prot_S-firma_M_contig9235.20178.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig9235.20178.1
Unique Name	prot_S-firma_M_contig9235.20178.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	133

Homology

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BLAST of mRNA_S-firma_M_contig9235.20178.1 vs. uniprot
Match: D7G990_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G990_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 9.210e-60
Identity = 101/134 (75.37%), Postives = 113/134 (84.33%), Query Frame = 0

Query:    1 HYGLVLPFGSELTQELMAATLNLREDGTVGDIEDAYLDPSAICVPVATNEGEAANMTVGDVSGVFIVLGVFVSAATVSWCFRRSPWAKQAKARRQ-RNNGDAEQDVLDSYAKMSRRQQKSFAMQATVALLQDSR 133
            HYGLVLP+GS LT+EL AATL LREDGT+ DIE+ YLDPSA+CVPV T+E E++NMTV DVSGVF VLG FV AATVSWCFRRSPWAK+AK RR+    G AEQ V+DSYAKMSR QQK+FAMQATV LLQ SR
Sbjct:   61 HYGLVLPYGSGLTEELQAATLQLREDGTLSDIEETYLDPSAVCVPVTTSEEESSNMTVSDVSGVFFVLGFFVIAATVSWCFRRSPWAKRAKERRRLEKGGAAEQSVMDSYAKMSRGQQKAFAMQATVNLLQHSR 194

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BLAST of mRNA_S-firma_M_contig9235.20178.1 vs. uniprot
Match: A0A6H5JES6_9PHAE (PBPe domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES6_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.940e-9
Identity = 27/40 (67.50%), Postives = 35/40 (87.50%), Query Frame = 0

Query:   19 ATLNLREDGTVGDIEDAYLDPSAICVPVATNEGEAANMTV 58
            ATL LREDGT+ DIE++YLDPS +CVPV T+E E++NMT+
Sbjct:  441 ATLQLREDGTLIDIEESYLDPSVVCVPVTTSEEESSNMTI 480

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9235.20178.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9235.20178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G990_ECTSI	9.210e-60	75.37	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JES6_9PHAE	9.940e-9	67.50	PBPe domain-containing protein n=1 Tax=Ectocarpus ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..60
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 61..81
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 82..133
None	No IPR available	TMHMM	TMhelix		coord: 59..81

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9235	contig	S-firma_M_contig9235:2643..3817 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9235.20178.1	mRNA_S-firma_M_contig9235.20178.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig9235 2643..3817 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig9235.20178.1 ID=prot_S-firma_M_contig9235.20178.1|Name=mRNA_S-firma_M_contig9235.20178.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=133bp
HYGLVLPFGSELTQELMAATLNLREDGTVGDIEDAYLDPSAICVPVATNE
GEAANMTVGDVSGVFIVLGVFVSAATVSWCFRRSPWAKQAKARRQRNNGD
AEQDVLDSYAKMSRRQQKSFAMQATVALLQDSR