prot_S-firma_M_contig8654.19511.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig8654.19511.1
Unique Nameprot_S-firma_M_contig8654.19511.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length240
Homology
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BLAST of mRNA_S-firma_M_contig8654.19511.1 vs. uniprot
Match: D7G1G7_ECTSI (Tetratricopeptide repeat family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G7_ECTSI)

HSP 1 Score: 356 bits (913), Expect = 3.000e-119
Identity = 179/240 (74.58%), Postives = 202/240 (84.17%), Query Frame = 0 
Query:    1 GQLARLLRDGGPARYPEAEVAYEVWMKGLQKAAESAEGSSRPQSAEDKKQADRELADCVSEYMDVLEEQGKDLEDLMWELLRVDKRVYGTTSAEVANDSDRFGRYLASKQSFGQAEQLLKKALQMKERSRGKDHPEIAGILRAIGRVLFEVNGLKDAGEAFDRALAIDSKHNQSPADIIEDMRSLGMVYCRQGNYDKAESMYRKVVDMDKRFRNGEDDPSVITEMNVLAVLLYAQGKMDQ 240
            G+LAR LRD GP RY EAE  Y+ W KGL    ++  G  R  S EDKK  D+ELA+CVSEYMD+ E QG+D+EDLMWELL V KRVYG  S EVA+ SDRFGRYL+ KQS+GQAEQLLKKAL MKERS G+DHPEIAGILRAIGRVLFEVN LKDAG+AFD+AL ID++H ++PADIIEDMRSLGMVYCRQG+YDK ESMYRKVVDMDK+ + GE+DPSVITEMNVLAVLLYAQGKMDQ
Sbjct:   32 GRLARFLRDAGPERYTEAEAEYDGWTKGLHAYGKTGGGGGRQLSPEDKKLLDQELAECVSEYMDIREHQGEDVEDLMWELLSVSKRVYGPNSKEVADHSDRFGRYLSKKQSYGQAEQLLKKALVMKERSLGRDHPEIAGILRAIGRVLFEVNALKDAGDAFDKALTIDTRHEETPADIIEDMRSLGMVYCRQGHYDKGESMYRKVVDMDKKLKGGEEDPSVITEMNVLAVLLYAQGKMDQ 271
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BLAST of mRNA_S-firma_M_contig8654.19511.1 vs. uniprot
Match: A0A6H5KWX2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE)

HSP 1 Score: 299 bits (765), Expect = 2.940e-90
Identity = 152/215 (70.70%), Postives = 173/215 (80.47%), Query Frame = 0 
Query:    1 GQLARLLRDGGPARYPEAEVAYEVWMKGLQKAAESAEGSSRPQSAEDKKQADRELADCVSEYMDVLEEQGKDLEDLMWELLRVDKRVYGTTSAEVANDSDRFGRYLASKQSFGQAEQLLKKALQMKERSRGKDHPEIAGILRAIGRVLFEVNGLKDAGEAFDRALAIDSKHNQSPADIIEDMRSLGMVYCRQGNYDKAESMYRKVVDMDKRFRNG 215
            G+LAR LR  GP RY EAE  Y+ WMKGL    +   G  R  S E KK  D+ELA+CVSEYMD+ E QG+D+EDLMWELL V KRVYG  S EVA+ SDRFGRYL+ KQS+ QAEQLLKKAL MKERS G+DHPEIAGILRAIGRVLFEVN LKDAG+AFD+A  IDS+H ++PA+IIEDMRSLGMVYCRQG+YDK ESMYRKVVDMDK+ + G
Sbjct:  807 GRLARFLRAAGPERYAEAEAEYDGWMKGLHAYGKPGGGGERQLSPEGKKLLDQELAECVSEYMDIREHQGEDVEDLMWELLSVSKRVYGPNSKEVADHSDRFGRYLSKKQSYAQAEQLLKKALLMKERSLGRDHPEIAGILRAIGRVLFEVNALKDAGDAFDKAYIIDSRHGETPANIIEDMRSLGMVYCRQGHYDKGESMYRKVVDMDKKLKGG 1021
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig8654.19511.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1G7_ECTSI3.000e-11974.58Tetratricopeptide repeat family n=1 Tax=Ectocarpus... [more]
A0A6H5KWX2_9PHAE2.940e-9070.70NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 179..212
e-value: 0.0056
score: 25.9
coord: 96..129
e-value: 330.0
score: 1.6
coord: 138..171
e-value: 41.0
score: 9.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 179..212
score: 10.207
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 96..129
score: 6.018
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 138..171
score: 8.437
NoneNo IPR availablePFAMPF13424TPR_12coord: 109..168
e-value: 1.3E-8
score: 35.0
coord: 184..239
e-value: 2.5E-9
score: 37.3
NoneNo IPR availablePANTHERPTHR45641FAMILY NOT NAMEDcoord: 54..240
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 43..240
e-value: 6.6E-30
score: 106.1
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 101..240
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 96..212
score: 13.909

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig8654contigS-firma_M_contig8654:188..4066 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig8654.19511.1mRNA_S-firma_M_contig8654.19511.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig8654 188..4066 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig8654.19511.1 ID=prot_S-firma_M_contig8654.19511.1|Name=mRNA_S-firma_M_contig8654.19511.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=240bp
GQLARLLRDGGPARYPEAEVAYEVWMKGLQKAAESAEGSSRPQSAEDKKQ
ADRELADCVSEYMDVLEEQGKDLEDLMWELLRVDKRVYGTTSAEVANDSD
RFGRYLASKQSFGQAEQLLKKALQMKERSRGKDHPEIAGILRAIGRVLFE
VNGLKDAGEAFDRALAIDSKHNQSPADIIEDMRSLGMVYCRQGNYDKAES
MYRKVVDMDKRFRNGEDDPSVITEMNVLAVLLYAQGKMDQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom_sf
IPR019734TPR_repeat