mRNA_S-firma_M_contig983.20820.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig983.20820.1
Unique NamemRNA_S-firma_M_contig983.20820.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 652 bits (1683), Expect = 2.180e-225
Identity = 303/452 (67.04%), Postives = 355/452 (78.54%), Query Frame = 1 
Query:  442 VACGLIGSTTLVQGKIDITCDPMKDNQIDWDCVFGPDSLAEVNSKGGYMTSCS-KRDYACSRFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTARDTDSAGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCADLCDDSKYFGLQYGNECWCGSSKDKPNRHGTSKKCTMTCAGRDRIKYCGGYFAMDVYEHEGKPEGIPTGATYLGCFADDTQDRALTLKSKSTSTMDYASCKTYCEGAKDTKYFGVQYGKECFCGKSENDYNEHGPAICNMKCSGDDGLTCGGFGAMNVFKV 1794
            + C L G+ TLV G IDITCD  KDN IDWDCVFGP SL EVN KGGYMT CS KR Y CS FVVKK+EERSETKVNEGPEGFD+ KGEKY  KYSF+ +EGM+VS KYTH GQLKGTIGKGKVKG MIK DPI+ LTAN DGLMVRFSNR+   NFHEGL KHLNW D+TG WVHVKIVTTFGE M V LSGAVEG+AVWP +LKPVAWH DADRVRMKLGLYHKIDQV+DG VEYRDISI+GPNG+I T+ + D  GHLY+GC+ DD  +   SGKKYVDAHMT +MCADLCD ++YFG Q G ECWC +SKD+P +HG SK C   C G  RIK CGG  ++ V++ EG+PE +P G+ Y+GCFADD  +RALTLK   +S MDY  C+++C+ A + +YFG+Q G +CFCGK E+DY+EHGPA+C+ +C+GD    CG   A  VF++
Sbjct:    4 LVCSLAGTRTLVHGAIDITCDAEKDNHIDWDCVFGPGSLDEVNKKGGYMTKCSGKRHYPCSLFVVKKDEERSETKVNEGPEGFDYYKGEKYIIKYSFRAEEGMRVSSKYTHLGQLKGTIGKGKVKGTMIKLDPIYCLTANKDGLMVRFSNREMPDNFHEGLSKHLNWKDSTGQWVHVKIVTTFGEFMVVRLSGAVEGRAVWPSNLKPVAWHRDADRVRMKLGLYHKIDQVYDGKVEYRDISIEGPNGIIRTSPEPDHEGHLYVGCFADDDDDHVFSGKKYVDAHMTNEMCADLCDGTRYFGTQDGTECWCSASKDRPRKHGKSKSCNKACPGTSRIKTCGGRSSLSVFKFEGEPEDVPRGSKYMGCFADDIYNRALTLKETKSSKMDYDMCESFCDAA-NARYFGLQSGTKCFCGKREDDYDEHGPALCSTECAGDSKSVCGDSLAQTVFRI 454
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 6.360e-112
Identity = 195/408 (47.79%), Postives = 265/408 (64.95%), Query Frame = 1 
Query:  484 KIDITCDPMKDNQIDWDCVFGPDSLAEVNSKGGYMTSCSK--RDYACSRFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTA-----RDTDSAGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCADLCDDSKYFGLQYGNECWCGSSKDKPN----RHGTSKKCTMTCAGRDRIKYCGGYFAMDVYEH-EGKPEGIPTGATYLGCFADDTQDRALTLKSKSTSTMDYASCKTYCEGAKDTKYFGVQYGKE 1671
            + DITC  +  N IDW+CVFG  SL EV ++GG +TSCS   +   CSRF+V +++ER+E  V +G  GF F KGE Y FKYSFK ++GMKVS   +  GQ+KG  G     G  + G+P+FS+TAN DG+ VRF+N +S  +  EG+++ L+W D TG WV+V+I TTFG+SMEV  SGAVEGKAVWP   KPVAW++DAD +  KLGLYH  ++V D  VEY++ISIQGP G I T+           G +YLGC  D R +R L    Y  + +TT+MCA  C+   +FG+QYG+ECWCGS+ +K +    RHG S  C   CAG D  + CGGY+A+ +YE+       IP G+ YLGC++D   +RAL+LK  +++ M +  C  +C    + KYF VQ+G+E
Sbjct:  145 QTDITCTALSGNTIDWECVFGYGSLVEVEARGGTLTSCSAGTKVEPCSRFIVPEDKERAEVLVQQGVGGFQFAKGETYIFKYSFKAKDGMKVSGSSSRLGQMKGVSG-----GFQLLGNPLFSVTANNDGINVRFNNDES--DIVEGMDEFLSWEDATGEWVNVEIQTTFGKSMEVHFSGAVEGKAVWPSSYKPVAWNNDADTMMFKLGLYHIRNKVADAEVEYKNISIQGPAGTIRTSALGVKNHGSPEGVMYLGCVKDSRDDRLLDSV-YRSSDLTTEMCATYCEGDDFFGMQYGSECWCGSTDEKDDEDLFRHG-STTCEYPCAG-DEEQTCGGYWAISLYEYGSALATDIPEGSRYLGCYSDHRFERALSLKLTTSNDMTHEWCMDFCSEF-NAKYFAVQWGRE 541
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: D8LDJ9_ECTSI (Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ9_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 8.770e-110
Identity = 188/373 (50.40%), Postives = 237/373 (63.54%), Query Frame = 1 
Query:  478 QGKIDITCDPMKDNQIDWDCVFGPDSLAEV-------NSKGGYMTSCSKRDYACSRFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDST-KNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTA---------RDTDSAGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCADLCDDSKYFGLQYGNE---------------------CWCGSSKDKPNRHGTSKKCTMTCAGRDRIKYCGGYFAMDVY 1482
            + KIDITC P KDN IDWDC+FG DS  EV         +    TSC+ +D  CSRF+V K  +R+ETKV  GPEGF F KGE+Y +KYSF+  EGMK+ K++TH GQ+KG    G+     + GDPI S++AN DGL VRFSN D T  +++     + NW D TG WVHV I T FGESMEV  +G V GK VWPK   PVAW++     RMKLGLYHK +QV DG VE RD+SI+GPNG+I T+         ++ DS GHLYLGC+ +D K++ + GKKYVDAHMTT +CADLC+DSKYFG+QYGNE                     C+CG+ K+  ++HG +  C M C G D    CGG  A +V+
Sbjct:   42 EAKIDITCKPKKDNVIDWDCIFGEDSEEEVLKYRSKDKKERATHTSCTDKDRPCSRFIVPKNVQRAETKVAYGPEGFPFLKGERYIYKYSFRAVEGMKLGKRFTHIGQIKGAYNGGQT----VDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWKDATGEWVHVTIDTVFGESMEVKFAGGVSGKFVWPKDKTPVAWNNKGKMARMKLGLYHKEEQVGDGEVEIRDVSIEGPNGIIRTSPEESPSPSSKENDSKGHLYLGCF-EDEKDKRIFGKKYVDAHMTTAICADLCEDSKYFGMQYGNEACKKICDKEXXXXXXXXXXXECFCGARKEDYDKHGPAI-CHMKCPG-DSDLVCGGGRAQNVF 407
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 9.500e-107
Identity = 188/387 (48.58%), Postives = 245/387 (63.31%), Query Frame = 1 
Query:  484 KIDITCDPMKDNQIDWDCVFGPDSLAEVNSKGGYMTSCSKRDYA--CSRFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTARDTDS-----AGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCADLCDDSKYFGLQYGNECWCGSSKDKPN----RHGTSKKCTMTCAGRDRIKYCGGYFAMDVYEH-EGKPEGIPTGATYLGCFADDTQDRALTLKSKSTSTMDYAS 1608
            K   TC P   + IDW+C+FG  SL EV ++GG + SCS    A  CSRF+V KE+ER+E    +G  GF F KGE Y FKYSF+ ++GMKVS   T  GQ+KG  G     G  +KG+P+FS+TAN +G+ VRF+N +S K   EG++  L+W D TG WVHV+I TTFG+SMEV  SGAVEGKAVWP   KPVAW+DDAD +  KLGLYH  ++V DG VEY++ISIQGPNG++ T+   DS      G + LGC  D   +R L    Y    +T + C+  C+   +FG+QYG+ECWCG+   +      RHG S  C M C+G D+ K CGG +AM +Y+H    P  IP G  YLGCF D+  +RAL+ K  S++ M   S
Sbjct:   47 KSGTTCPPSSGSTIDWNCMFGAGSLVEVQARGGTLVSCSSGTDAEPCSRFIVPKEQERAEVLAQKGVGGFQFAKGEAYIFKYSFRAKDGMKVSGSSTRIGQMKGVSG-----GFQLKGNPLFSVTANNNGINVRFNNEESDK--VEGMDDTLSWEDATGEWVHVEIRTTFGKSMEVYFSGAVEGKAVWPSSYKPVAWNDDADTIMFKLGLYHIKNKVADGEVEYKNISIQGPNGLLRTSSVGDSDHGPPQGIMSLGCVKDADHDRLLDNI-YRFEDLTPEKCSKYCESEPFFGMQYGSECWCGTGAGEDVEDMFRHG-SATCNMACSG-DKDKTCGGSWAMSLYQHGSASPGDIPEGTRYLGCFKDNRFNRALSSKQTSSNDMTLES 423
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 2.470e-82
Identity = 181/443 (40.86%), Postives = 234/443 (52.82%), Query Frame = 1 
Query:  445 ACGLIGSTTLVQGKIDITCDPMKDNQIDWDCVFGPDSLAEVNSKGGYMTSCSKRDYA--CSRFVVKKEEERSETKVNEGPEGFDFNKG-----------------------------------------------EKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTARDTD-----SAGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCADLCDDSKYFGLQYGNECWCGSSKDKPN----RHGTSKKCTMTCAGRDRIKYCGGYFAMDVYEH-EGKPEGIPTGATYLGCFADDTQDRALTLKSKSTSTM 1596
