prot_S-firma_M_contig8935.19837.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig8935.19837.1
Unique Nameprot_S-firma_M_contig8935.19837.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length85
Homology
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BLAST of mRNA_S-firma_M_contig8935.19837.1 vs. uniprot
Match: D7G0D1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 8.180e-7
Identity = 36/85 (42.35%), Postives = 50/85 (58.82%), Query Frame = 0 
Query:    3 DNDKRAAPSRVLSCEACRMWSMVGDRCASLGIPLPGDMFVSA---------VGGGHLSDNGVAATAAATATALAALPDTGPVVRV 78
            +N+ +  P+    C+ACRMWSMVG+RCASLGI L  ++  +A         VGGG +  + +A    AT  A A+ PD GP +RV
Sbjct:  135 NNNNKDVPT-ASGCDACRMWSMVGERCASLGISLSNNLLFAANGSIEGGAGVGGGRVDGSRLAG--GATTAATASEPD-GPALRV 215
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BLAST of mRNA_S-firma_M_contig8935.19837.1 vs. uniprot
Match: A0A6H5KZ70_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ70_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.150e-5
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0 
Query:   16 CEACRMWSMVGDRCASLGIPLPGDMFVSAVG---------GGHLSDNGVAATAAATATALAALPDTGPVVRV 78
            C+ACRMWS VG+RC+SLGI LP ++  +A G         GG +  N +A    AT  A A+ PD GP +RV
Sbjct:  148 CDACRMWSTVGERCSSLGISLPNNILFAASGNIEGEAGDGGGRVECNRLAG--GATTAATASEPD-GPELRV 216
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8935.19837.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0D1_ECTSI8.180e-742.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZ70_9PHAE2.150e-545.83C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8935contigS-firma_M_contig8935:104..358 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8935.19837.1mRNA_S-firma_M_contig8935.19837.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig8935 2..1705 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig8935.19837.1 ID=prot_S-firma_M_contig8935.19837.1|Name=mRNA_S-firma_M_contig8935.19837.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=85bp
MGDNDKRAAPSRVLSCEACRMWSMVGDRCASLGIPLPGDMFVSAVGGGHL
SDNGVAATAAATATALAALPDTGPVVRVDTVANE*
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