prot_S-firma_M_contig9063.20004.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9063.20004.1
Unique Nameprot_S-firma_M_contig9063.20004.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length222
Homology
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BLAST of mRNA_S-firma_M_contig9063.20004.1 vs. uniprot
Match: D8LTP0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTP0_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 8.030e-20
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 0 
Query:  107 LLACLETSMDGALASAAAAXXLAAISLAMQAFKLEALGQTMAAVAAGGG--GEPGRFPAGETPWAQRLLQVLVVLLVAFAVRSYANGREAVQKAIEAAAKLCSSDIMPATG 215
            LLAC+ETSMDGALAS AAA  LAA  LA+QA  L+  G+  A  AAG    GE     AG TP+A R+LQ +++ LVA A+RSYANGREAV +AIEA   LC   +MP++G
Sbjct:  642 LLACVETSMDGALASTAAALALAAFGLALQAVHLDGSGRPAAVAAAGAAAAGEEDGDLAGGTPFALRILQAMLIALVAIALRSYANGREAVGRAIEATKGLCCGGMMPSSG 752
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9063.20004.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTP0_ECTSI8.030e-2056.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 190..222
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 118..138
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..111
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 168..189
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..92
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 139..167
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 112..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9063contigS-firma_M_contig9063:1686..3700 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9063.20004.1mRNA_S-firma_M_contig9063.20004.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9063 1686..3701 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9063.20004.1 ID=prot_S-firma_M_contig9063.20004.1|Name=mRNA_S-firma_M_contig9063.20004.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=222bp
RRARRGAALPLPPVLLLARADPDGVVLSGRGWGTAPGRRRSPSGRWPGRW
RGSSFPAPRWSGRRCGRSSRCSRSSPARHHVTRAHLPSFLPSFLPFFLPP
IAMPVRLLACLETSMDGALASAAAALALAAISLAMQAFKLEALGQTMAAV
AAGGGGEPGRFPAGETPWAQRLLQVLVVLLVAFAVRSYANGREAVQKAIE
AAAKLCSSDIMPATGVGGAGVG
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