prot_S-firma_M_contig889.19775.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig889.19775.1
Unique Nameprot_S-firma_M_contig889.19775.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length321
Homology
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BLAST of mRNA_S-firma_M_contig889.19775.1 vs. uniprot
Match: A0A6H5JYH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYH5_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.030e-39
Identity = 90/171 (52.63%), Postives = 105/171 (61.40%), Query Frame = 0 
Query:    3 ATDVLGVVVLSGVVRSAEIELVCLSVCNACRENRADYCLVVKKENTHFVRPSTLSSTSTQEGEETPSSSGSIGASTSID--GSSRNGVPSPPSVPVKGCSRIAPHRRIQSLALRVDVPLSQVVWPDRLCILKFGWMFDQPLDRPLPGSLLYLDLGNAFNHHIEEVAWPATL 171
            A  VL VVVLSGVV  AE+ELVCLS+CNACRE+  +Y +VV  +N   V PS        EG          GAS+ +   G   N   + P +P +  SR+ PHRRI  LA RVD+PLSQVVWP+ L  LKFGW FD PLD PLP SL+ L LG  FNHHIE V WP  L
Sbjct:    6 AAGVLRVVVLSGVVWPAEVELVCLSICNACRESSTNYSMVVTAKNVRLVSPSRRQ----DEG----------GASSPLPLCGGDINSDSAVPVIPAEN-SRVLPHRRISRLAFRVDLPLSQVVWPEGLRGLKFGWRFDHPLDHPLPDSLIDLHLGGTFNHHIEGVTWPPRL 161
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig889.19775.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYH5_9PHAE2.030e-3952.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 158..200
e-value: 1.6E-5
score: 24.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 127..303
e-value: 5.6E-7
score: 30.3
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 116..230
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 116..230
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..320
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..13
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 143..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig889contigS-firma_M_contig889:25140..26102 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig889.19775.1mRNA_S-firma_M_contig889.19775.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig889 22843..26200 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig889.19775.1 ID=prot_S-firma_M_contig889.19775.1|Name=mRNA_S-firma_M_contig889.19775.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=321bp
MSATDVLGVVVLSGVVRSAEIELVCLSVCNACRENRADYCLVVKKENTHF
VRPSTLSSTSTQEGEETPSSSGSIGASTSIDGSSRNGVPSPPSVPVKGCS
RIAPHRRIQSLALRVDVPLSQVVWPDRLCILKFGWMFDQPLDRPLPGSLL
YLDLGNAFNHHIEEVAWPATLQSLTFGDRFNRQVELAMWPTSLKRLSFGS
SFDQPIAGVRWPASLQELHLGDAFNQPVNNWAGAPGLRKLEFGMAFRCTV
DDVEWPKGLRELTFGACFDQELQAWELPRSLRLLRLPDVYALHDTFELEG
LPGGCKLCIDRTEVFDLLLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP