prot_S-firma_M_contig9016.19953.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9016.19953.1
Unique Nameprot_S-firma_M_contig9016.19953.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length266
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9016.19953.1 vs. uniprot
Match: D8LTR9_ECTSI (Mitochondrial inner membrane protease subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.780e-14
Identity = 34/53 (64.15%), Postives = 39/53 (73.58%), Query Frame = 0 
Query:   73 SWAQEGLSFVREMTSLVCTYYCFKEYVAEPCLVRGPSMRPTIEHGSWLLVDKV 125
            SW  EG  FVR+M   VC Y C +EYV EPCLV GPSMRPTIEH S LL++K+
Sbjct:   76 SWGHEGAKFVRQMAWFVCAYQCLREYVVEPCLVHGPSMRPTIEHNSLLLINKM 128
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9016.19953.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTR9_ECTSI2.780e-1464.15Mitochondrial inner membrane protease subunit n=2 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036286LexA/Signal peptidase-like superfamilySUPERFAMILY51306LexA/Signal peptidasecoord: 98..127

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9016contigS-firma_M_contig9016:3438..4235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9016.19953.1mRNA_S-firma_M_contig9016.19953.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9016 3438..4235 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9016.19953.1 ID=prot_S-firma_M_contig9016.19953.1|Name=mRNA_S-firma_M_contig9016.19953.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=266bp
MSALRARSVCCGALRHTSRTSSSTSRAFGSSTRGATRVVGGGSAGGGGSQ
QKKGQSQQQQQQQNKGGGDRRGSWAQEGLSFVREMTSLVCTYYCFKEYVA
EPCLVRGPSMRPTIEHGSWLLVDKVNVPTEHGSGSLRCGCRTPAGRRLLQ
KYRAHATMPAYRAETKDAHRSHDCCCRMYRGESHLCATRLQTLGKACSAA
SLAQPPLFPSAPSPLGIFSWDVHGVYRALDLSPRLHSRQYHLYVRGSPSA
APYLMKLLAGLSRFVV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036286LexA/Signal_pep-like_sf