mRNA_S-firma_M_contig9976.20953.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9976.20953.1
Unique NamemRNA_S-firma_M_contig9976.20953.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: D7FR66_ECTSI (ADP/ATP translocase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR66_ECTSI)

HSP 1 Score: 373 bits (957), Expect = 2.070e-122
Identity = 185/200 (92.50%), Postives = 194/200 (97.00%), Query Frame = 1 
Query:    7 SPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMGIS 606
            SPK+DFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCL+KTA+GPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTG+AKNP+KND GI GM SKFAIAQATAITAGYASYPFDTVRRRLQMQSEKP+SEW YQGALDCLKKI+KEEGNSALFKGASANVLRTVGSAMVLVMYDQ KT+M +S
Sbjct:  106 SPKDDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLSKTARGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGSAKNPFKNDTGIKGMTSKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPRSEWHYQGALDCLKKILKEEGNSALFKGASANVLRTVGSAMVLVMYDQFKTLMALS 305
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A0A6H5JHM3_9PHAE (ADP/ATP translocase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM3_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 2.450e-103
Identity = 156/201 (77.61%), Postives = 176/201 (87.56%), Query Frame = 1 
Query:    1 QASPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMGI 603
            +A+PK +F KFF IN+ASGGLAGAGSLCFVYPLD+ARTRLASDVGSGKRDF+GLWDCL++TAKGPKGV GLYNGFGVSVMGIIPYRGVYFGLYDT   KNP+KNDKG  G+ SKF IAQ  AI +GYASYPFDT+RRRLQMQSEKP ++W Y G  DC  KI+KEEG +ALFKGA AN LRTVGSA+VLVMYDQMKT++ +
Sbjct:  104 KANPKTEFGKFFVINMASGGLAGAGSLCFVYPLDYARTRLASDVGSGKRDFSGLWDCLSRTAKGPKGVAGLYNGFGVSVMGIIPYRGVYFGLYDTFREKNPFKNDKGAKGLLSKFCIAQTVAIASGYASYPFDTIRRRLQMQSEKPPAQWLYNGTTDCFAKIIKEEGGAALFKGAGANALRTVGSALVLVMYDQMKTVLNL 304
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A8E615_XENLA (ADP/ATP translocase n=1 Tax=Xenopus laevis TaxID=8355 RepID=A8E615_XENLA)

HSP 1 Score: 311 bits (798), Expect = 1.560e-98
Identity = 151/199 (75.88%), Postives = 172/199 (86.43%), Query Frame = 1 
Query:    7 SPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMGI 603
            +PKE+F KFF +N+ASGGLAGAGSLC VYPLD+ARTRLASDVGSG RDF GL DCL KTA+GPKG+LGLYNGFGVSV GIIPYRGVYFG+YD+   KNP+K D GI G+ASKFA+AQ TAI AGYASYPFDT+RRRLQMQSEKPK +W Y+G +DC  KIMK EG +A+FKGA AN LRTVGSAMVLV+YDQ+K IM +
Sbjct:  107 NPKEEFGKFFLVNMASGGLAGAGSLCIVYPLDYARTRLASDVGSGARDFNGLGDCLVKTARGPKGILGLYNGFGVSVAGIIPYRGVYFGMYDSLREKNPYKKDTGIIGLASKFAVAQFTAICAGYASYPFDTIRRRLQMQSEKPKEQWLYKGTVDCFGKIMKNEGVTAMFKGAGANALRTVGSAMVLVLYDQLKAIMNL 305
