXXXXXXXXXXTXXXXX------------------VFAGXXXXXXXXGGRRRWPRVGDSVRAGRCSLAIVIRPAAGAENGDWSGWRHRPTHRVTRQVLLVQLTERSPAAGSGTASQQAPSARCLRHLVAISKGGGQGDAEAIYSFSEV 583
            LGSRRLVAIRGAGRRVRIFRLLGR+Y           ALVHTRQAYPPK MPC+LL+ASDP   GG+KAILHP     RDS              P  P           XXXXXXXX       EAGPLVGVSVV+DCR+ACTVELLWDVDLTLLGREMGLHPKL    A      SS ++  +  GG                                GG+++LSSL G+ W+S VSAS RL R      RWG RVA   GAP +SS+                             PS  V +     GG       GXXXXXXXXXXXXXXXXXXXXXXXXX                     +G VGS    RSWAASLGLRKSS  N      GG DG+D AGV  TVGQ LGL G XXXXXXXXXXXXX           MGLCGKRTVPRALSAG  RVF TLPGESYFRGR Q G W AG                                      X        G R WPRVGD VRAGRCSLAIVIRPAAG E GDW GWRHRPTHRVTRQ+ LVQLTERS A   G  SQQAPSARCLRHLVA+SKGG  GD E+IYSF+EV
Sbjct:   47 LGSRRLVAIRGAGRRVRIFRLLGRNYXXXXXXXXXXXALVHTRQAYPPKTMPCSLLVASDP---GGVKAILHP-----RDSDDNI----------PVDPRPPXXXXXXXXXXXXXXXXGALGARAEAGPLVGVSVVLDCRIACTVELLWDVDLTLLGREMGLHPKLRTA-AGAAAASSSPTDRFDVGGG--------------------------------GGLSSLSSLPGNAWASAVSASRRLFRAGRE--RWGSRVA---GAPPESSSRPSXXXXXXXXXXXXXXXXXXXXXXXXXYPSNNVDE---EMGGRGVGGALGXXXXXXXXXXXXXXXXXXXXXXXXXGASAAEAVLASLDGPGARRAGTGNVGSGGAGRSWAASLGLRKSSVFNA-----GGEDGSDTAGVGWTVGQALGLGGXXXXXXXXXXXXXXGI---------MGLCGKRTVPRALSAGRGRVFTTLPGESYFRGRQQGGEWNAGATATSAAGAAKVGGGRGGGVDVRXXXXXXXXXXXXXXXXGAGERPAAGGRDWPRVGDPVRAGRCSLAIVIRPAAGEETGDWVGWRHRPTHRVTRQIWLVQLTERS-AGVDGAPSQQAPSARCLRHLVAMSKGG-DGDPESIYSFAEV 608          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9287.20237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQX1_ECTSI1.070e-12055.91RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5K7X0_9PHAE4.760e-11452.12RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9287contigS-firma_M_contig9287:516..4192 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9287.20237.1mRNA_S-firma_M_contig9287.20237.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9287 515..4192 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9287.20237.1 ID=prot_S-firma_M_contig9287.20237.1|Name=mRNA_S-firma_M_contig9287.20237.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=583bp
LGSRRLVAIRGAGRRVRIFRLLGRSYLQRALGRNHLQALVHTRQAYPPKA
MPCTLLLASDPLPSGGMKAILHPLERGGRDSPTRADSTASTGGGRPASPA
VRARGSAGVAAAAAAAAAEEEGGEEAGPLVGVSVVMDCRVACTVELLWDV
DLTLLGREMGLHPKLHLLPASTGGDGSSRSNAINAIGGGSNATASAAAAA
AAAAASTADRSNSSGGGLGAGGVANLSSLAGDLWSSVVSASGRLGRTAGS
GGRWGRRVAAGAGAPNDSSAPSARVQQGQDLRGGDSGANESGGGGGGGYL
DAAVVGDDDEEMGRRRTGSGAAPAPAAAASGGGDGGGGSGPVGSRSWAAS
LGLRKSSALNGAAGANGGADGADEAGVTVGQILGLNGSGAGRGRGGGAGG
GGGGGGGVPGARMGLCGKRTVPRALSAGGNRVFETLPGESYFRGRPQSGA
WAAGAGAGAGAGGGTSSSAAVFAGSGGGGAAAGGRRRWPRVGDSVRAGRC
SLAIVIRPAAGAENGDWSGWRHRPTHRVTRQVLLVQLTERSPAAGSGTAS
QQAPSARCLRHLVAISKGGGQGDAEAIYSFSEV
back to top