prot_S-firma_M_contig8969.19869.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig8969.19869.1
Unique Nameprot_S-firma_M_contig8969.19869.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length202
Homology
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BLAST of mRNA_S-firma_M_contig8969.19869.1 vs. uniprot
Match: A0A6H5KX54_9PHAE (Exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX54_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.200e-5
Identity = 47/89 (52.81%), Postives = 57/89 (64.04%), Query Frame = 0 
Query:   33 EERWLVGEVTRHRYKLISVVSRVVPVVAEDKTNKKXXXXXXXXXXXXXXXXXXVE--------GSAAATAGEAEEPTEEGHLVLHVKAP 113
            E+RW+V  V ++RY+L+SVVSRVVPVV   K  KK   XXXXXXXXXXX                A ++ GEA+   EEGHLVLHV+AP
Sbjct: 1102 EDRWVVDGVRQYRYRLMSVVSRVVPVV---KGKKKAAGXXXXXXXXXXXAAAGTAXXXXXXXGAGAGSSPGEADATIEEGHLVLHVRAP 1187
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8969.19869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX54_9PHAE4.200e-552.81Exonuclease domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005398Tubby, N-terminalPRINTSPR01574TUBBYPROTEINcoord: 4..29
score: 35.9
coord: 122..148
score: 37.04

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8969contigS-firma_M_contig8969:2365..3313 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8969.19869.1mRNA_S-firma_M_contig8969.19869.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig8969 2365..3436 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig8969.19869.1 ID=prot_S-firma_M_contig8969.19869.1|Name=mRNA_S-firma_M_contig8969.19869.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=202bp
GTAAGTAAPAPSTAENKKGESAAGAGAGSPPPEERWLVGEVTRHRYKLIS
VVSRVVPVVAEDKTNKKKKKKRAAGATATATATAGVEGSAAATAGEAEEP
TEEGHLVLHVKAPAATATSKAAPANPAAKPSSSLSSSSSRASATPPRPSS
GGTAAAAAAAAAQRARVKAPRGRTGTRAALRVPVWRKRTPGPVPVRSMFV
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005398Tubby_N