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: F2DZ59_HORVV (ADP/ATP translocase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DZ59_HORVV)

HSP 1 Score: 311 bits (797), Expect = 5.940e-98
Identity = 151/199 (75.88%), Postives = 175/199 (87.94%), Query Frame = 1 
Query:   10 PKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMGIS 606
            PK++F  FF + +ASGGLAGAGSLC VYPLD+ARTRLASDVG+GKRDF GL DCL KTA+GP+GVLGLYNGFGVSV GIIPYRGVYFGLYD+   KNP+KND G+ GMASKFA+AQ TAI AGYASYPFDTVRRRLQMQSEKPK +W Y+ ++DCL K++KEEG SALFKGA AN LRTVGSA+VLV+YDQ++ I+GI+
Sbjct:  131 PKKEFGMFFLVQMASGGLAGAGSLCIVYPLDYARTRLASDVGTGKRDFKGLGDCLVKTARGPRGVLGLYNGFGVSVAGIIPYRGVYFGLYDSLREKNPYKNDFGVMGMASKFAVAQTTAIAAGYASYPFDTVRRRLQMQSEKPKEQWVYKSSMDCLTKVIKEEGMSALFKGAGANALRTVGSALVLVLYDQLQGILGIN 329
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A0A482RRH8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRH8_9ARCH)

HSP 1 Score: 304 bits (778), Expect = 2.060e-95
Identity = 150/198 (75.76%), Postives = 168/198 (84.85%), Query Frame = 1 
Query:    7 SPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMG 600
            SPK DF  FF  N+ASGGLAGAGSLC VYPLD+ARTRLASDVGSG+R F GL DCL KTAKGP G++GLYNGFGVSV GIIPYRGVYFG++D       ++N+ GI G+ASKFAIAQATAITAGYASYPFDT+RRRLQMQSEKPK+EW Y G +DCL KIMKEEG SALFKGA AN LRTVGSAMVLV+Y ++K +MG
Sbjct:  109 SPKTDFGMFFLTNMASGGLAGAGSLCIVYPLDYARTRLASDVGSGQRTFNGLADCLVKTAKGPSGIMGLYNGFGVSVAGIIPYRGVYFGMFDXXXXXXXFRNEPGIVGLASKFAIAQATAITAGYASYPFDTIRRRLQMQSEKPKAEWIYSGTMDCLTKIMKEEGTSALFKGAGANALRTVGSAMVLVLYGEIKAMMG 306
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: F2E4J1_HORVV (ADP/ATP translocase n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2E4J1_HORVV)

HSP 1 Score: 304 bits (778), Expect = 2.060e-95
Identity = 148/198 (74.75%), Postives = 168/198 (84.85%), Query Frame = 1 
Query:    7 SPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMG 600
            SPK++F  FF  N+ASGGLAGAGSLC VYPLD+ARTRLASDVG G + F GL DCL KTA+GP G+LGLYNGFGVSV GIIPYRGVYFG+YD     NP+KN+KGI G+ASKFAIAQATAITAGYASYPFDT+RRRLQMQSEKPK EW Y+G  DC  KI+K EG SALFKGA AN LRTVGSA+VLV+Y ++KT++G
Sbjct:  109 SPKKEFGMFFLTNMASGGLAGAGSLCIVYPLDYARTRLASDVGKGHKSFNGLADCLIKTARGPSGILGLYNGFGVSVAGIIPYRGVYFGMYDXXXXXNPFKNEKGIIGLASKFAIAQATAITAGYASYPFDTIRRRLQMQSEKPKEEWLYKGTADCFNKIVKNEGTSALFKGAGANALRTVGSALVLVLYGEIKTMLG 306
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A0A836CBW4_9STRA (ADP/ATP translocase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBW4_9STRA)

HSP 1 Score: 303 bits (776), Expect = 3.140e-95
Identity = 149/199 (74.87%), Postives = 167/199 (83.92%), Query Frame = 1 
Query:    7 SPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMGI 603
            +PK +F KFF IN+ASGGLAGAGSL  VYPLD+ARTRLASDVG+GKRDF GL DCL KTA GPKG+LGLYNGFGVSV GIIPYRGVYFGLYD+   KNP+K+DKG+ G+ SKF IAQ  AI AGYASYPFDTVRRRLQMQSEKPK++W Y   +DC KKI K+EG  A FKGA AN LRTVGSA+VLVMYDQ KTI+ +
Sbjct:  108 NPKTEFGKFFLINMASGGLAGAGSLAIVYPLDYARTRLASDVGTGKRDFNGLADCLKKTASGPKGILGLYNGFGVSVTGIIPYRGVYFGLYDSAREKNPFKDDKGLMGVLSKFGIAQFVAIAAGYASYPFDTVRRRLQMQSEKPKADWIYANTMDCFKKIAKDEGTGAFFKGAGANALRTVGSALVLVMYDQFKTILNM 306
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A0A6A5B5S1_NAEFO (ADP/ATP translocase n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5B5S1_NAEFO)

HSP 1 Score: 301 bits (770), Expect = 3.320e-94
Identity = 147/200 (73.50%), Postives = 170/200 (85.00%), Query Frame = 1 
Query:    7 SPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMKTIMGIS 606
            SPKE+F KFF + +ASGGLAGAGSLC VYPLD+ARTRLASDVG   RDF GL DCL KTA+GP+GVLGLYNGFGVSV GIIPYRGVYFGLYD+   KNP+KND G+ G+ SKF +AQ TAI AGYASYPFDTVRRRLQMQSEKPK +W Y+G  DC  KI+KEEG +A+FKGA AN LRTVGSA+VLV+YDQM+ ++G++
Sbjct:  111 SPKEEFGKFFLVQMASGGLAGAGSLCIVYPLDYARTRLASDVGKN-RDFKGLGDCLVKTARGPRGVLGLYNGFGVSVAGIIPYRGVYFGLYDSLREKNPYKNDLGVLGVVSKFVVAQTTAIAAGYASYPFDTVRRRLQMQSEKPKEQWIYKGTADCFTKILKEEGMNAMFKGAGANALRTVGSALVLVLYDQMQGLLGVN 309
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A0A061QXY6_9CHLO (ADP/ATP translocase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QXY6_9CHLO)

HSP 1 Score: 298 bits (763), Expect = 4.630e-93
Identity = 146/196 (74.49%), Postives = 165/196 (84.18%), Query Frame = 1 
Query:    1 QASPKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMK 588
            +A PKE+F KFFAIN+ASGGLAGAGSLC VYPLD+ARTRLASDVG+GK  F GL DCL KTA+GP G+ GLYNGFGVSV+GIIPYRGVYFG+YD+   KNP+K D G  G+ SKFA+AQ TAITAGYASYPFDTVRRRLQMQSEKP+SEW Y G  DC  K+ K EG  ALFKGA AN LRTVGSA+VLV+YDQ++
Sbjct:  109 KADPKEEFVKFFAINMASGGLAGAGSLCLVYPLDYARTRLASDVGAGKSTFNGLGDCLVKTARGPGGIRGLYNGFGVSVVGIIPYRGVYFGMYDSLREKNPYKKDLGPLGVISKFAVAQVTAITAGYASYPFDTVRRRLQMQSEKPRSEWMYSGTADCFAKVAKNEGIGALFKGAGANALRTVGSALVLVLYDQLQ 304
[Close]
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Match: A0A7S0LHV2_9EUKA (ADP/ATP translocase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHV2_9EUKA)

HSP 1 Score: 295 bits (754), Expect = 1.200e-91
Identity = 146/193 (75.65%), Postives = 166/193 (86.01%), Query Frame = 1 
Query:   10 PKEDFAKFFAINIASGGLAGAGSLCFVYPLDFARTRLASDVGSGKRDFTGLWDCLTKTAKGPKGVLGLYNGFGVSVMGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYASYPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANVLRTVGSAMVLVMYDQMK 588
            PK++F  FF  N+ASGGLAGAGSL  VYPLD+ARTRLASDVG  ++ F GL DCL KTAKGP GV+GLYNGFGVSVMGIIPYRGVYFG+YD+ A  NP+K DK I G+ASKFAIAQATAITAGYASYPFDT+RRRLQMQSEKPK+EW Y+G  DCL KIMK+EG +ALFKGA AN LRTVGSA+VLV+Y ++K
Sbjct:  131 PKKEFGMFFLANMASGGLAGAGSLTIVYPLDYARTRLASDVGGKQKSFNGLADCLVKTAKGPSGVMGLYNGFGVSVMGIIPYRGVYFGMYDSLAGINPYKKDKTILGLASKFAIAQATAITAGYASYPFDTIRRRLQMQSEKPKAEWIYKGTADCLAKIMKDEGTAALFKGAGANALRTVGSAIVLVLYGEIK 323
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9976.20953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR66_ECTSI2.070e-12292.50ADP/ATP translocase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A6H5JHM3_9PHAE2.450e-10377.61ADP/ATP translocase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A8E615_XENLA1.560e-9875.88ADP/ATP translocase n=1 Tax=Xenopus laevis TaxID=8... [more]
F2DZ59_HORVV5.940e-9875.88ADP/ATP translocase n=1 Tax=Hordeum vulgare subsp.... [more]
A0A482RRH8_9ARCH2.060e-9575.76Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F2E4J1_HORVV2.060e-9574.75ADP/ATP translocase n=1 Tax=Hordeum vulgare subsp.... [more]
A0A836CBW4_9STRA3.140e-9574.87ADP/ATP translocase n=1 Tax=Tribonema minus TaxID=... [more]
A0A6A5B5S1_NAEFO3.320e-9473.50ADP/ATP translocase n=1 Tax=Naegleria fowleri TaxI... [more]
A0A061QXY6_9CHLO4.630e-9374.49ADP/ATP translocase n=1 Tax=Tetraselmis sp. GSL018... [more]
A0A7S0LHV2_9EUKA1.200e-9175.65ADP/ATP translocase n=1 Tax=Coccolithus braarudii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9976contigS-firma_M_contig9976:152..3271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score222.6
Seed ortholog evalue1e-55
Seed eggNOG ortholog2880.D7FR66
KEGG koko:K05863
KEGG TC2.A.29.1
KEGG Pathwayko04020,ko04022,ko04217,ko04218,ko05012,ko05016,ko05166,map04020,map04022,map04217,map04218,map05012,map05016,map05166
GOsGO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005347,GO:0005471,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006820,GO:0006839,GO:0006855,GO:0006862,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0015075,GO:0015215,GO:0015216,GO:0015217,GO:0015238,GO:0015291,GO:0015297,GO:0015301,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015866,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0046902,GO:0050896,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0061024,GO:0065007,GO:0065008,GO:0071702,GO:0071705,GO:0071840,GO:0090559,GO:0098573,GO:0098656,GO:0099516,GO:1901264,GO:1901505,GO:1901679
EggNOG free text desc.ATP:ADP antiporter activity
EggNOG OGsKOG0749@1,KOG0749@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03029
Hectar predicted targeting categoryother localisation
Exons4
Model size1817
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9976.20953.1prot_S-firma_M_contig9976.20953.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9976 785..2063 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828837.9658244-UTR-S-firma_M_contig9976:151..2611622828837.9658244-UTR-S-firma_M_contig9976:151..261Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9976 152..261 +
1697105193.5391326-UTR-S-firma_M_contig9976:151..2611697105193.5391326-UTR-S-firma_M_contig9976:151..261Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9976 152..261 +
1622828837.9800274-UTR-S-firma_M_contig9976:657..7841622828837.9800274-UTR-S-firma_M_contig9976:657..784Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9976 658..784 +
1697105193.5519888-UTR-S-firma_M_contig9976:657..7841697105193.5519888-UTR-S-firma_M_contig9976:657..784Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9976 658..784 +
1622828838.0422242-UTR-S-firma_M_contig9976:2063..32711622828838.0422242-UTR-S-firma_M_contig9976:2063..3271Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9976 2064..3271 +
1697105193.5935307-UTR-S-firma_M_contig9976:2063..32711697105193.5935307-UTR-S-firma_M_contig9976:2063..3271Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9976 2064..3271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828837.9956546-CDS-S-firma_M_contig9976:784..7981622828837.9956546-CDS-S-firma_M_contig9976:784..798Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9976 785..798 +
1697105193.562211-CDS-S-firma_M_contig9976:784..7981697105193.562211-CDS-S-firma_M_contig9976:784..798Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9976 785..798 +
1622828838.0115042-CDS-S-firma_M_contig9976:1211..14591622828838.0115042-CDS-S-firma_M_contig9976:1211..1459Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9976 1212..1459 +
1697105193.5722597-CDS-S-firma_M_contig9976:1211..14591697105193.5722597-CDS-S-firma_M_contig9976:1211..1459Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9976 1212..1459 +
1622828838.0267956-CDS-S-firma_M_contig9976:1953..20631622828838.0267956-CDS-S-firma_M_contig9976:1953..2063Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9976 1954..2063 +
1697105193.5829742-CDS-S-firma_M_contig9976:1953..20631697105193.5829742-CDS-S-firma_M_contig9976:1953..2063Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9976 1954..2063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9976.20953.1

