prot_S-firma_M_contig9041.19977.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9041.19977.1
Unique Nameprot_S-firma_M_contig9041.19977.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length303
Homology
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BLAST of mRNA_S-firma_M_contig9041.19977.1 vs. uniprot
Match: D7G873_ECTSI (Chromodomain-helicase-DNA-binding protein 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G873_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 1.870e-79
Identity = 176/255 (69.02%), Postives = 194/255 (76.08%), Query Frame = 0 
Query:   25 KPVYYGVDEARKRVALKCTSCGKQGALIGCHVQSCSISTHFACARRAGWRFGDPDADGKLFLCEMHRNQGQVRFERKTPAKKGPRKSAPKTPNKGKGGTPSSKXXXXXXXXXDKTDGGDGVEDVDGDDVKTPKAKKPRRSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPPPRVGRDGELVVQCPCGVAELEAQGYVQCDECKAWQHLECAGTTSEDVEDAGGSFVCQDCVD 279
            KPVYYGVDEARKR+ LKCTSCGKQGALI CHVQSCS++TH+ CARR GW+FG  D+DGK+FLC MHRN+GQVRFERK PAK+GPRKS  KTP+KGKGGTP   XXXXXXXXX        + D DGD +K+PKAKK RRSPSXXXXXXXXXXXX       XXXXXXXXXX                    RPP R+G DG+ VVQCPCGVAELE QGYVQCD C+ W HLECAGTT+EDVEDAGGSF C DCV+
Sbjct: 3079 KPVYYGVDEARKRIGLKCTSCGKQGALIPCHVQSCSVTTHYGCARREGWKFGGHDSDGKIFLCVMHRNEGQVRFERKAPAKRGPRKSVSKTPSKGKGGTPXXXXXXXXXXXXXXXXSEPAL-DGDGD-LKSPKAKKARRSPSXXXXXXXXXXXXESGDSKRXXXXXXXXXXAR------------------RPPVRLGEDGKPVVQCPCGVAELEPQGYVQCDNCQVWLHLECAGTTAEDVEDAGGSFSCLDCVE 3313
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BLAST of mRNA_S-firma_M_contig9041.19977.1 vs. uniprot
Match: A0A7S3ZQ65_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQ65_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.270e-5
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   27 VYYGVDEARKRVALKCTSCGKQGALIGCHVQSCSISTHFACAR-RAGWRFGDPDADGK-LFLCEMHRNQGQVRF 98
            V+ G+   R+   LKC SCGK+GA +GC V+ C  S H  CA  R+G    + + +   +F C  HRN+G  R+
Sbjct:  483 VFRGLSALRRGRLLKCFSCGKRGATVGCGVKECPRSFHAPCALFRSGGCVDEGNGESSNVFYCSAHRNKGTDRW 556
[Close]
BLAST of mRNA_S-firma_M_contig9041.19977.1 vs. uniprot
Match: A0A8J2SE64_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SE64_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.590e-5
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 0 
Query:   27 VYYGVDEARKRVALKCTSCGKQGALIGCHVQSCSISTHFACAR-RAGWRFGDPDADGK-LFLCEMHRNQGQVRF 98
            V+ G+   R+   LKC SCGK+GA +GC V+ C  S H  CA  R+G    + + +   +F C  HRN+G  R+
Sbjct:  623 VFRGLSALRRGRLLKCFSCGKRGATVGCGVKECPRSFHAPCALFRSGGCVDEGNGESSNVFYCSAHRNKGTDRW 696
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9041.19977.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G873_ECTSI1.870e-7969.02Chromodomain-helicase-DNA-binding protein 8 n=2 Ta... [more]
A0A7S3ZQ65_9STRA6.270e-539.19Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A8J2SE64_9STRA6.590e-539.19Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 41..91
e-value: 0.018
score: 24.2
coord: 230..278
e-value: 7.6E-4
score: 28.8
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 231..278
e-value: 2.2E-7
score: 30.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 15..93
e-value: 2.9E-13
score: 51.9
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 221..283
e-value: 2.9E-13
score: 51.1
NoneNo IPR availablePFAMPF13771zf-HC5HC2Hcoord: 33..91
e-value: 2.7E-9
score: 37.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 231..277
IPR034732Extended PHD (ePHD) domainPROSITEPS51805EPHDcoord: 1..91
score: 12.161
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 37..92
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 223..278

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9041contigS-firma_M_contig9041:1878..4008 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9041.19977.1mRNA_S-firma_M_contig9041.19977.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9041 1878..4009 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9041.19977.1 ID=prot_S-firma_M_contig9041.19977.1|Name=mRNA_S-firma_M_contig9041.19977.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=303bp
GDSLAVAVAGAGAGAGAGAASSKRKPVYYGVDEARKRVALKCTSCGKQGA
LIGCHVQSCSISTHFACARRAGWRFGDPDADGKLFLCEMHRNQGQVRFER
KTPAKKGPRKSAPKTPNKGKGGTPSSKGKGKGGGGGDKTDGGDGVEDVDG
DDVKTPKAKKPRRSPSSAANAAAAAAAGGAGGVKPEAADSSKKGGGGVGG
GGGFGPRGGGAGVVTRPPPRVGRDGELVVQCPCGVAELEAQGYVQCDECK
AWQHLECAGTTSEDVEDAGGSFVCQDCVDGGGGGGGFGGGGSSSSNANNG
ARP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR034732EPHD
IPR019786Zinc_finger_PHD-type_CS
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR001965Znf_PHD