            +C   GS + V G    TC P   + IDW+C+FG  SLAEV ++GG + SC     A  CSRF+V KE+ER+E    +G  GF F KG                                               E Y FKYSF+ ++GMKVS   T  GQ+KG  G     G  +KG+P+FS+TAN +G+ VRF+N D      EG+++ L+W D TG WVHV+I TTFG+SMEV  SGAV+GKAVWP   KPVAW DDAD +  KLGLYH  ++V DG VEY++ISIQGPNG++ T+   D       G   LGC  D R +R L                    D+ Y       ECWCG+   +      RHG S  C M C+G D+ K CGG +AM +Y+H    P  IP G  YLGCF D+  +RAL+ K  S++ +
Sbjct:  212 SCSTFGSCS-VSGT---TCPPSSGSTIDWNCMFGVGSLAEVEARGGKLVSCPSGTDAEPCSRFIVPKEKERAEVLAQKGVGGFQFAKGRNGWPSVMGLVPKNVPSSRGRVVNGLTAKACITKRVRPPGFLPHPKGETYIFKYSFRAKDGMKVSGSSTRLGQMKGVSG-----GFQLKGNPLFSVTANNNGINVRFNNEDDDN--VEGMDEFLSWEDATGEWVHVEIQTTFGKSMEVYFSGAVKGKAVWPSSYKPVAWSDDADTIMFKLGLYHIKNKVADGEVEYKNISIQGPNGLLRTSSVGDINHGPPQGITSLGCAKDARHDRLL--------------------DNIYRFEDLTPECWCGTGAGEDVEDMFRHG-SATCNMACSG-DKDKTCGGPWAMSLYQHGSASPVDIPEGTRYLGCFKDNRFNRALSKKQTSSNDL 621
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.110e-79
Identity = 148/266 (55.64%), Postives = 186/266 (69.92%), Query Frame = 1 
Query:  469 TLVQGK---IDITCDPMKDNQIDWDCVFGPDSLAEVNSKGGYMTSC--SKRDYACS---------------RFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTARDTD 1206
            +L+QG    I+I CD ++D QIDWDCVFGP+SL EV  +GG  T+C  + + + CS               RF+V K+EERSE KV EGPEGF F  GE+Y FKYSF+  E M+V+ ++TH GQLKG+ G     G MIKGDPI+SLTAN  GL VRFSN +S +++H+GL+  L+W   TG WVHV+I+TTFG+SMEV +SGAV G AVWP  LKPVAWH D++ VRMKLGLYH I  V D  V Y+DISI+GPNG+I T+   D
Sbjct:  123 SLLQGNCKPINIVCDALQDYQIDWDCVFGPESLEEVFQRGGDFTTCPGATKAHPCSSLLPILSDPLSTMNVRFIVDKDEERSEVKVQEGPEGFPFLYGEEYIFKYSFQAIEDMQVATRFTHLGQLKGSAG-----GYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVNISGAVSGTAVWPSDLKPVAWHRDSEMVRMKLGLYHSIHNVADQEVIYQDISIEGPNGIIRTSPHVD 383
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: D7G946_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G946_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 1.220e-74
Identity = 127/206 (61.65%), Postives = 158/206 (76.70%), Query Frame = 1 
Query:  508 MKDNQIDWDCVFGPDSLAEVNSKGGYMTSC--SKRDYACSRFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKI 1119
            +KD QIDWDCVFGP+SL EV  +GG  T+C  + + + CSRF+V K+EERSE KV EGPEGF F  GE+Y FKYSF+  E M+V+ ++TH GQLKG+ G     G M+KGDPI+SLTAN  GL VRFSN +S +++H+GL+  L+W   TG WVHV+I+TTFG+SMEV +SGAV GKAVWP  LKPVAWH D++ VRMKLGLYH I
Sbjct:  111 LKDYQIDWDCVFGPESLEEVFQRGGDFTTCPGATKAHPCSRFIVDKDEERSEVKVQEGPEGFPFLYGEEYIFKYSFQAIEDMQVATRFTHLGQLKGSAG-----GYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVNISGAVSGKAVWPSDLKPVAWHRDSEMVRMKLGLYHSI 311
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 1.670e-69
Identity = 132/277 (47.65%), Postives = 165/277 (59.57%), Query Frame = 1 
Query:  478 QGKIDITCDPMKDNQIDWDCVF------------------------------GPDSLAEV-------NSKGGYMTSCSKRDYACSRFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDST-KNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTA 1194
            + +IDITC+P KDN IDWDC+F                              G DS  EV         +    TSC+ +D  CSRF+V K  +R+ETKV  GPEGF F KGE+Y +KYSF+  EGMK+ K++TH GQ+KG    G+     + GDPI S++AN DGL VRFSN D T  +++     + NW D TG WVHV I T FGE MEV  +G V GK VWPK   PVAW++     RMKLGLYHK +QV DG VE RD+SI+GPNG+I T+
Sbjct:   49 EARIDITCEPKKDNVIDWDCIFVSVKLVAVPLINVLRTNTRSSSPPRFDLLKGEDSEEEVLKYRSKDKKERATHTSCTDKDRPCSRFIVPKNVQRAETKVAYGPEGFPFLKGERYIYKYSFRAVEGMKLGKRFTHIGQIKGAYNGGQT----VDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWEDATGEWVHVTIDTVFGEFMEVEFAGGVSGKFVWPKDKTPVAWNNKGKMARMKLGLYHKEEQVGDGEVEIRDVSIEGPNGIIRTS 321
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: D7FK18_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK18_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.720e-69
Identity = 106/164 (64.63%), Postives = 125/164 (76.22%), Query Frame = 1 
Query:  988 GESMEVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTARDTDSAGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCADLCDDSKYFGLQYGNECWCGSSKDKPNRHGTSKKCTMTCAGRDRIKYCGGYFAMDV 1479
            G   EV LSGAVEG+AVWP +LKPVAWH DADRVRMKLGLYHK DQV+DG VEYRDISI+GPNG+I T+ + D  GHLY+GC+ DD  +   SGKKYVDAHMT +MCADLCD ++YFG Q G ECWC +SKD+P +HG SK C   C G  R + CGG  ++ V
Sbjct:   40 GSLDEVRLSGAVEGRAVWPSNLKPVAWHRDADRVRMKLGLYHKTDQVYDGKVEYRDISIEGPNGIIRTSPEPDHEGHLYVGCFADDDDDHVFSGKKYVDAHMTNEMCADLCDGTRYFGTQGGTECWCSASKDRPRKHGKSKSCNKACPGTSRTETCGGRSSLSV 203
[Close]
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 8.180e-61
Identity = 123/229 (53.71%), Postives = 149/229 (65.07%), Query Frame = 1 
Query:  622 RFVVKKEEERSETKVNEGPEGFDFNKGEKYTFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANTDGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESM----------------------------------EVTLSGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDISIQGPNGVISTARDTD 1206
            RF+V K+EERSE KV EGPEGF F  GE+Y FKYSFK  E MKV+ +YTH GQLKG+ G     G MIKGDPI+SLTAN  GL VRFSN ++ +++H+GL+  L+W   TG WVHV+I+TTFG+SM                                  +V +SGAV G AVWP  LKPVAWH D++ VRMKLGLYH I  VHD  V YRDISI+GPNG+I T+  +D
Sbjct:   92 RFIVDKDEERSEVKVQEGPEGFPFLYGEEYNFKYSFKLIEDMKVATRYTHLGQLKGSAG-----GYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVVRRDGLGCQARALSCAEGFDTTRLFTSCSRAFEQVNISGAVSGTAVWPSDLKPVAWHRDSEMVRMKLGLYHSIHNVHDQEVIYRDISIEGPNGIIRTSPPSD 315
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig983.20820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAW5_9PHAE2.180e-22567.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH2_ECTSI6.360e-11247.79WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDJ9_ECTSI8.770e-11050.40Oxt n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
