prot_S-firma_M_contig8929.19827.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig8929.19827.1
Unique Nameprot_S-firma_M_contig8929.19827.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length258
Homology
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: D7FMB3_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMB3_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 2.000e-88
Identity = 162/282 (57.45%), Postives = 183/282 (64.89%), Query Frame = 0
Query:   24 MVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAA-----------------------IGKDCHLQPDGVAP-----SGH---------------PRFVPD----LSPVEAILVKRMREAFLGYQSYYDRERAAHESEIRGLTTQVLAAEREAMDVAGAPAIPTAETPASKVTALMKAITDSRARFKAGMEALLQDFDEHAKNATPPPSLLPSTVTVILASRGVRFNTKVLPTDFPENLYDK 258
            MVKDCVVTPCGHSFCR CAGDA+TRKHCCPVCQ+GVIGGEAGLIRNFLVDEVTS L++ATEDTDV YMRLLF  A                       +G D    P G  P     +G+               PR V      LSPVE +LV+RMREAFLGYQSYY RERAAH +E+  LT Q+ A  RE       P    AET A +  AL  AI +S ARF AGMEALL+DFD HA  A PPPSLLP TVT+I+ASRGVRF+T++LPT FPEN+Y K
Sbjct:    1 MVKDCVVTPCGHSFCRSCAGDAVTRKHCCPVCQVGVIGGEAGLIRNFLVDEVTSTLRRATEDTDVAYMRLLFDTAAGGTAGAXXXXXXXXXXXXXHPHVGSDDARFPIGFPPKPPFSAGNFRGETQPVEQNQPPLPRGVXXXXXXLSPVEEVLVRRMREAFLGYQSYYARERAAHAAEVSDLTAQLSAVRREETT----PCQGQAETRARRAAALQGAIQESEARFNAGMEALLRDFDAHAAAALPPPSLLPCTVTLIVASRGVRFDTQLLPTHFPENIYGK 278          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: A0A2P6NT33_9EUKA (NADPH:quinone reductase-like protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NT33_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 2.210e-19
Identity = 67/271 (24.72%), Postives = 118/271 (43.54%), Query Frame = 0
Query:    8 PVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIGKDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYYDRERAAHESEIRGLTT-----QVLAAEREAMDVAGAPAIPTAETPASKVTALMKAITDSRA--------------RFKAGMEALLQDFDEHAKNATPPPSLLPSTVTVILASRGVRFNTKVL-PTDFPENLYDK 258
            P+ +L+    CP+CF ++ +CV TPCGH+FC  C  + + RKH CP C   V   +  L++N   D + + +Q+  E     Y   +       D   +      S      P+ +P+E +  K ++++ + Y +YY +E      +IR   T     QVL  + EA           AET    V A   A++ S                 F   +  L + ++ +  +  P P+ LP  ++V +A R +     ++ PT+   ++Y+K
Sbjct:  363 PLSSLMEEFVCPICFNVITNCVTTPCGHNFCDHCIRECLNRKHACPCCNASVKAPD--LLKNHHHDRIVTIIQREKEIASKKYFERVIKGTKDDDKEDENKNDPASPKKTIEPNGTPIEVLFQKHLQKSLMSYDAYY-KELEEKRDQIRSKQTDFYAGQVLTLQNEAE----------AETRKGNVEAGSNALSKSNQLKEEWHKKNTKLDDSFTESIRLLQESYEGYLSSVAPAPNFLPIAISVSVAGRDIAIKKLIVKPTENSRDVYNK 620          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: A0A6B2L7T0_9EUKA (RING-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L7T0_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 3.530e-15
Identity = 57/247 (23.08%), Postives = 106/247 (42.91%), Query Frame = 0
Query:    2 DRAKFAPVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIGKDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYYDRERAAHESEIRGLTTQVLAAEREAMDVAGAPAIPTAETPASKVTALMKAITDSRARFKAGMEALLQDFDEHAKNATPPPSLLPSTVTVILASRGVRF-NTKVL 247
            D   F PV+ +     CP+CFE++ DC +TPC H+FC+ C  + + RK CCP C    +  +    + F        +    ED D            GK+         P  HP    + SP+E +    ++++   Y+ YY + +   E   + + T +   + +++D A           A K   L K +++    ++   E L +  ++H + + P   + P  +T+ + ++   F N +VL
Sbjct:    6 DLPLFIPVNRVTEEFICPICFEIINDCHMTPCSHNFCKNCLAECLNRKKCCPFCNAATLPQQMQPNKQF-----QKVIAIVMEDKDKASKEYFSNLISGKE---------PPKHPSASLERSPIEQVFQSELQKSLAEYEEYYQKLKKKKEQWEQQVQTDI---KNKSLDAA-----------AKKD--LEKKLSEISIVYQNSTELLKKSLEKHLQASIPRIDIFPVLLTISIPTKKQTFENVEVL 222          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: A0A8J4VAB3_9MYCE (RING-type domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4VAB3_9MYCE)

