prot_S-firma_M_contig9060.20000.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9060.20000.1
Unique Nameprot_S-firma_M_contig9060.20000.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length621
Homology
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Match: D8LB00_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB00_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 7.970e-32
Identity = 68/92 (73.91%), Postives = 78/92 (84.78%), Query Frame = 0
Query:   12 PDFGRRRGPFMRRLNRAALRRDADEAERTLKEALARPGMVDAAMCNAALNTFAHDGRWQVVLEVMQHMRESGIPPDAVTYTNAIKACGRAGE 103
            PDFGRRRGPFMRRL +A +RRD DEAER L++AL  PG+VD  MCNA LNTFA DGRWQVVLEVM+ MRE+G+ PDA+TYTNAIKACG+  E
Sbjct:  173 PDFGRRRGPFMRRLQQAGMRRDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGRE 264          
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Match: A0A813B4V3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B4V3_9DINO)

HSP 1 Score: 57.0 bits (136), Expect = 1.540e-5
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0
Query:   34 ADEAERTLKEALARPGMVDAAMCNAALNTFAHDGRWQVVLEVMQHMRESGIPPDAVTYTNAIKACGRAGE--WRRSVALLREMAAAD 118
            A +AER L    A P   D +  N A N  A  GR  +VLE+M+ M+ S + PD +TYT A+ ACG A    W  ++ LL+ M   D
Sbjct:  105 AGDAERALAWLQAMPERNDVSF-NTAANACAKLGRLDLVLEIMEEMKNSQVTPDLITYTVALTACGNAQPVLWEEALELLQTMQQKD 190          
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Match: A0A4D9DBJ1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBJ1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.870e-5
Identity = 39/106 (36.79%), Postives = 56/106 (52.83%), Query Frame = 0
Query:   19 GPFMRRLNRA---ALRRDADEAERTLKEALARPGM---VDAAMCNAALNTFAHDGRWQVVLEVMQHMRES-GIPPDAVTYTNAIKACGRAGEWRRSVALLREMAAA 117
            G   R  NRA   A R +  EA   +   +  PG+    D    NA +   +   R +  L+++  M E  G+ PD+V++T  I+ACGRAGEWRR++ALL  M  A
Sbjct:  605 GRLARLCNRAVTSAARDNRWEAAVAIHGVMQGPGLRVDPDVITYNAVMRALSETDRHEAALDLLDEMVERHGLAPDSVSFTTLIQACGRAGEWRRALALLHAMEGA 710          
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.200e-5
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:   69 WQVVLEVMQHMRESGIPPDAVTYTNAIKACGRAGEWRRSVALLREM 114
            W +VL +M+ MR  G+ PD  T+T AI ACG+AG+W R++ LL EM
Sbjct:  423 WAIVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEM 468          
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 3.560e-5
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0
Query:   69 WQVVLEVMQHMRESGIPPDAVTYTNAIKACGRAGEWRRSVALLREM 114
            W +VL +M+ MR  G+ PD  T+T AI ACG+AG+W R++ LL EM
Sbjct:  173 WALVLGLMEEMRAEGVAPDVFTFTTAITACGKAGQWERALDLLEEM 218          
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Match: A0A812STA9_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812STA9_SYMMI)