D8LDH3_ECTSI9.500e-10748.58WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXY2_9PHAE2.470e-8240.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQZ0_9PHAE1.110e-7955.64WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G946_ECTSI1.220e-7461.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5S3_9PHAE1.670e-6947.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK18_ECTSI1.720e-6964.63WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JBB3_9PHAE8.180e-6153.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig983contigS-firma_M_contig983:16446..23677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.7
Seed ortholog evalue1.6e-98
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons13
Model size2728
Cds size1386
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828822.3747106-UTR-S-firma_M_contig983:16445..172751622828822.3747106-UTR-S-firma_M_contig983:16445..17275Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 16446..17275 -
1697105183.8201509-UTR-S-firma_M_contig983:16445..172751697105183.8201509-UTR-S-firma_M_contig983:16445..17275Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 16446..17275 -
1622828822.3879893-UTR-S-firma_M_contig983:17330..174311622828822.3879893-UTR-S-firma_M_contig983:17330..17431Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 17331..17431 -
1697105183.8353245-UTR-S-firma_M_contig983:17330..174311697105183.8353245-UTR-S-firma_M_contig983:17330..17431Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 17331..17431 -
1622828822.548818-UTR-S-firma_M_contig983:23252..235391622828822.548818-UTR-S-firma_M_contig983:23252..23539Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 23253..23539 -
1697105183.9879885-UTR-S-firma_M_contig983:23252..235391697105183.9879885-UTR-S-firma_M_contig983:23252..23539Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 23253..23539 -
1622828822.5622206-UTR-S-firma_M_contig983:23553..236771622828822.5622206-UTR-S-firma_M_contig983:23553..23677Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 23554..23677 -
1697105183.9973938-UTR-S-firma_M_contig983:23553..236771697105183.9973938-UTR-S-firma_M_contig983:23553..23677Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig983 23554..23677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828822.4010627-CDS-S-firma_M_contig983:17431..175581622828822.4010627-CDS-S-firma_M_contig983:17431..17558Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 17432..17558 -
1697105183.8467026-CDS-S-firma_M_contig983:17431..175581697105183.8467026-CDS-S-firma_M_contig983:17431..17558Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 17432..17558 -
1622828822.4136252-CDS-S-firma_M_contig983:17850..179151622828822.4136252-CDS-S-firma_M_contig983:17850..17915Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 17851..17915 -
1697105183.8572848-CDS-S-firma_M_contig983:17850..179151697105183.8572848-CDS-S-firma_M_contig983:17850..17915Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 17851..17915 -
1622828822.4268374-CDS-S-firma_M_contig983:18374..186201622828822.4268374-CDS-S-firma_M_contig983:18374..18620Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 18375..18620 -
1697105183.8676372-CDS-S-firma_M_contig983:18374..186201697105183.8676372-CDS-S-firma_M_contig983:18374..18620Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 18375..18620 -
1622828822.4401665-CDS-S-firma_M_contig983:19194..192511622828822.4401665-CDS-S-firma_M_contig983:19194..19251Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 19195..19251 -
1697105183.8779218-CDS-S-firma_M_contig983:19194..192511697105183.8779218-CDS-S-firma_M_contig983:19194..19251Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 19195..19251 -
1622828822.4525995-CDS-S-firma_M_contig983:19831..199561622828822.4525995-CDS-S-firma_M_contig983:19831..19956Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 19832..19956 -
1697105183.896433-CDS-S-firma_M_contig983:19831..199561697105183.896433-CDS-S-firma_M_contig983:19831..19956Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 19832..19956 -
1622828822.46612-CDS-S-firma_M_contig983:20381..205561622828822.46612-CDS-S-firma_M_contig983:20381..20556Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 20382..20556 -
1697105183.912746-CDS-S-firma_M_contig983:20381..205561697105183.912746-CDS-S-firma_M_contig983:20381..20556Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 20382..20556 -
1622828822.480241-CDS-S-firma_M_contig983:20883..211241622828822.480241-CDS-S-firma_M_contig983:20883..21124Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 20884..21124 -
1697105183.9318452-CDS-S-firma_M_contig983:20883..211241697105183.9318452-CDS-S-firma_M_contig983:20883..21124Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 20884..21124 -
1622828822.4921167-CDS-S-firma_M_contig983:21413..215511622828822.4921167-CDS-S-firma_M_contig983:21413..21551Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 21414..21551 -
1697105183.9424107-CDS-S-firma_M_contig983:21413..215511697105183.9424107-CDS-S-firma_M_contig983:21413..21551Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 21414..21551 -
1622828822.5080917-CDS-S-firma_M_contig983:22044..221241622828822.5080917-CDS-S-firma_M_contig983:22044..22124Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 22045..22124 -
1697105183.9532285-CDS-S-firma_M_contig983:22044..221241697105183.9532285-CDS-S-firma_M_contig983:22044..22124Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 22045..22124 -
1622828822.5210238-CDS-S-firma_M_contig983:22342..224091622828822.5210238-CDS-S-firma_M_contig983:22342..22409Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 22343..22409 -
1697105183.9640946-CDS-S-firma_M_contig983:22342..224091697105183.9640946-CDS-S-firma_M_contig983:22342..22409Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 22343..22409 -
1622828822.5341132-CDS-S-firma_M_contig983:23187..232521622828822.5341132-CDS-S-firma_M_contig983:23187..23252Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 23188..23252 -
1697105183.9740672-CDS-S-firma_M_contig983:23187..232521697105183.9740672-CDS-S-firma_M_contig983:23187..23252Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig983 23188..23252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig983.20820.1prot_S-firma_M_contig983.20820.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig983 17432..23252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig983.20820.1

