prot_S-firma_M_contig905.19985.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig905.19985.1
Unique Nameprot_S-firma_M_contig905.19985.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length43
Homology
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BLAST of mRNA_S-firma_M_contig905.19985.1 vs. uniprot
Match: D8LJ99_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ99_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.550e-9
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0 
Query:    1 MRGIFLSLGFRKRDDGGLVVLDPLAPNTLECAAAVLKELSTA 42
            MRG+FL+LGFRKR  GG+V LDPLAPNTL+C A  L+ L  A
Sbjct:   85 MRGLFLALGFRKRS-GGIVGLDPLAPNTLDCVAVALQGLEAA 125
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig905.19985.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ99_ECTSI3.550e-966.67PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig905contigS-firma_M_contig905:673..1160 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig905.19985.1mRNA_S-firma_M_contig905.19985.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig905 638..1224 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig905.19985.1 ID=prot_S-firma_M_contig905.19985.1|Name=mRNA_S-firma_M_contig905.19985.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=43bp
MRGIFLSLGFRKRDDGGLVVLDPLAPNTLECAAAVLKELSTA*
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