prot_S-firma_M_contig9116.20061.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9116.20061.1
Unique Nameprot_S-firma_M_contig9116.20061.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length150
Homology
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BLAST of mRNA_S-firma_M_contig9116.20061.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.870e-24
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 0 
Query:   96 MTPVSLEDRLCVDMKIVNDDYAFYDTGALAAAAATASNNTWAGASHWKFVGVKKK 150
            +TPV+LEDRLCVDMKIVNDDYAFYDTGALAAAAAT+SNNTWAGASHWKFVGVKKK
Sbjct:  396 VTPVTLEDRLCVDMKIVNDDYAFYDTGALAAAAATSSNNTWAGASHWKFVGVKKK 450
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9116.20061.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LD70_ECTSI1.870e-2494.55Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9116contigS-firma_M_contig9116:292..4136 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9116.20061.1mRNA_S-firma_M_contig9116.20061.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9116 292..4136 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9116.20061.1 ID=prot_S-firma_M_contig9116.20061.1|Name=mRNA_S-firma_M_contig9116.20061.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=150bp
GGFDDVPGSDGDASFDGGGANFGGVGGDEDSGGDGAVPDFGGAAHDDADP
FQADNGDGFGGGVGDGGVSFLDDHDSGNQDGGVDRPSSGSGGTMTMTPVS
LEDRLCVDMKIVNDDYAFYDTGALAAAAATASNNTWAGASHWKFVGVKKK
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