prot_S-firma_M_contig8910.19807.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig8910.19807.1
Unique Nameprot_S-firma_M_contig8910.19807.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length88
Homology
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BLAST of mRNA_S-firma_M_contig8910.19807.1 vs. uniprot
Match: D8LJG4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG4_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.150e-8
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:   16 SLLDVASVPGLGLGPLVPTTTGELVSCSLLQQARRA 51
            SLLDVASVPGLG  PLVP TTGELVSCS+LQQ  RA
Sbjct: 1178 SLLDVASVPGLGSWPLVPITTGELVSCSMLQQVVRA 1213
[Close]
BLAST of mRNA_S-firma_M_contig8910.19807.1 vs. uniprot
Match: A0A6H5K688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K688_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 5.180e-8
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 
Query:   16 SLLDVASVPGLGLGPLVPTTTGELVSCSLLQQARRA 51
            SLLDVASVPGLG  PLVP TTGELVSCS+LQQ  RA
Sbjct: 3137 SLLDVASVPGLGSWPLVPITTGELVSCSMLQQVVRA 3172
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8910.19807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJG4_ECTSI5.150e-883.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K688_9PHAE5.180e-883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8910contigS-firma_M_contig8910:75..1586 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8910.19807.1mRNA_S-firma_M_contig8910.19807.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig8910 75..1709 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig8910.19807.1 ID=prot_S-firma_M_contig8910.19807.1|Name=mRNA_S-firma_M_contig8910.19807.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=88bp
TAAGAPGGAGAGEGASLLDVASVPGLGLGPLVPTTTGELVSCSLLQQARR
ARRRGGAMSHGQGWCSRSGCPTSCATECSRFSCSGGG*
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