prot_S-firma_M_contig910.20048.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig910.20048.1
Unique Nameprot_S-firma_M_contig910.20048.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length180
Homology
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: D7G284_ECTSI (50S ribosomal protein L20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G284_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 8.620e-69
Identity = 108/115 (93.91%), Postives = 113/115 (98.26%), Query Frame = 0
Query:   65 MATGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPQA 179
            MA  NHRHKKILK+AKGYRGRSKSVFKIAIQ+VEKALQQAYRDRKNKKR+FRRLWIERINAGVRQHGMPYSVFVNKA+KADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSP+A
Sbjct:    1 MAANNHRHKKILKLAKGYRGRSKSVFKIAIQRVEKALQQAYRDRKNKKREFRRLWIERINAGVRQHGMPYSVFVNKARKADVELNRKVLAEMAVTEPYSFRAVVETVKAKGSPKA 115          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A3B9VH17_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3B9VH17_9PROT)

HSP 1 Score: 147 bits (372), Expect = 9.190e-43
Identity = 71/111 (63.96%), Postives = 90/111 (81.08%), Query Frame = 0
Query:   63 RGMATGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 173
            +G  T   RH KI+KMAKGYRGR+KS F++A++KVEKALQ AYRDR+NKKRDFRRLWI RINA  RQHG+ YSVF+N  K A++E++RKVLA +A+T+  +F A+VE  KA
Sbjct:    5 KGGVTSRRRHNKIIKMAKGYRGRNKSCFRVAVEKVEKALQYAYRDRRNKKRDFRRLWITRINAATRQHGLSYSVFINALKAANIEIDRKVLAHVAMTDAKAFSAIVEKAKA 115          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A2A5BDS7_9RICK (50S ribosomal protein L20 n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2A5BDS7_9RICK)

HSP 1 Score: 144 bits (362), Expect = 3.020e-41
Identity = 72/103 (69.90%), Postives = 87/103 (84.47%), Query Frame = 0
Query:   70 HRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 172
            +RHKKI+KMAKGYRGR+K+ FKIAI+KVEKALQ AYRDR+N+KRDFR LWI+RINA VRQH M YS F+   KKA +E++RK+LAEMAV +P SF  +VE VK
Sbjct:   12 NRHKKIIKMAKGYRGRAKNCFKIAIEKVEKALQYAYRDRRNRKRDFRGLWIQRINAAVRQHDMIYSTFMGGMKKAGIEVDRKMLAEMAVNDPASFTHIVEQVK 114          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A2S6SQA5_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin1 TaxID=2013088 RepID=A0A2S6SQA5_9PROT)

HSP 1 Score: 143 bits (360), Expect = 6.870e-41
Identity = 65/102 (63.73%), Postives = 90/102 (88.24%), Query Frame = 0
Query:   71 RHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 172
            RHKKILKMAKGYRGRSK+VF++AIQ+VEKALQ AYRDR+ KKR+FR LWI+RINAG R+HGM YS F++  KKA++E++RK+L+++A+  P +F+++VE ++
Sbjct:   13 RHKKILKMAKGYRGRSKNVFRVAIQRVEKALQYAYRDRRTKKRNFRALWIQRINAGTREHGMSYSQFIHGIKKAEIEIDRKILSDIALNNPVTFKSIVEKIR 114          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A0F2RAW3_9PROT (50S ribosomal protein L20 n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2RAW3_9PROT)

HSP 1 Score: 142 bits (359), Expect = 8.880e-41
Identity = 73/111 (65.77%), Postives = 92/111 (82.88%), Query Frame = 0
Query:   63 RGMATGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 173
            RG+ T + RHKKI+K+AKGYRGR+ + F+IAI+KVEKAL+ AYRDR+NKKRDFR LWI+RINA  R+H MPYS F+N  KKA +EL+RKVLA++AV EP SF ++VE  KA
Sbjct:    6 RGVTT-HARHKKIIKLAKGYRGRNSTNFRIAIEKVEKALRYAYRDRRNKKRDFRGLWIQRINAASREHNMPYSSFMNGLKKAGIELDRKVLADLAVREPASFASLVEKAKA 115          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: W7TQD2_9STRA (50s ribosomal protein l20 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD2_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.120e-40
Identity = 71/106 (66.98%), Postives = 93/106 (87.74%), Query Frame = 0
Query:   69 NHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 174
            NHRHKKI+KMAKGYRGR+ + F+IA+Q+VEKALQ AYRDRK KKR+FR LWI+RI A V+Q+GM YS F+   ++A++ LNRKVLA++AV+EPYSF+AVVETV+++
Sbjct:   53 NHRHKKIVKMAKGYRGRT-NCFRIAVQRVEKALQYAYRDRKVKKREFRSLWIQRIGAAVQQYGMNYSRFIPGLRRANITLNRKVLADLAVSEPYSFKAVVETVRSQ 157          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A7X2KDB2_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KDB2_9PROT)

HSP 1 Score: 141 bits (355), Expect = 3.700e-40
Identity = 70/107 (65.42%), Postives = 88/107 (82.24%), Query Frame = 0
Query:   67 TGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKA 173
            T + RHKK+LK+AKGYRGR+ + F+IA++KVEK LQ AYRDR+ KKR FR+LWI RINAGVRQHGM YS F+N  K A +EL+RKVLA+MA  EP SF+A+V+T +A
Sbjct:    9 TSHARHKKVLKLAKGYRGRNSTNFRIALEKVEKGLQYAYRDRRAKKRTFRQLWITRINAGVRQHGMTYSQFMNGMKLAGIELDRKVLADMAALEPESFKALVDTARA 115          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A2S6SBV7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium MarineAlpha6_Bin2 TaxID=2013089 RepID=A0A2S6SBV7_9PROT)

HSP 1 Score: 141 bits (355), Expect = 3.930e-40
Identity = 65/104 (62.50%), Postives = 88/104 (84.62%), Query Frame = 0
Query:   71 RHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVKAK 174
            +HKKILKMAKGYRGRSK+VF+IA+QKVEK LQ AYRDR+ KKR+FR LWI++INAG R+HGM YS F+   KKA++E++RK+LA++A+  P +F+ +VE V+ +
Sbjct:   13 KHKKILKMAKGYRGRSKNVFRIAVQKVEKGLQYAYRDRRTKKRNFRALWIQKINAGTREHGMSYSQFIKGMKKAEIEIDRKILADIALNNPITFKFIVEKVRGR 116          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A4Q7DJH6_9PROT (50S ribosomal protein L20 n=1 Tax=Candidatus Finniella inopinata TaxID=1696036 RepID=A0A4Q7DJH6_9PROT)

HSP 1 Score: 141 bits (355), Expect = 3.930e-40
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = 0
Query:   63 RGMATGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVETVK 172
            RG+ T + RHKKI+KMAKGYRGRSK+ F+IA+Q+VEKALQ AYRDR+NKKRDFR LWI+RINA VR+ G+ YSVF+N   KA + ++RK +AE+AV EP SF+ +VE VK
Sbjct:    6 RGVTT-HARHKKIIKMAKGYRGRSKNCFRIAVQRVEKALQYAYRDRRNKKRDFRGLWIQRINAAVRELGLTYSVFMNGLIKAGITIDRKAMAELAVNEPASFKVLVEQVK 114          
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Match: A0A1M3GWJ7_9PROT (50S ribosomal protein L20 n=1 Tax=Alphaproteobacteria bacterium 41-28 TaxID=1895706 RepID=A0A1M3GWJ7_9PROT)

HSP 1 Score: 140 bits (354), Expect = 5.240e-40
Identity = 66/103 (64.08%), Postives = 89/103 (86.41%), Query Frame = 0
Query:   67 TGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKALQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNRKVLAEMAVTEPYSFRAVVE 169
            T + RHKK+LK+AKGYRGRSK+ F+IAIQ+VEKALQ AYRDR+N+KRDFR LWI+RINAG R+HG+ YS F+N   KA ++++RKVLA++AV EP +F+++V+
Sbjct:    9 TTHARHKKVLKLAKGYRGRSKNCFRIAIQRVEKALQYAYRDRRNRKRDFRGLWIQRINAGTREHGLTYSKFINGLTKAGIDIDRKVLADLAVHEPAAFKSIVD 111          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig910.20048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G284_ECTSI8.620e-6993.9150S ribosomal protein L20 n=1 Tax=Ectocarpus silic... [more]
A0A3B9VH17_9PROT9.190e-4363.9650S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2A5BDS7_9RICK3.020e-4169.9050S ribosomal protein L20 n=1 Tax=Rickettsiales ba... [more]
A0A2S6SQA5_9PROT6.870e-4163.7350S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A0F2RAW3_9PROT8.880e-4165.7750S ribosomal protein L20 n=1 Tax=Rhodospirillacea... [more]
W7TQD2_9STRA2.120e-4066.9850s ribosomal protein l20 n=1 Tax=Nannochloropsis ... [more]
A0A7X2KDB2_9PROT3.700e-4065.4250S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A2S6SBV7_9PROT3.930e-4062.5050S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]
A0A4Q7DJH6_9PROT3.930e-4065.4550S ribosomal protein L20 n=1 Tax=Candidatus Finni... [more]
A0A1M3GWJ7_9PROT5.240e-4064.0850S ribosomal protein L20 n=1 Tax=Alphaproteobacte... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availableGENE3D1.10.720.90coord: 62..113
e-value: 6.5E-19
score: 69.7
NoneNo IPR availablePRODOMPD002389coord: 78..130
e-value: 1.0E-10
score: 158.0
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 70..99
score: 42.22
coord: 133..159
score: 44.0
coord: 100..129
score: 60.1
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 67..172
e-value: 3.8E-43
score: 144.4
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 67..166
e-value: 5.1E-43
score: 145.5
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 67..174
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 59..173
score: 26.221
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20coord: 114..175
e-value: 8.3E-28
score: 97.7
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 69..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig910contigS-firma_M_contig910:23158..25387 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig910.20048.1mRNA_S-firma_M_contig910.20048.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig910 23099..26190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig910.20048.1 ID=prot_S-firma_M_contig910.20048.1|Name=mRNA_S-firma_M_contig910.20048.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=180bp
MSLSSVLGRVRPQALWSSLSRPGCASSAGLSGRGLGAAMGVRRSPGQGPW
DVLGQGQQQQQCRGMATGNHRHKKILKMAKGYRGRSKSVFKIAIQKVEKA
LQQAYRDRKNKKRDFRRLWIERINAGVRQHGMPYSVFVNKAKKADVELNR
KVLAEMAVTEPYSFRAVVETVKAKGSPQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035566Ribosomal_protein_L20_C
IPR005813Ribosomal_L20