>prot_S-firma_M_contig9976.20953.1 ID=prot_S-firma_M_contig9976.20953.1|Name=mRNA_S-firma_M_contig9976.20953.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=124bp
MGIIPYRGVYFGLYDTGAAKNPWKNDKGIAGMASKFAIAQATAITAGYAS
YPFDTVRRRLQMQSEKPKSEWQYQGALDCLKKIMKEEGNSALFKGASANV
LRTVGSAMVLVMYDQMKTIMGIS*
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mRNA from alignment at S-firma_M_contig9976:152..3271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9976.20953.1 ID=mRNA_S-firma_M_contig9976.20953.1|Name=mRNA_S-firma_M_contig9976.20953.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3120bp|location=Sequence derived from alignment at S-firma_M_contig9976:152..3271+ (Sphaerotrichia firma Sfir_13m male)
CAGGCCAGCCCCAAGGAGGACTTCGCCAAGTTCTTCGCCATCAACATCGC
CTCCGGCGGTCTCGCCGGCGCCGGTAGCTTGTGCTTCGTCTACCCTCTCG
ACTTCGCCCGGTAAGTTCGAAGTCTGGCGAGAGCCTTCCTCGAATCGTGT
TCTTCGGGTGCCCGGTACCGTTTTGTGAGGCACCTGCGCTCAAACGTTGT
TGCGCCCCCTCCGGTCGTGAAATCGGTGACGGTTGTGATCACGTCACTAT
CAAGACGACCTTTCCACAGCAGTGCGAGGGGTATCGGCAGGAGTGGAGAA
ATATTGATTGACTGCTTGTTGTCCGAAGGTGTCGAGCTTCCTGTCCTCCC
GCCCACTGAAATCAATAGGTTTGCACTTGCACATGATTGGGGCATATATC
ATTCTCGTGATCGCAGCTGTTGGCCCCCCCCTCTTACATCCCATTCCCGA
CCCCGTCCCCCTCCTTTTCCACCTCGTTTGATTCGTCCAATCGAACGGAA
TCGCAGTACTCGCCTCGCCTCCGATGTTGGATCCGGCAAGCGCGACTTCA
CCGGGCTGTGGGACTGCCTCACCAAGACCGCCAAGGGCCCCAAGGGCGTC
CTCGGCCTCTACAACGGCTTCGGCGTGTCCGTGATGGGCATCATCCCGTG
AGTACACAAGTCGTAGGCGTGGGACATGCTCTCCCCGAGGTTGCGCGAAA
GCAGCGGTAGGTTAATGTGCGGCTCATGCGTAAACATGTGTCGCCCAACA
ATTGAAGGTTCGCGAAGCCGATTGTGTGCAAAAAGGGGGGAGCCAATCAG
TCCTCCTCGTCGGTACAGTAAAAGCTCCAGCAGGACAGAGGGGACCCCCC
CCGGACCCCCCCCCTCCCGTATGCCTCACTTTTTAACAAGTCCAACCGGA
CCGCAAGGCCACGGGAGCGTAGTGCCGAGTGGTTTGTTGTCGGGAGGGGT
CTTCACACCTCCTGCCAAACGGCCGTCCTCCGTAGACCCTCCCTCTCTCC
CTCCCCTCCCAAAACCCTAAAGATCTCAACTTTTGTGCCTTGGTCGTGTC
GCCTCCTCAGGTACCGCGGTGTGTACTTCGGCCTGTACGACACCGGCGCA
GCCAAGAACCCGTGGAAGAACGACAAGGGTATCGCGGGCATGGCCTCCAA
GTTCGCCATCGCCCAGGCCACGGCGATCACGGCGGGTTACGCCTCGTACC
CGTTCGACACCGTGCGCCGCCGGCTGCAGATGCAGTCCGAGAAGCCCAAG
TCGGAGTGGCAGTACCAGGGAGCGTTGGACTGCCTCAAGAAGATCATGAA
GGAGGAGGGTGAGTTATTTGGCTGGCTTGGAGTCTCGTCGGGTTGTGAGC
CGGTGGGATGGTTATGTTGTTCTTTCACGGGGTAGTACGGAGCATGTCGT
TGCGGAGGGCAAAGCTTGCACAGCTCGTGCGGGTTCGCCGGCCGTCGCCT
ATGACCGCTGTCGGAAACTGGCTCTGTCAAAGCGACCGAGCCGCAGCTGT
CTACCATAGCAGAGGTCTCCCTGTGAACAGTACATTGTGATGAGTACAAG
CCTCGCTCTGCCTGCCCTATTTTACATGTACAGCTTTTGTGTTTTTCGCG
GAAGGAAGGTCTCTTTGCGCTTTATGTTAACCCGCGTTGCCATTCTTGTG
AGAATGCTGTGTTCCTTGTGCCGAGGGAGAGGGGTCGCTGTTGACTTGTC
TTGCTCGTTCCCATTTCTCACGTTTTCTACCCGCTGATCCTGCTCTCTTT
CTCTCCCCTCCATGTCCCGTCCTCGCTCGCGTATTTTCCCAAAAATTACC
AGGTAACTCGGCCCTGTTCAAGGGCGCCAGCGCCAACGTGCTCCGCACCG
TCGGATCGGCCATGGTGCTTGTCATGTACGACCAGATGAAGACCATCATG
GGTATCTCCTAAGCCGTTTAATCTGTCTTGTCTTGTCTTGTCCTGCCTTC
TTCTGCCTGTGGTGCCGCCGCCGCCGCGCCGCTGCCGGCAGTCGTAGTTT
CATCATCTTGAGCGCGTACGCGCGCGTGCCGTTAAAAGACTCGAGGGGAA
GGGCGTGATGTGATGTGATTTTTGTGGCGTCCGCATGGATGGACGGTTTC
AAAGCGTGTTTTTTTTTTCTTTGTTAATCTATCTCTTTGTTGTGGTGCGT
ACCGCCATATGTACCACATGGCTGCAGAGCAGTTGGAAGACCGCGCTGCT
TTTGCGGTGCCCGATTTTGTCGCACCCACGGGTCAGGTCGGGCGGGGAGG
TGGGTGGTACGTGTACACTAGTATCTCGTCGCGCGCCGTGGGGTCTGCTG
TTCTGTTGGAGCTGCTCGCGGGTGCAGTGCATGCCGGCGGTGGCAGGATT
CAGGAGTTGTGGAAGCGACAGCAATAGTCGCATCAAATCAAAAGAGACGA
GGGAGGGGGGGGAGGGAAAGTGGGAGTTTGAAGGGAGGGGGCTGAGAAGA
ATTCAAGATCGAGGATTTCTGCAAATCTTTTGGGGGTTTTATTAAACGGG
GCTGCGAGGTGCTGGCGCAAGAAAAATGGCGTCGCTTTTGTGGCCCCCCC
ACCCTCTTTCTTTACGTGTATCCGATCTTGAGTATCTCAGTCCCCTCTTT
CATGTCTGGCGTTCTTGTGCCAGACAGGGAGAGGAGTTTTGCTGCAGGTG
TTGGACGATGGTCGGCGTTGTGCGAGCAGGGGGGAGTGGGGCGGACGCAC
GCATTGGTATGGCATGGCACGGGGGCGAAAGAAACACACACACTGGTAGG
CGGGAGGAGAGAGTCGCGAAGTGCTCGCCTTGTCTCTTCGTTGAACTGCA
GTTTTGGTGCTGGAAAATTTTGAGTGTTTTTTTGGTACAAGTGCTTTCTC
GGGTCTTGACCTCCTTGTCTGTTTGCCCTCTTTTTCTCTGATGGTCATTC
GTCGAATTCTCAACAAAATTCCAAGGAAATGAGGTTTTAACTTTTGCACT
CGTCAGGCTGGATTCGCTGAGCGATGAACCCAACCCACACCAGCAACCTT
GACCTCGGCACAGAGGACGTGTGATGTGGCACGGCAACGTCGATACGGAC
GATCGGGGATTTTTCACCCGGTGCATACCACATACCCAGCCGCGAACACC
TCTCCAACATGGTGATGCCC
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Coding sequence (CDS) from alignment at S-firma_M_contig9976:152..3271+

>mRNA_S-firma_M_contig9976.20953.1 ID=mRNA_S-firma_M_contig9976.20953.1|Name=mRNA_S-firma_M_contig9976.20953.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=744bp|location=Sequence derived from alignment at S-firma_M_contig9976:152..3271+ (Sphaerotrichia firma Sfir_13m male)
ATGGGCATCATCCCATGGGCATCATCCCGTACCGCGGTGTGTACTTCGGC
CTGTACGACACCGGCGCAGCCAAGAACCCGTGGAAGAACGACAAGGGTAT
CGCGGGCATGGCCTCCAAGTTCGCCATCGCCCAGGCCACGGCGATCACGG
CGGGTTACGCCTCGTACCCGTTCGACACCGTGCGCCGCCGGCTGCAGATG
CAGTCCGAGAAGCCCAAGTCGGAGTGGCAGTACCAGGGAGCGTTGGACTG
CCTCAAGAAGATCATGAAGGAGGAGGGTACCGCGGTGTGTACTTCGGCCT
GTACGACACCGGCGCAGCCAAGAACCCGTGGAAGAACGACAAGGGTATCG
CGGGCATGGCCTCCAAGTTCGCCATCGCCCAGGCCACGGCGATCACGGCG
GGTTACGCCTCGTACCCGTTCGACACCGTGCGCCGCCGGCTGCAGATGCA
GTCCGAGAAGCCCAAGTCGGAGTGGCAGTACCAGGGAGCGTTGGACTGCC
TCAAGAAGATCATGAAGGAGGAGGGTAACTCGGCCCTGTTCAAGGGCGCC
AGCGCCAACGTGCTCCGCACCGTCGGATCGGCCATGGTGCTTGTCATGTA
CGACCAGATGAAGACCATCATGGGTATCTCCTAAGTAACTCGGCCCTGTT
CAAGGGCGCCAGCGCCAACGTGCTCCGCACCGTCGGATCGGCCATGGTGC
TTGTCATGTACGACCAGATGAAGACCATCATGGGTATCTCCTAA
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