prot_S-firma_M_contig9098.20040.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_M_contig9098.20040.1
Unique Name	prot_S-firma_M_contig9098.20040.1
Type	polypeptide
Organism	Sphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length	201

Homology

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 360 bits (925), Expect = 5.390e-120
Identity = 186/199 (93.47%), Postives = 192/199 (96.48%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALRL 199
            DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQD+AVLTGGQVISEEVGLKLED TPDHCGTCKLVKVSKDDTI+LDGAGARDGIEERC+LLRE+I  VKSDYEKEKL ERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLW+SRQLE  KASC NMDQKIGVEIIEKALR+
Sbjct:  275 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDLAVLTGGQVISEEVGLKLEDATPDHCGTCKLVKVSKDDTIILDGAGARDGIEERCSLLRESIARVKSDYEKEKLEERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWASRQLEATKASCANMDQKIGVEIIEKALRM 473

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A835YJG0_9STRA (Chaperonin Cpn60/TCP-1 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJG0_9STRA)

HSP 1 Score: 310 bits (794), Expect = 2.730e-100
Identity = 157/198 (79.29%), Postives = 174/198 (87.88%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALR 198
            DVESEALATLVVNKLRAG+KVCAVKAPGFGDNRKAT+QDIA+LTGG VISE++GL LE+ T  H G+CKL K+SKDD+I+LDG GARD IEERC LLRE+I   KSDYE EKL+ERLAKL  GVAVIKVGG SEVEV EKKDRF DALNATRAAV EGIVPGGGSALLW+SR LE VK+ C NMDQ+IGVEIIE+A+R
Sbjct:  277 DVESEALATLVVNKLRAGLKVCAVKAPGFGDNRKATMQDIAILTGGTVISEDIGLTLENATQQHLGSCKLAKISKDDSIILDGHGARDAIEERCVLLRESITRTKSDYEAEKLAERLAKLSGGVAVIKVGGGSEVEVSEKKDRFTDALNATRAAVEEGIVPGGGSALLWASRHLEDVKSKCTNMDQRIGVEIIERAIR 474

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: B5YLQ5_THAPS (Mitochondrial chaperonin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YLQ5_THAPS)

HSP 1 Score: 295 bits (756), Expect = 8.110e-95
Identity = 151/198 (76.26%), Postives = 171/198 (86.36%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALR 198
            DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKAT+QD+A+LTGG VISEEVG+K+EDVTP+  GTCK V+V+K+DTIVLDGAG +  IEERC L+R  I   KSDYE+EKL ERLAKL  GVAVIKVGG+SEVEV EKKDR VDALNATRAAV EGIVPGGG ALL+ S +L+ + A   NMDQ+IG+EII+KALR
Sbjct:  254 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATMQDLAILTGGTVISEEVGMKIEDVTPEQLGTCKRVRVTKNDTIVLDGAGEKPAIEERCELIRSGIETTKSDYEREKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEEGIVPGGGKALLYCSTKLDDIAAQATNMDQRIGIEIIQKALR 451

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: W7TM88_9STRA (Chaperonin Cpn60/TCP-1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TM88_9STRA)

HSP 1 Score: 294 bits (752), Expect = 5.180e-94
Identity = 156/197 (79.19%), Postives = 171/197 (86.80%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKAL 197
            DVESEALATLVVNKLRAGIKV AVKAPGFGDNRKATLQDIAVLTGGQVISE++GLK+E+ T D  GT K V VSKDDT++L G GARD I+ERC LL+++I A  SDYEKEKL ERLAKL  GVAVIKVGG+SEVEV EKKDR VDALNATRAAV +GIVPGGG ALLW+S+QLE VKA   NMDQ+IGVEIIEKAL
Sbjct:  274 DVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATLQDIAVLTGGQVISEDLGLKVENTTEDMLGTSKKVTVSKDDTLILHGNGARDAIDERCLLLKDSIAATASDYEKEKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEQGIVPGGGLALLWASKQLEDVKAKVSNMDQRIGVEIIEKAL 470

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A6U3QVY4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QVY4_9STRA)

HSP 1 Score: 291 bits (745), Expect = 5.510e-93
Identity = 149/198 (75.25%), Postives = 168/198 (84.85%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALR 198
            DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISE+VGLKLE+VT +H G CK V +SKDDTI+LDGAG  +GI ERC L+R+ +    S+YEKEKL ERLAKL  G+AVIKVGG++E EV EKKDR VDALNATRAAV  GIVPGGG ALLW+S QL  V    ENMDQ+IG+EI+E+A+R
Sbjct:  279 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEDVGLKLENVTEEHLGVCKKVTISKDDTIILDGAGESEGINERCELIRDAMARTSSEYEKEKLQERLAKLSGGIAVIKVGGATETEVSEKKDRVVDALNATRAAVENGIVPGGGKALLWASMQLGPVYEKAENMDQRIGIEIVERAIR 476

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A6U3ZHX5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZHX5_9STRA)

HSP 1 Score: 281 bits (718), Expect = 3.430e-92
Identity = 143/198 (72.22%), Postives = 171/198 (86.36%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALR 198
            DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKAT+QD+A+LTGG VIS+++G+K+E+VTP+  G+ K V+++K+DTIVLDG+G +  I ERC L+R  I+  KSDYE+EKL ERLAKL  GVA+IKVGG+SEVEV EKKDR VDALNATRAAV EGIVPGGG ALL+ S +L+ V A+  NMDQ+IGVEII+KALR
Sbjct:   15 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATMQDLAILTGGTVISQDIGMKIEEVTPEQLGSAKRVRITKNDTIVLDGSGDKSLIGERCDLIRSGIDTTKSDYEREKLQERLAKLAGGVAIIKVGGASEVEVNEKKDRVVDALNATRAAVEEGIVPGGGKALLYCSTKLDDVAANAANMDQRIGVEIIQKALR 212

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A7R9VDJ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VDJ5_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.020e-91
Identity = 150/198 (75.76%), Postives = 170/198 (85.86%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQL-EGVKASCENMDQKIGVEIIEKAL 197
            DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKAT+QD+A+LTGG VISEEVG+KLEDV P H G+CK +KV+K+DTIVLDGAG +  IEERC L+R +I + KSDYE+EKL ERLAKL  GVAVIKVGG+SEVEV EKKDR VDALNATRAAV EGIVPGGG ALL+ S  L E  +   +NMDQ+IGVEII++AL
Sbjct:  163 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATMQDLAILTGGTVISEEVGMKLEDVQPAHLGSCKKLKVTKNDTIVLDGAGDKSAIEERCDLIRTSIESTKSDYEREKLQERLAKLSGGVAVIKVGGASEVEVSEKKDRVVDALNATRAAVEEGIVPGGGKALLYCSTLLTEVAEKEAKNMDQRIGVEIIQRAL 360

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A7S2WK37_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WK37_9STRA)

HSP 1 Score: 286 bits (733), Expect = 3.820e-91
Identity = 147/198 (74.24%), Postives = 169/198 (85.35%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALR 198
            DVESEALA LVVNKLRAGIKVCAVKAPGFGDNRKAT+QD+A+LTGG VISE++GLKLE+V P   G+CK + V+K+DT+VLDGAG    IEERC  +R +I + KSDYE+EKL ERLAKL  GVAVIKVGG+SEVEV EKKDR VDALNATRAAV EGIVPGGG ALL++S  L+GV   C+NMDQ+IGVEIIE+ALR
Sbjct:  278 DVESEALAALVVNKLRAGIKVCAVKAPGFGDNRKATMQDLAILTGGTVISEDIGLKLEEVQPAQLGSCKRLTVTKNDTVVLDGAGDNSAIEERCDFIRASIESTKSDYEREKLQERLAKLSGGVAVIKVGGASEVEVNEKKDRVVDALNATRAAVEEGIVPGGGKALLYASTLLKGVADKCDNMDQRIGVEIIERALR 475

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A7S1FWL1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FWL1_9STRA)

HSP 1 Score: 280 bits (715), Expect = 1.190e-90
Identity = 146/197 (74.11%), Postives = 165/197 (83.76%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKAL 197
            DVESEALATLVVNKLRAGIKV AVKAPGFGDNRKAT+QD+A+LTGGQVISE+ GLKLE V+ D  G CK V V+KD TIVLDG G++D +EERC L+R +I   KSDYE+EKL ER+AKL  GVA+IKVGGSSEVEV EKKDR VDALNATRAAV EGIVPGGG ALL++S +L  V     N+DQKIGVEII+KAL
Sbjct:   93 DVESEALATLVVNKLRAGIKVAAVKAPGFGDNRKATMQDLAILTGGQVISEDAGLKLETVSDDMLGRCKKVSVTKDSTIVLDGLGSKDALEERCELIRNSIETTKSDYEREKLQERIAKLAGGVAIIKVGGSSEVEVNEKKDRVVDALNATRAAVEEGIVPGGGKALLYASTKLGAVAEVAPNLDQKIGVEIIQKAL 289

[Close]

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Match: A0A7S4JM35_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM35_9STRA)

HSP 1 Score: 283 bits (724), Expect = 3.360e-90
Identity = 148/198 (74.75%), Postives = 169/198 (85.35%), Query Frame = 0

Query:    1 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVISEEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLRENINAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNATRAAVSEGIVPGGGSALLWSSRQL-EGVKASCENMDQKIGVEIIEKAL 197
            DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKAT+QD+A+LTGG VISEEVG+KLE+V P H G CK +KV+K+DTIVLDGAG +  I+ERC L+R ++ A KSDYE+EKL ERLAKL  GVAVIKVGG+SEVEV EKKDR VDALNATRAAV EGIVPGGG ALL+ S  L E  +   +NMDQ+IGVEII++AL
Sbjct:  276 DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATMQDLAILTGGTVISEEVGMKLEEVQPAHLGNCKKIKVTKNDTIVLDGAGDKSAIDERCELIRTSVEATKSDYEREKLQERLAKLSGGVAVIKVGGASEVEVSEKKDRVVDALNATRAAVEEGIVPGGGKALLYCSTLLTEVAEKDAKNMDQRIGVEIIQRAL 473

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot

BLAST of mRNA_S-firma_M_contig9098.20040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KRB3_9PHAE	5.390e-120	93.47	HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=...	[more]
A0A835YJG0_9STRA	2.730e-100	79.29	Chaperonin Cpn60/TCP-1 family n=1 Tax=Tribonema mi...	[more]
B5YLQ5_THAPS	8.110e-95	76.26	Mitochondrial chaperonin n=1 Tax=Thalassiosira pse...	[more]
W7TM88_9STRA	5.180e-94	79.19	Chaperonin Cpn60/TCP-1 n=3 Tax=Monodopsidaceae Tax...	[more]
A0A6U3QVY4_9STRA	5.510e-93	75.25	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A6U3ZHX5_9STRA	3.430e-92	72.22	Hypothetical protein n=1 Tax=Skeletonema marinoi T...	[more]
A0A7R9VDJ5_9STRA	1.020e-91	75.76	Hypothetical protein (Fragment) n=1 Tax=Pseudictyo...	[more]
A0A7S2WK37_9STRA	3.820e-91	74.24	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]
A0A7S1FWL1_9STRA	1.190e-90	74.11	Hypothetical protein n=1 Tax=Corethron hystrix Tax...	[more]
A0A7S4JM35_9STRA	3.360e-90	74.75	Hypothetical protein (Fragment) n=1 Tax=Odontella ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	PANTHER	PTHR45633	FAMILY NOT NAMED	coord: 1..198
None	No IPR available	PANTHER	PTHR45633:SF26		coord: 1..198
IPR017998	Chaperone tailless complex polypeptide 1 (TCP-1)	PRINTS	PR00304	TCOMPLEXTCP1	coord: 126..148 score: 49.8 coord: 159..171 score: 51.8
IPR027409	GroEL-like apical domain superfamily	GENE3D	3.50.7.10		coord: 16..120 e-value: 1.4E-55 score: 191.0
IPR027409	GroEL-like apical domain superfamily	SUPERFAMILY	52029	GroEL apical domain-like	coord: 1..124
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	GENE3D	3.30.260.10		coord: 121..158 e-value: 1.4E-55 score: 191.0
IPR027410	TCP-1-like chaperonin intermediate domain superfamily	SUPERFAMILY	54849	GroEL-intermediate domain like	coord: 108..156
IPR002423	Chaperonin Cpn60/TCP-1 family	PFAM	PF00118	Cpn60_TCP1	coord: 1..198 e-value: 1.1E-23 score: 83.6
IPR027413	GroEL-like equatorial domain superfamily	GENE3D	1.10.560.10		coord: 159..198 e-value: 1.4E-55 score: 191.0
IPR027413	GroEL-like equatorial domain superfamily	SUPERFAMILY	48592	GroEL equatorial domain-like	coord: 154..199

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_M_contig9098	contig	S-firma_M_contig9098:864..4295 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_M_contig9098.20040.1	mRNA_S-firma_M_contig9098.20040.1	Sphaerotrichia firma Sfir_13m male	mRNA	S-firma_M_contig9098 864..4295 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_M_contig9098.20040.1 ID=prot_S-firma_M_contig9098.20040.1|Name=mRNA_S-firma_M_contig9098.20040.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=201bp
DVESEALATLVVNKLRAGIKVCAVKAPGFGDNRKATLQDIAVLTGGQVIS
EEVGLKLEDVTPDHCGTCKLVKVSKDDTIVLDGAGARDGIEERCALLREN
INAVKSDYEKEKLSERLAKLHSGVAVIKVGGSSEVEVGEKKDRFVDALNA
TRAAVSEGIVPGGGSALLWSSRQLEGVKASCENMDQKIGVEIIEKALRLV
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027413	GROEL-like_equatorial_sf
IPR002423	Cpn60/TCP-1
IPR027410	TCP-1-like_intermed_sf
IPR027409	GroEL-like_apical_dom_sf
IPR017998	Chaperone_TCP-1