HSP 1 Score: 57.0 bits (136), Expect = 5.380e-5
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 0
Query:   34 ADEAERTLKEALARPGMVDAAMCNAALNTFAHDGRWQVVLEVMQHMRESGIPPDAVTYTNAIKACGRAGE--WRRSVALLREMAAAD 118
            A +AER L    A P   D +  N A N  A  GR  +VLE+M+ M+ S + PD +TYT A+ ACG A    W  ++ LL+ M   D
Sbjct:  256 AGDAERALAWLQAMPERNDVSF-NTAANACAKLGRLDLVLEIMEEMKNSQVTPDLITYTVALTACGNAQPVLWEEALELLQTMQQKD 341          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9060.20000.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LB00_ECTSI7.970e-3273.91PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A813B4V3_9DINO1.540e-540.23Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A4D9DBJ1_9STRA1.870e-536.79Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6H5KUL4_9PHAE2.200e-552.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP8_ECTSI3.560e-552.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812STA9_SYMMI5.380e-540.23Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 27..47
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 282..468
coord: 32..168
coord: 414..605
coord: 174..291
coord: 95..233
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 371..481
e-value: 2.5E-30
score: 107.1
coord: 482..607
e-value: 2.1E-28
score: 100.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 21..173
e-value: 1.3E-34
score: 121.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 242..370
e-value: 1.7E-32
score: 115.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 374..398
e-value: 0.49
score: 10.8
coord: 476..505
e-value: 0.029
score: 14.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 444..471
e-value: 6.0E-6
score: 24.1
coord: 545..578
e-value: 7.8E-6
score: 23.8
coord: 268..300
e-value: 1.6E-5
score: 22.7
coord: 476..508
e-value: 3.0E-4
score: 18.8
coord: 55..88
e-value: 2.3E-5
score: 22.3
coord: 127..159
e-value: 6.7E-4
score: 17.7
coord: 89..124
e-value: 5.4E-5
score: 21.1
coord: 408..441
e-value: 4.2E-5
score: 21.4
coord: 301..336
e-value: 4.6E-8
score: 30.8
coord: 374..407
e-value: 0.0016
score: 16.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 531..591
e-value: 1.1E-11
score: 44.7
coord: 146..207
e-value: 3.2E-8
score: 33.5
coord: 216..277
e-value: 6.5E-6
score: 26.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 52..98
e-value: 5.7E-8
score: 32.8
coord: 405..454
e-value: 4.2E-10
score: 39.7
coord: 298..346
e-value: 2.9E-8
score: 33.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 441..471
score: 10.468
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 264..298
score: 9.328
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 335..369
score: 9.01
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 473..507
score: 8.725
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 299..334
score: 9.81
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 194..228
score: 7.728
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 123..157
score: 9.624
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 370..404
score: 6.939
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 543..577
score: 11.718
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 406..440
score: 10.117
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 229..263
score: 9.898
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 87..122
score: 9.514
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 158..193
score: 9.975
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 508..542
score: 9.536
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 52..86
score: 10.523

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9060contigS-firma_M_contig9060:1171..3816 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9060.20000.1mRNA_S-firma_M_contig9060.20000.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9060 28..4250 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9060.20000.1 ID=prot_S-firma_M_contig9060.20000.1|Name=mRNA_S-firma_M_contig9060.20000.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=621bp
MRKGPNRRRDPPDFGRRRGPFMRRLNRAALRRDADEAERTLKEALARPGM
VDAAMCNAALNTFAHDGRWQVVLEVMQHMRESGIPPDAVTYTNAIKACGR
AGEWRRSVALLREMAAADGVEPNAIHYVCAMTACREAGRGAEAVGLLHEM
PRAGVEPNVICYNAAIAGCEGTEGGTEDALDLLRQMRAVGVRPNTQTYQA
AISAAGDKGGGEQAASILRTMEESGLAGDAKCYALAIKACGRGRLLWRAL
ETLREMQAKGVEPLVMGYNACITACGDGRQWEQAVALLREMPAAGISPTV
VSYSCAIAACGQSGQWEAALELLREMPQRAGIKPDAICYNNCMSALGRGE
QWGIAVDLLREMEDVGLPVKAQNYTVAIKACGDAGEGHVAVALLREMQAE
LGVPPNVISYTAAIAACGKGDMWSQAIELLREMTAMGVSANDRTYTAVIT
ACANSGQWEQALSLLREMPERPSIACYTSAMIACGNGGQWRKAVDLLREL
SDAGVSADRQAYHACLAACGKCGALEQATDLLREMDVAGKRPNVYAYNAA
LMACAAGGDTERALELLEEMTHRGIAPNRVTHESALAACGEHDTGEVERK
LSEMPARGTGTATTSPPDEK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf