prot_S-firma_M_contig920.20151.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig920.20151.1
Unique Nameprot_S-firma_M_contig920.20151.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length257
Homology
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BLAST of mRNA_S-firma_M_contig920.20151.1 vs. uniprot
Match: D7FQ74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ74_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 8.780e-54
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 0 
Query:  162 EDGSVTNIAQALGEKLYVTVDGQGTPASTSTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDPKLRIFRSDTGGLVVQTKANEVVPV 256
            EDGSVTNIAQALG+KLYVTVDGQG+PAST TDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYND +LRIFRSDTGG+VVQTKA+EVVPV
Sbjct:  108 EDGSVTNIAQALGDKLYVTVDGQGSPASTDTDLPYEVNVEVSRAWLHALGGKIPLDFIKGKGTTFVVYNDARLRIFRSDTGGVVVQTKADEVVPV 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig920.20151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ74_ECTSI8.780e-5492.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..256
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.834
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig920contigS-firma_M_contig920:9977..13172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig920.20151.1mRNA_S-firma_M_contig920.20151.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig920 9313..14013 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig920.20151.1 ID=prot_S-firma_M_contig920.20151.1|Name=mRNA_S-firma_M_contig920.20151.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=257bp
MTSTRRRNVAVLLLVIFHTTTAFVATTSNHFCSRAAAGASNTPLPAGSVG
VRGEETRIAAATGFFETLFGGLKTEKDTTSADTARLSEELFSLLSDDGAK
PDDDVVVQKIEELEAAPGVSFNKDFLYDGPWRVLWKTNTAWQRYFDPLNS
VADNRAYQWYKEDGSVTNIAQALGEKLYVTVDGQGTPASTSTDLPYEVNV
EVSRAWLHALGGKIPLDFIKGKGTTFVVYNDPKLRIFRSDTGGLVVQTKA
NEVVPV*
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