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-10
Identity = 37/137 (27.01%), Postives = 65/137 (47.45%), Query Frame = 0
Query:    8 PVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIGKDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYY 144
            PV      +SCP+CF  +K+  +T CGH+FC  C  + I R H CP C       +  L++N   D++ S ++   E++   Y+  +    +  D ++  +  A S         SPVE +  K +  + L ++ +Y
Sbjct:   13 PVKPFADEISCPICFNTIKNSFMTKCGHNFCEVCIFECINRNHRCPCCNTEAT--KESLVKNHQFDKIISIIESEKEESSKNYVSGIMSKKL--DVNIDDNNTANSLK-------SPVEQVFNKYLTTSILSFEGFY 138          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: A0A7S2G126_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G126_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.040e-9
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 0
Query:   12 LVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLL-----FGAAIG 100
            +V+A+ C +C E  ++ V+TPCGH++CRKC  + +  KH CP C   V   +  L+RN  VD     L       D      L     FGAA+G
Sbjct:   86 VVQAMQCVVCVEPCQEAVITPCGHTYCRKCITECLNLKHSCPTCSQPVTVDQ--LVRNHAVDGAVDLLYSQAAGADDALAASLIAGTGFGAAVG 177          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: UPI000B45B3A0 (E3 ubiquitin-protein ligase TRIM62-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B45B3A0)

HSP 1 Score: 62.4 bits (150), Expect = 1.480e-7
Identity = 35/147 (23.81%), Postives = 64/147 (43.54%), Query Frame = 0
Query:    2 DRAKFAPVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIGKDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYYDRER 148
            D      V+ L   L C +C  ++K+ V+T CGH +C +C  + + R H CP C   V   E  + ++   D +  A+ Q    ++  Y   L  +A+ +                    LSP+E +L   ++E+   ++ Y+ + R
Sbjct:    4 DLPLLVSVNALSDYLYCSICMNVMKETVMTSCGHRYCSRCIKEWVDRNHKCPCCNKAVTMTE--VFKDHQFDCLIDAINQEKTKSEAKYFESLINSAVSES--------------HTTTTLSPIETVLKDHLKESLASHERYFQKLR 134          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: A0A210QGP8_MIZYE (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210QGP8_MIZYE)

HSP 1 Score: 62.4 bits (150), Expect = 1.580e-7
Identity = 35/147 (23.81%), Postives = 64/147 (43.54%), Query Frame = 0
Query:    2 DRAKFAPVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIGKDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYYDRER 148
            D      V+ L   L C +C  ++K+ V+T CGH +C +C  + + R H CP C   V   E  + ++   D +  A+ Q    ++  Y   L  +A+ +                    LSP+E +L   ++E+   ++ Y+ + R
Sbjct:    4 DLPLLVSVNALSDYLYCSICMNVMKETVMTSCGHRYCSRCIKEWVDRNHKCPCCNKAVTMTE--VFKDHQFDCLIDAINQEKTKSEAKYFESLINSAVSES--------------HTTTTLSPIETVLKDHLKESLASHERYFQKLR 134          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: UPI0014589143 (uncharacterized protein LOC117334549 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014589143)

HSP 1 Score: 58.9 bits (141), Expect = 2.150e-6
Identity = 33/147 (22.45%), Postives = 64/147 (43.54%), Query Frame = 0
Query:    2 DRAKFAPVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIGKDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYYDRER 148
            D      V +L   L C +C  ++K+ V+T CGH +C  C  + + R H CP C   +  G   + ++   D +  A+ +    ++  Y   L  +A+                 +   +LSP+E +L   ++E+   ++ Y+ + R
Sbjct:    4 DLPLLVSVTSLSDYLCCSICMNVMKETVMTCCGHRYCNHCIKEWVDRNHKCPCCNKAL--GMTEVFKDHQFDCLIDAINKEKTKSETKYFESLINSAVDAS--------------QAEVELSPIETVLKDHLKESLAAHEKYFQKLR 134          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: UPI001887E414 (E3 ubiquitin-protein ligase COP1-like n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=UPI001887E414)

HSP 1 Score: 55.8 bits (133), Expect = 3.530e-6
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   18 CPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATED 85
            CP+CF+++++  +TPCGH+FC KC    +   + CP C   VI  +  +  NFL++E+ +  +Q   D
Sbjct:   46 CPICFDIIEEAHMTPCGHTFCFKCITTGLEYSNRCPKCNF-VIEKKEQIYPNFLLNELITKYKQKAAD 112          
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Match: UPI0018978D2A (E3 ubiquitin-protein ligase COP1-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018978D2A)

HSP 1 Score: 56.2 bits (134), Expect = 5.980e-6
Identity = 24/68 (35.29%), Postives = 41/68 (60.29%), Query Frame = 0
Query:   18 CPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKHCCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATED 85
            CP+CF+++++  +TPCGH+FC KC    +   + CP C   VI  +  +  NFL++E+ +  +Q   D
Sbjct:   46 CPICFDVIEEAHMTPCGHTFCYKCITTGLEYSNRCPKCNF-VIEKKEQIYPNFLLNELITKYKQKAAD 112          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8929.19827.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FMB3_ECTSI2.000e-8857.45RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A2P6NT33_9EUKA2.210e-1924.72NADPH:quinone reductase-like protein n=1 Tax=Plano... [more]
A0A6B2L7T0_9EUKA3.530e-1523.08RING-type domain-containing protein n=1 Tax=Arcell... [more]
A0A8J4VAB3_9MYCE2.600e-1027.01RING-type domain-containing protein n=1 Tax=Polysp... [more]
A0A7S2G126_9STRA1.040e-936.17Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
UPI000B45B3A01.480e-723.81E3 ubiquitin-protein ligase TRIM62-like n=1 Tax=Mi... [more]
A0A210QGP8_MIZYE1.580e-723.81Postreplication repair E3 ubiquitin-protein ligase... [more]
UPI00145891432.150e-622.45uncharacterized protein LOC117334549 n=1 Tax=Pecte... [more]
UPI001887E4143.530e-635.29E3 ubiquitin-protein ligase COP1-like n=1 Tax=Rhip... [more]
UPI0018978D2A5.980e-635.29E3 ubiquitin-protein ligase COP1-like n=1 Tax=Derm... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..168
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 18..55
e-value: 1.4E-8
score: 34.4
NoneNo IPR availablePANTHERPTHR44080FAMILY NOT NAMEDcoord: 14..138
NoneNo IPR availablePANTHERPTHR44080:SF1E3 UBIQUITIN-PROTEIN LIGASE COP1coord: 14..138
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 10..80
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 18..55
e-value: 1.7E-6
score: 37.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 18..56
score: 12.017
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 5..91
e-value: 2.5E-15
score: 58.0
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 33..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8929contigS-firma_M_contig8929:597..2100 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8929.19827.1mRNA_S-firma_M_contig8929.19827.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig8929 597..2100 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig8929.19827.1 ID=prot_S-firma_M_contig8929.19827.1|Name=mRNA_S-firma_M_contig8929.19827.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=258bp
MDRAKFAPVDTLVRALSCPLCFEMVKDCVVTPCGHSFCRKCAGDAITRKH
CCPVCQIGVIGGEAGLIRNFLVDEVTSALQQATEDTDVGYMRLLFGAAIG
KDCHLQPDGVAPSGHPRFVPDLSPVEAILVKRMREAFLGYQSYYDRERAA
HESEIRGLTTQVLAAEREAMDVAGAPAIPTAETPASKVTALMKAITDSRA
RFKAGMEALLQDFDEHAKNATPPPSLLPSTVTVILASRGVRFNTKVLPTD
FPENLYDK
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING