prot_S-firma_M_contig9024.19961.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9024.19961.1
Unique Nameprot_S-firma_M_contig9024.19961.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length167
Homology
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BLAST of mRNA_S-firma_M_contig9024.19961.1 vs. uniprot
Match: D7G6A7_ECTSI (Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6A7_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 8.330e-63
Identity = 95/113 (84.07%), Postives = 102/113 (90.27%), Query Frame = 0 
Query:   55 STKNPEAAAASPKVTLYEEFSRYADRTSVAQEIIFEITSKEHFDDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLIAKHPEVLCCKINKTHNE 167
            +  +   AA + KVTLYEEFSRYADR SVAQE+IFEITS EHF+DVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQ+HAGWCRVCKGLQPKLLKLI KHPEVLCCKINK H+E
Sbjct:   12 AASSASGAADTAKVTLYEEFSRYADRRSVAQEVIFEITSAEHFEDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQIHAGWCRVCKGLQPKLLKLITKHPEVLCCKINKAHHE 124
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BLAST of mRNA_S-firma_M_contig9024.19961.1 vs. uniprot
Match: A0A835Z3K6_9STRA (Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.490e-31
Identity = 55/99 (55.56%), Postives = 75/99 (75.76%), Query Frame = 0 
Query:   70 LYEEFSRYADRTSVAQEIIFEITSKEHFDDVVSRAAGADEHE-GYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLIAKHPEVLCCKINKTHNE 167
            +YEE S+YAD  +VA + + EITS EH D +++ AA  +  + GY D  GN R+PH+L+M+QVHA WCR C G++PKLLKL A+HPEVLCCK+NK ++E
Sbjct:    1 MYEESSKYADPHAVATDCVVEITSNEHLDRILATAAQVENPDAGYVDHHGNQRLPHRLIMIQVHANWCRACIGVRPKLLKLCARHPEVLCCKLNKGNHE 99
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BLAST of mRNA_S-firma_M_contig9024.19961.1 vs. uniprot
Match: A0A7R9U8D8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8D8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.080e-17
Identity = 54/139 (38.85%), Postives = 72/139 (51.80%), Query Frame = 0 
Query:   33 PRGGAHFRPRAVSRVLRMA---EDISTKNPEAAAASPKV--TLYEEFSRYADRTSVAQEIIFEITSKEHFDDVVSRAAGADEHEGYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLIAKHPEVLCCKINKTHN 166
            PR  A FR     R LR       +    P  A  + +     YEE S YAD T+ A E + ++TS+E FD ++S AAGA       +     + PHK++M+ VHA WCR CK L  + LK+   HPEVLC K+N   N
Sbjct:   32 PRRAAAFRSGVQRRSLRRTFADASVLASTPLRAQKAEEFEDVYYEECSFYADATACAMETLIDVTSQEQFDFIISHAAGA-------NPLSPDQKPHKMVMLMVHATWCRKCKYLMKQYLKVAKAHPEVLCLKLNLATN 163
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9024.19961.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6A7_ECTSI8.330e-6384.07Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A835Z3K6_9STRA5.490e-3155.56Thioredoxin n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7R9U8D8_9STRA2.080e-1738.85Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013766Thioredoxin domainPFAMPF00085Thioredoxincoord: 123..166
e-value: 2.2E-5
score: 24.4
NoneNo IPR availableGENE3D3.40.30.10coord: 77..167
e-value: 9.8E-9
score: 36.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..167
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.631
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 86..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9024contigS-firma_M_contig9024:702..3133 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9024.19961.1mRNA_S-firma_M_contig9024.19961.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9024 702..3241 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9024.19961.1 ID=prot_S-firma_M_contig9024.19961.1|Name=mRNA_S-firma_M_contig9024.19961.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=167bp
MRCACLGLVLLQPGVYGFAPSLASPRSVSWAPPRGGAHFRPRAVSRVLRM
AEDISTKNPEAAAASPKVTLYEEFSRYADRTSVAQEIIFEITSKEHFDDV
VSRAAGADEHEGYEDAQGNWRVPHKLMMVQVHAGWCRVCKGLQPKLLKLI
AKHPEVLCCKINKTHNE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR013766Thioredoxin_domain