prot_S-firma_M_contig9106.20051.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9106.20051.1
Unique Nameprot_S-firma_M_contig9106.20051.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length220
Homology
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BLAST of mRNA_S-firma_M_contig9106.20051.1 vs. uniprot
Match: A0A6H5JZB1_9PHAE (NMO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 9.070e-22
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 0 
Query:    2 AVARGGGLGVIGAGSGKSTTELDEEVRIFRDEAPLGAKLALGIISWSALGGNGYGVTQSA 61
            AVARGGGLGVIGAGSGK+ +ELDEEVR+FRDEAPLGAKLALGIISWSALGG+G+GVTQ++
Sbjct:   30 AVARGGGLGVIGAGSGKNISELDEEVRLFRDEAPLGAKLALGIISWSALGGDGHGVTQAS 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9106.20051.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZB1_9PHAE9.070e-2286.67NMO domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9106contigS-firma_M_contig9106:477..3935 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9106.20051.1mRNA_S-firma_M_contig9106.20051.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9106 477..3935 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9106.20051.1 ID=prot_S-firma_M_contig9106.20051.1|Name=mRNA_S-firma_M_contig9106.20051.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=220bp
AAVARGGGLGVIGAGSGKSTTELDEEVRIFRDEAPLGAKLALGIISWSAL
GGNGYGVTQSARSKTNGGASAAGAGGAATGVGAAKEGPAATAAAAATTAA
AAEAAAAAAAAAAAADGAKSNGGGGGDGVASGRRSMVDGSNGYNGSGSGS
GSGGVRHVGAGDPGGAVQAPRDLVLRAVHSIETSLHGLPGDGSRGHRTGG
HGRAGANGGGDGRLGGSGAR
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