prot_S-firma_M_contig924.20184.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig924.20184.1
Unique Name	prot_S-firma_M_contig924.20184.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	645

Homology

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BLAST of mRNA_S-firma_M_contig924.20184.1 vs. uniprot
Match: A0A6H5JQS7_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS7_9PHAE)

HSP 1 Score: 629 bits (1621), Expect = 1.490e-211
Identity = 485/619 (78.35%), Postives = 516/619 (83.36%), Query Frame = 0

Query:   35 MFRRSHPASKLSNTELKKLEQLYLMVDNCTLDMQRGQDTASKLADAINGYPNATMVYEVMRRIRKCFKSGNAQVVLRALDLTDILMQSCGPHARREVASDKFLKQIGKLCKVTKTRLDPSWQTVSERAQELIAGWAEASQRMVGSGNKFTQMYENLRRDGVPFRGGSXXXXXXXXXXXXXXXXXXXXXXXXXXX----------RFRTTGGSVLRPGDEGYDEEADLAAAIFASSISATXXXXXXXXXXXXXXXXXXLPAASGDGGELLSMVPPTIEALMDIMEGSKDLTELLDNDVVQDVVDQTRGLVEQVIKKVEELNASGNPDEKDMDRYLKAHDDLQTVLRVYDAVLDGNEPLPLSRGAAGAAARGTGEATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RSSPAKGNLLDLEENAPLETGMTGEGAGGMMVAYAGXXXXXXXXXXXXXXXXXAGGVSGVGGVGFDSSSSGLQGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXXXXXXGGGVGEGPSGFAPADPFAS-FGGGPPSSAAPNAP-GAPNEPAPRPLSGSFPPGGLPDNQSTSIVSVTSSSAANR 640
            MFRRSHPASKL+NTELKKLEQL+LMVD+CTLDMQRGQ+T+S+LADAINGYPNATMVYEVMRRIRKCFKS N QVVLRALDLTD LMQSCG HARREV+SDKFLK IGKLCKVTKTRLDPSWQ VSERAQEL+AGWA  S+RMVGSG++FTQ+YENLRRDGVPFRGGSXXXXXXXXXXXXXXXXXXXXXXXXXXX          RFR+ GGSVLRPGDE YDEEADLAAAIFASSIS T XXXXXXXXXXXXX        + + GELLSMVPPTIEALMDIMEGSKDLTELL N+V  DVVDQTR LV+QVIKKVE+L  SGNPDEKD+DRYLKAHDDLQTVLRVY+ V+DG+E LPLSR       RGT      XXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RSSPA+GNLLDLEEN PL+T MTGEGAGGMMVAY                    GGVSGVGGVGFDS S   QGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXX    GGG G+  SGFAP DPFA+ FGG  PS+AAP+ P GAP+EPAPRPL   FP GG+P NQS+SIVSVTSSSA NR
Sbjct:    1 MFRRSHPASKLTNTELKKLEQLFLMVDSCTLDMQRGQNTSSQLADAINGYPNATMVYEVMRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKVIGKLCKVTKTRLDPSWQMVSERAQELVAGWA--SERMVGSGSRFTQLYENLRRDGVPFRGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRFRSAGGSVLRPGDESYDEEADLAAAIFASSISGTVXXXXXXXXXXXXXRAVNSGLPTAENGELLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGQSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGXXXTRGTXXXXXXXXXXXXXXXXXXXXXXTAYSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSSPARGNLLDLEENTPLDTSMTGEGAGGMMVAYT-------DGQFMASTSNSVGGVSGVGGVGFDSLSGAGQGSATASNYASASDTGAVYGSNQFXXXXXXXXXXXXXXXXXS---GGGGGDFSSGFAPRDPFAAAFGGSAPSAAAPDVPPGAPDEPAPRPLPAFFP-GGIPGNQSSSIVSVTSSSATNR 606

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BLAST of mRNA_S-firma_M_contig924.20184.1 vs. uniprot
Match: D8LEH3_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH3_ECTSI)

HSP 1 Score: 503 bits (1296), Expect = 1.420e-170
Identity = 306/374 (81.82%), Postives = 326/374 (87.17%), Query Frame = 0

Query:   35 MFRRSHPASKLSNTELKKLEQLYLMVDNCTLDMQRGQDTASKLADAINGYPNATMVYEVMRRIRKCFKSGNAQVVLRALDLTDILMQSCGPHARREVASDKFLKQIGKLCKVTKTRLDPSWQTVSERAQELIAGWAEASQRMVGSGNKFTQMYENLRRDGVPFRGGSXXXXXXXXXXXXXXXXXXXXXXXXXXX----RFRTTGGSVLRPGDEGYDEEADLAAAIFASSISATXXXXXXXXXXXXXXXXXX-LPAASGDGGELLSMVPPTIEALMDIMEGSKDLTELLDNDVVQDVVDQTRGLVEQVIKKVEELNASGNPDEKDMDRYLKAHDDLQTVLRVYDAVLDGNEPLPLSRGAAGAA--ARGTGEATAA 401
            MFRRSHPASKL+NTELKKLEQL+LMVDNCTLDMQRGQDT+S+LADAINGYPNATMVYEVMRRIRKCFKS N QVVLRALDLTD LMQSCG HARREV+SDKFLK IGKLCKVTKTRLDPSWQTVSERAQ+L+ GWAEAS+RMVGSG++FTQ+YENLRRDGV FRGGS           XXXXXXXXXXXXXXXX    RFR+ GGSVLRPGDEGYDEEADLAAAIFASSIS TXXXXXXXXXXXXXX     LP A  + GELLSMVPPTIEALMDIMEGSKDLTELL N+V  DVVDQTR LV+QVIKKVE+L  SGNPDEKD+DRYLKAHDDLQTVLRVY+ V+DG+E LPLSR   G    ARGTGEATAA
Sbjct:    1 MFRRSHPASKLTNTELKKLEQLFLMVDNCTLDMQRGQDTSSQLADAINGYPNATMVYEVMRRIRKCFKSSNTQVVLRALDLTDTLMQSCGSHARREVSSDKFLKLIGKLCKVTKTRLDPSWQTVSERAQDLVVGWAEASERMVGSGSRFTQLYENLRRDGVLFRGGSGSGGRNGAIGAXXXXXXXXXXXXXXXXXXXXRFRSAGGSVLRPGDEGYDEEADLAAAIFASSISGTXXXXXXXXXXXXXXAVNSGLPTA--ENGELLSMVPPTIEALMDIMEGSKDLTELLGNEVAPDVVDQTRDLVQQVIKKVEDLGHSGNPDEKDLDRYLKAHDDLQTVLRVYEGVVDGSETLPLSRRGGGXXXXARGTGEATAA 372

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig924.20184.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig924.20184.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JQS7_9PHAE	1.490e-211	78.35	VHS domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LEH3_ECTSI	1.420e-170	81.82	VHS domain-containing protein n=1 Tax=Ectocarpus s...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002014	VHS domain	SMART	SM00288	VHS_2	coord: 56..194 e-value: 3.1E-4 score: 26.0
IPR002014	VHS domain	PFAM	PF00790	VHS	coord: 75..194 e-value: 1.7E-12 score: 47.4
IPR002014	VHS domain	PROSITE	PS50179	VHS	coord: 76..198 score: 19.614
IPR008942	ENTH/VHS	GENE3D	1.25.40.90		coord: 46..200 e-value: 1.0E-23 score: 85.6
IPR008942	ENTH/VHS	SUPERFAMILY	48464	ENTH/VHS domain	coord: 55..197
None	No IPR available	PANTHER	PTHR45898	FAMILY NOT NAMED	coord: 305..599 coord: 55..197
None	No IPR available	PANTHER	PTHR45898:SF2	TARGET OF MYB PROTEIN 1	coord: 305..599 coord: 55..197
None	No IPR available	SUPERFAMILY	89009	GAT-like domain	coord: 293..377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig924	contig	S-firma_M_contig924:10070..18909 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig924.20184.1	mRNA_S-firma_M_contig924.20184.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig924 10068..18909 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig924.20184.1 ID=prot_S-firma_M_contig924.20184.1|Name=mRNA_S-firma_M_contig924.20184.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=645bp
IHVAPQNFREAARRQTVHGKPQTTPRSACLTLVAMFRRSHPASKLSNTEL
KKLEQLYLMVDNCTLDMQRGQDTASKLADAINGYPNATMVYEVMRRIRKC
FKSGNAQVVLRALDLTDILMQSCGPHARREVASDKFLKQIGKLCKVTKTR
LDPSWQTVSERAQELIAGWAEASQRMVGSGNKFTQMYENLRRDGVPFRGG
SGGGGGGGDSAMARGGFAAAAAGGGGGGRFRTTGGSVLRPGDEGYDEEAD
LAAAIFASSISATGAAGGAGAGGARGGGAGGLPAASGDGGELLSMVPPTI
EALMDIMEGSKDLTELLDNDVVQDVVDQTRGLVEQVIKKVEELNASGNPD
EKDMDRYLKAHDDLQTVLRVYDAVLDGNEPLPLSRGAAGAAARGTGEATA
AAEAAFAAAANGNTGGGGAHSSDDDSGEDGAAGGRGARRRAAAAAGGASG
GRSSPAKGNLLDLEENAPLETGMTGEGAGGMMVAYAGGGQFMASSTNNNN
NSSSAGGVSGVGGVGFDSSSSGLQGSATASNYASASDTGAVYGSNQFGSN
NLGSNVGSNNFGSSNFSSGGGVGEGPSGFAPADPFASFGGGPPSSAAPNA
PGAPNEPAPRPLSGSFPPGGLPDNQSTSIVSVTSSSAANRGGSMG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008942	ENTH_VHS
IPR002014	VHS_dom