prot_S-firma_M_contig906.19998.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig906.19998.1
Unique Nameprot_S-firma_M_contig906.19998.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length159
Homology
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: D7G9E0_ECTSI (PS II complex 12 kDa extrinsic protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E0_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 6.330e-91
Identity = 140/159 (88.05%), Postives = 151/159 (94.97%), Query Frame = 0
Query:    1 MKFTSTVAVLACVGSAQAFVPHALPTARMSS-TTTMSAESPASRGDFLKQAVGAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            MKFT TVAVLACVGSA AFVPHALP ARMS+ TTTMSAESPASRGDFLK A GA A+LGLAAPALAEVDNP+VPFLGGGDKIDVNNANVRAYIKL GMYP+AAGKIVSNGPY+SVSEIY+IKGL+NEEK+AIKKHES+F+T+DPQAMYTIDRINNGLYR
Sbjct:    1 MKFT-TVAVLACVGSASAFVPHALPAARMSARTTTMSAESPASRGDFLKSAAGAAALLGLAAPALAEVDNPVVPFLGGGDKIDVNNANVRAYIKLQGMYPSAAGKIVSNGPYSSVSEIYSIKGLSNEEKAAIKKHESRFITMDPQAMYTIDRINNGLYR 158          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A836CCI8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI8_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.350e-59
Identity = 100/159 (62.89%), Postives = 121/159 (76.10%), Query Frame = 0
Query:    1 MKFTSTVAVLACVGSAQAFVPHALPTARMSSTTTMSAESPASRGDFLKQAV-GAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            MK T  + VLA    AQAFV    P+A + ST       P  R  FLK A   AV  + +AAPALAE+DNP+VPFLGGGDK+D+NNANVRAYIK+PGMYP  AGK+VSNGPYA+V+++YNIKGL+ +EKS +KK+ES+FVTL+PQ MY IDRINNGLYR
Sbjct:    1 MKVTGAI-VLAAACGAQAFVA---PSAGVRSTQLSMTAQPVDRMAFLKSAATAAVVAVSVAAPALAEIDNPVVPFLGGGDKVDLNNANVRAYIKMPGMYPTVAGKVVSNGPYATVADVYNIKGLSEKEKSVLKKYESRFVTLEPQVMYGIDRINNGLYR 155          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: F0YKI8_AURAN (PS II complex 12 kDa extrinsic protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKI8_AURAN)

HSP 1 Score: 159 bits (401), Expect = 3.150e-47
Identity = 75/116 (64.66%), Postives = 92/116 (79.31%), Query Frame = 0
Query:   43 RGDFLKQAVGAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            R +FL +  GAV    +AAPALA+ D   +P+LGG  KID+NNAN+R Y KLPGMYP AAGKI SNGPY SVS++YNIKGL + EK+AIKK+ES+F+TL+P  MY IDR+NNGLYR
Sbjct:   22 RRNFLGKVAGAVTGASVAAPALADTDYAGLPYLGGSSKIDINNANIRVYAKLPGMYPGAAGKIASNGPYKSVSDVYNIKGLKDAEKAAIKKYESRFITLEPAPMYVIDRMNNGLYR 137          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A6U4G1G5_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4G1G5_9STRA)

HSP 1 Score: 156 bits (394), Expect = 5.470e-46
Identity = 88/151 (58.28%), Postives = 105/151 (69.54%), Query Frame = 0
Query:    9 VLACVGSAQAFVPHALPTARMSSTTTMSAESPASRGDFLKQAVGAVAV-LGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            +LA V +A AFVP          TT ++AE  A R +F  +A GA AV    AAPA A VD   + +LGG   +D+NNANVR Y+K+PGMYP AAGKIVSNGPY SVS++YNI GLT+ EK AIKK+ES+FV L P A Y IDRINNGLYR
Sbjct:    6 LLATVATAAAFVPQQAGP----QTTALNAE--AGRREFFGKAAGAAAVAFAAAAPANAVVDYENIAYLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVSNGPYKSVSDVYNIPGLTSAEKDAIKKYESRFVALKPSADYVIDRINNGLYR 150          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: K0TEZ3_THAOC (PS II complex 12 kDa extrinsic protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEZ3_THAOC)

HSP 1 Score: 152 bits (383), Expect = 2.480e-44
Identity = 86/156 (55.13%), Postives = 107/156 (68.59%), Query Frame = 0
Query:    6 TVAVLACVGSAQAFVPHALPTARMSSTTTMSAESPASRGDFLKQAVGAVAVLGLAA---PALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            T  +   + +A AF P+A P A+    T ++AE+ A R  FL    GA A  G AA    A A VD   V +LGGG  +DVNNANVRAY++LPGMYP+AAGKIV++GPY SV+++YNI GLT+ EK  IKK+ESKFV  DP A Y IDR+NNGLYR
Sbjct:    3 TAIIATLISTAAAFAPNAQPAAQ----TALNAEA-ADRRSFL----GAAAAFGAAAIPAAASARVDYENVAYLGGGSTVDVNNANVRAYLRLPGMYPSAAGKIVTHGPYKSVADVYNIPGLTSAEKEVIKKYESKFVAKDPAAEYVIDRVNNGLYR 149          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A7S1XZL8_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZL8_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.850e-42
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 0
Query:   59 LAAP--ALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            LAAP  A+A+VD   +P+LGG +KID+NNANVR Y KLPGMYPNAA KI SNGPY SVS++Y+IKGL+ +EKS IKK+ES+ +TL+P AMY IDR NNGLYR
Sbjct:   52 LAAPFAAMADVDYAGLPYLGGSEKIDINNANVRVYAKLPGMYPNAAAKITSNGPYKSVSDVYSIKGLSEKEKSVIKKYESRLITLEPSAMYVIDRTNNGLYR 153          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A7S1Z9N8_TRICV (PS II complex 12 kDa extrinsic protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z9N8_TRICV)

HSP 1 Score: 145 bits (365), Expect = 1.370e-41
Identity = 86/153 (56.21%), Postives = 108/153 (70.59%), Query Frame = 0
Query:    8 AVLACVGS-AQAFVPHALPTARMSSTTTMSAESPASRGDFLKQAVGA-VAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            AVLA V + A AF P+  P    +S+T ++AE  ASR DFL  A+ A VA +  AAPA A  D   + FLGG   +D+NNANVR Y+K+PGMYP AAGKIV+NGPY +VS+IY+I GLT  EK  +KK+ES+FV L P A + IDR+NNGLYR
Sbjct:    4 AVLASVVAVAAAFAPNQAP----ASSTALNAE--ASRKDFLAGAMAAGVAAVAGAAPANAVRDYENIGFLGGSSTVDINNANVRVYLKMPGMYPAAAGKIVTNGPYKAVSDIYSIPGLTAGEKEVMKKYESRFVALPPSADFVIDRVNNGLYR 150          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A7S3L326_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L326_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.570e-41
Identity = 73/118 (61.86%), Postives = 86/118 (72.88%), Query Frame = 0
Query:   41 ASRGDFLKQAVGAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            A R +FL  AV A A L +   ALA  D   + +LGG D ID+NNANVR Y+KLPGMYP+AAGKI +NGPY SV +IYNI GLT++EK  +KK+ESKF  L P A Y IDRINNGLYR
Sbjct:   30 ADRREFLSAAVVAAAGLAVPGSALAVRDYENLAYLGGSDTIDINNANVRVYLKLPGMYPSAAGKIAANGPYNSVGDIYNIPGLTSKEKEVMKKYESKFTALKPSADYVIDRINNGLYR 147          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A7S2GXA3_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GXA3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.910e-41
Identity = 74/128 (57.81%), Postives = 92/128 (71.88%), Query Frame = 0
Query:   32 TTTMSAESPASRGDFL-KQAVGAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            +T ++AE  A R +F    A  A+   G+AAPA A VD   + +LGG   +D+NNANVR Y+K+PGMYP  AGKIVSNGPYASVS++YNIKGLT+ EK  +KK+ES+F    P A Y IDRINNGLYR
Sbjct:   25 STALNAE--AGRREFFGSAAAAAIGAFGVAAPASAVVDYENIGYLGGSSIVDLNNANVRVYLKMPGMYPTVAGKIVSNGPYASVSDVYNIKGLTSGEKEILKKYESRFTAKAPSADYVIDRINNGLYR 150          
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Match: A0A7S4MT81_9STRA (PS II complex 12 kDa extrinsic protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MT81_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.030e-41
Identity = 89/162 (54.94%), Postives = 106/162 (65.43%), Query Frame = 0
Query:    1 MKFTSTVAVLACVGSAQAFVP--HALPTARMSSTTTMSAESPASRGDFLKQA--VGAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPNAAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTIDRINNGLYR 158
            MK     + LAC   A AF P  + +P     +TT ++AE  ASR +FL  A   GA  V G AAPA A  D   V FLGG   +DVNNANVR Y+K+PGMYP AAGKI +NGPY SV++IYNI GLT +EK  +KK+ES+F  L P A Y IDRINNGLYR
Sbjct:    1 MKLAVLASTLAC---AAAFAPSQNGVP-----ATTALNAE--ASRKEFLAGAFATGAAVVAG-AAPAYAIRDYDNVAFLGGSQTVDVNNANVRVYLKMPGMYPAAAGKIAANGPYKSVADIYNISGLTAKEKEIMKKYESRFTALPPSADYVIDRINNGLYR 151          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig906.19998.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E0_ECTSI6.330e-9188.05PS II complex 12 kDa extrinsic protein n=2 Tax=Ect... [more]
A0A836CCI8_9STRA1.350e-5962.89PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
F0YKI8_AURAN3.150e-4764.66PS II complex 12 kDa extrinsic protein n=1 Tax=Aur... [more]
A0A6U4G1G5_9STRA5.470e-4658.28PS II complex 12 kDa extrinsic protein n=1 Tax=Min... [more]
K0TEZ3_THAOC2.480e-4455.13PS II complex 12 kDa extrinsic protein n=1 Tax=Tha... [more]
A0A7S1XZL8_9STRA1.850e-4268.63PS II complex 12 kDa extrinsic protein n=1 Tax=Pha... [more]
A0A7S1Z9N8_TRICV1.370e-4156.21PS II complex 12 kDa extrinsic protein n=1 Tax=Tri... [more]
A0A7S3L326_9STRA3.570e-4161.86PS II complex 12 kDa extrinsic protein n=1 Tax=Amp... [more]
A0A7S2GXA3_9STRA3.910e-4157.81PS II complex 12 kDa extrinsic protein n=1 Tax=Hel... [more]
A0A7S4MT81_9STRA4.030e-4154.94PS II complex 12 kDa extrinsic protein n=1 Tax=Odo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010527Photosystem II PsbU, oxygen evolving complexPFAMPF06514PsbUcoord: 78..157
e-value: 2.5E-28
score: 97.9
NoneNo IPR availableGENE3D1.10.150.320coord: 65..148
e-value: 2.0E-26
score: 93.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..158
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.615
NoneNo IPR availableSUPERFAMILY81585PsbU/PolX domain-likecoord: 69..158

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig906contigS-firma_M_contig906:23147..26522 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig906.19998.1mRNA_S-firma_M_contig906.19998.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig906 21109..26522 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig906.19998.1 ID=prot_S-firma_M_contig906.19998.1|Name=mRNA_S-firma_M_contig906.19998.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=159bp
MKFTSTVAVLACVGSAQAFVPHALPTARMSSTTTMSAESPASRGDFLKQA
VGAVAVLGLAAPALAEVDNPIVPFLGGGDKIDVNNANVRAYIKLPGMYPN
AAGKIVSNGPYASVSEIYNIKGLTNEEKSAIKKHESKFVTLDPQAMYTID
RINNGLYR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010527PSII_PsbU