>prot_S-firma_M_contig983.20820.1 ID=prot_S-firma_M_contig983.20820.1|Name=mRNA_S-firma_M_contig983.20820.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=462bp
MRCFLSLRLLVACGLIGSTTLVQGKIDITCDPMKDNQIDWDCVFGPDSLA
EVNSKGGYMTSCSKRDYACSRFVVKKEEERSETKVNEGPEGFDFNKGEKY
TFKYSFKPQEGMKVSKKYTHFGQLKGTIGKGKVKGVMIKGDPIFSLTANT
DGLMVRFSNRDSTKNFHEGLEKHLNWADTTGLWVHVKIVTTFGESMEVTL
SGAVEGKAVWPKHLKPVAWHDDADRVRMKLGLYHKIDQVHDGMVEYRDIS
IQGPNGVISTARDTDSAGHLYLGCYGDDRKERALSGKKYVDAHMTTKMCA
DLCDDSKYFGLQYGNECWCGSSKDKPNRHGTSKKCTMTCAGRDRIKYCGG
YFAMDVYEHEGKPEGIPTGATYLGCFADDTQDRALTLKSKSTSTMDYASC
KTYCEGAKDTKYFGVQYGKECFCGKSENDYNEHGPAICNMKCSGDDGLTC
GGFGAMNVFKV*
back to top

mRNA from alignment at S-firma_M_contig983:16446..23677-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig983.20820.1 ID=mRNA_S-firma_M_contig983.20820.1|Name=mRNA_S-firma_M_contig983.20820.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=7232bp|location=Sequence derived from alignment at S-firma_M_contig983:16446..23677- (Sphaerotrichia firma Sfir_13m male)
TTCTATGCACCCTTCTGCGCTGCTGTTGGTGGCCACCTAGGCGCGAAAAC
CCTCGCTGGCGCGCAGTAGACGAGATACCGAGCACCAGGTACAGGGACTT
CAACACCTGTATTGTTTTTCCAACTTTGTTTTTCCAACGTCGGCGCTCGT
GCAGACTGCTGCTGTGCTATGGTTGCTTGAAAGGGCTTATCCCTCTCTGC
CTCGATGGCTGCTGCGATGGTATATCACGCCGCACACCCTTAGCGAATTC
ACCCTGGTCCACGTAGCACTTCGTACCCCCGCGTGCCGCGGAGACAACAA
CAACTACATGCACCACGCATCTTGACGGCAACAGCAGTCATCATCGCCTA
CGGTCAGCACGGGCACGCGCACACTGACTCGCTGAATCTGCCTCTCGTTT
TTTAGTCGGACAGAACTCCATAGGGATGCGTTGCTTCCTTTCGCTCCGGC
TGCTGGTCGCCTGCGGCCTCATCGGGAGCACAACCTTGGTGTGAGTGGCG
CTTTTCGAGGTCGCTTGCGACGATAGTTTTTTTGGGGCGTTTTCTGTTGC
GGGCGTGCCGACGAGGTTGCAACCACGCGGTGGGTGAGTGCGTAGACCTG
TCTTTAGAGATGGGTACAATCGGATCAAAACACCAGGTGTGATGGGGGCC
GCAGTGGTCCTACCCCCGTTTGCTTAGAACACCCCTCAGCGCTGTGAGGA
GGCAGCTTACCGGGGTCATCAAATACCTCGCACCGCCCAAACCGATATTC
CTTCTCTCGGTAATTGCAATTTAGCCCGGTCTAAAGCACTTATCATCGGG
TTACGACATTCAGTCGCTCGACTGGTTGCCGGCGCAAGGAATATGAGAAG
AACAGTGCAGCGTAGATGTATTCTCTGGATACTACCTTGTGTTATTTCAG
CCGTCAATCGCCCTGTCCTACCACCATGCATGTGGAACCGCTGTCTCGCT
GTTATACTAGAAGAGTATTCTCTTACCGAGACCGTCTGGAAAGACGTGGA
ATCACAGGGAACTAAGGTGTCCATAGGATATCACCCAAAAGGTTAATGGT
AACTACACAGCTTGACGACGGAGGGCTTAGAGCAATCGGCGGCGTGGCGT
CTGTTCCCGGCCCTGTGAGGCTTCCACAAGAGGGGGGTCAGGCGCTTGCG
TTTCCGCGCTTGTTTGCGATGAATGTGTACGTCTACACCACCGATGAAAA
GCGAATATTGCCTTTGCCTGACGCGCACCGCCCAATTGGCGTTTCGCGTT
CGTTCGGGGGGGAAACAGGCAGGGGAAGATCGACATCACGTGCGATCCGA
TGAAGGACAACCAGATCGATTGGGACTGCGTGTTTGTGAGTGGAATGAAG
ACGAGCCGTCGGGGCCGCCGTTCTTTGGGGGCTCACAGGAATTTGTTTTT
TTCGCACCGCAGCGCTGCTGGGTGATGATGGTTTTTCGACCGCCACGATG
AGATCCCTTCCCCGCCCTTGTTTCTGCGGCTTAAGCCTTTTTCGCATGCC
CTCGTCCATCGGTCACGTATGTAACCATTTCGCCTTGACCGCACACCTGA
AAGGGGCCTGACTCACTCGCGGAGGTGAACTCCAAGGGCGGCTACATGAC
TTCGTGTTCAAAGCGCGATTATGCGTGCTCTCGGTGAGTCAGCAGCTCCG
TGCTAGCGTGCGTATGCAACCCTGAGGAAGGCGGGTATGCACTTGTGCTG
CTTCCGGTTAGCGTCCAGTAGGTGTGTGTCTTACATGCGACGAACTTCCT
GGTACTGCTTTGGCCTTCTTTTCTTTTCTTTTCTTGTCGTTTTCTCGGCA
TCGAACTTCATGAGTTTAGGATTACACCCACCCGACATGCTTCTCCGTGG
GATTGATGGACTCCTTCGAAACGAGGAGTGCACGCTGTTGACGCCATTTG
CATGGTACACACGCCATCGCTTTCAACTGGTGCTGCCTATCGCTTGCTGC
CAGCGCTTCATCTCTCTTCCAATATTTGTCGCTGTGTAAGTGAATTGCTG
GTTGCGTCAACGGTGCTACAGCCCACCACCTCACGCCTAAGAGAAGGAGA
CTTGACAGATGCACACTGTTCGAAAGAAGGTGCGGACCGGTGCCTGCCTT
GAAACCAACACTTTTCATCCCCACAGGTTCGTCGTAAAAAAAGAGGAAGA
GAGATCCGAGACGAAGGTGAACGAAGGGCCAGAAGGTTTCGACTTCAACA
AGGGCGAGAAGTACACCTTCAAGTACAGCTTCAAGCCGCAGGAAGGGATG
AAAGTGTCCAAGAAGTGAGGGTTATTCTAGAATGATCGATTTTCTCGTGA
TCACAAGTTGTCGTCGTCGTCGTTTTGGTGTTGCTTGTCGCTTTGACATC
GGTGTTCAAAAGACTTATCGAAATATGGACTGGAAACGACAAATTTCGTG
GCGTCAGTAAAGATAGCGTGTTTCAGGCGTACAGCTGCCTGGCTGATGTG
TGGCCGCAGGCACGAAAATTCCGACCAATGATCAACCCTTCACGACCTGC
AAGCAAGCTCCAAACGCGGAAGAACGCCGGCGCGCGCGTGAAAAACGCCG
CAGATACACCCACTTCGGCCAGCTCAAGGGTACCATCGGCAAAGGAAAGG
TCAAGGGCGTCATGATCAAGGGCGACCCGATCTTCTCCCTCACCGCCAAC
ACGGACGGGCTGATGGTCCGCTTCAGCAACAGGGACAGCACCAAGAACTT
CCACGAGGGCCTGGAGAAGCACCTGAACTGGGCCGACACCACCGGGCTGT
GGGTGCACGTGAAGATCGTCACTACCTTCGGGGAGTCCATGGAGGTGAGG
GAGAAAACGGCGTTGTGCGCTCGAATCCGCACGACAAGGAGCACGTTTCG
GCGCCGAACTTTTCACACGATGTGCACGCACGTATGCACCTTTTCGAAGT
TGTGTTCTCGCCCGCTACGCAGCGCCTTCGGGGGGGCCTCAACCAGGAAA
CTAGCCGGAAGACAACAACGCGGTGCGCCAGTGGAACGGCGTGAAAAGGC
TGCCGCAGAGGACTGCACTCCCCGTTGCTCACATGGCTTGTTGCGCCTAA
TTTAGCGCGGAAACCACCCTGTTGTGTTCGCAGTCTTGAGACGTGACTCG
CTGACCGGCGCTACTTTTCAGGTGACCCTGTCCGGGGCCGTAGAGGGGAA
GGCCGTTTGGCCGAAGCACCTCAAGCCTGTCGCGTGGCACGACGACGCCG
ACCGGGTGCGGATGAAGCTGGGCCTGTACCACAAGATCGACCAGGTTCAC
GACGGGATGGTGGAGTACAGAGACATCTCGATCCAGGGGCCGAACGGCAA
GTTTCAGTCAAGCTTCAGTCATCGCGCTGATTGCAGAACCACTTTGTTTT
TCGTCACGGCGTTCGAGAATGCGTACAATAGCGCTCCAGAATCGGGCAGG
TGCTTGAAGCAGTCACGGGGACATAGTAGTAGTTCCAGTCTGCGCCCCCC
CCCAGCAAAGTGCTTGGCTGCTGAACCATGCGTTTGTGGCCGAATACTTG
TTCCTTGCGGAAAACAAGAGGAAACAAGACGAGATGTGATTCCCATCGAG
GAACCTACAATCAATCGCGTGTGTGTGTCTCTTTTTTCCCCGAAGGAGAG
GTAGACAAAATTGATTGTTGTTGGACTCAGGTCATGTTGCACGCGAAAGT
GTTTCCCGAAGTCGGTCGGAGTAACACAGGGTTCCTTCGGCTGCCGTCTG
CCGTTCCCCCGAACACGACAGGAGTAATAAGCACAGCTCGCGACACCGAC
TCCGCGGGACACCTGTACCTCGGCTGTTACGGGGACGACCGTAAGGAGAG
AGCGCTGTCGGGCAAAAAGTACGTCGATGCCCACATGACCACAAAGGTAC
GAATGTCAAGCTTACGGAGGCACGAGCCTTCCTACTACGAAATTGACACC
TAGGATGAAGCCCTTCTGGAACGTCGAGAGCTAAGGTCCAGGTTTTCGGG
ACGAAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGGGAGAGGGAGAGGGAG
AGGGAGCAATTGAAAAAGGGATATAGGCGAAGGAGACCGTGCGCGTCGGC
CTCATCGAGCTCCGCGATGGGCTGTCGCCTGTGGAACACGGCAAGGCCGC
CAACTACACGGAGTGTTCGTTGGTTGGCGACGAACCTCTCGGGACTGGTT
CCCCGCCCGGCCAAACCGGGTCCTCACGCTGATTGGGGGCACTTCGAGCG
CGTCTGTCGGCTCTTTCGTTGTAGCACGTCGAGCCCCTTTGTGAATGACG
TTCCCGGTAGGCAATATGTGCATCGTGCCCATCGTCTCTACGCGCCTTTG
CTTCTTGTCCGAAACGGACAATCCTCCGTGCATGATGATTGATTGGTGGA
AGGTTGAGATTGAGCTAATTGACCCCCATTTTGGCGTCGTCGCACCGCGT
GCCCCGGGTTGGTGCCTTGGCGTCAGATGTGCGCCGATCTCTGCGATGAC
TCCAAGTACTTCGGTCTTCAGTACGGAAACGAGGTACGAGAGCACTACAA
GTTGGCATCGACTCCACGAAAAAAAATACTGGATTTTGGAGAATGTGCAA
AACTGACACACGATTTTTTGTTTTAACCTGAGGCCTCTACTCTGACATGT
GCGACGGGAATAAATGCACCAAGCGAACGTGCCAGAAGTTGGTTTCGCGC
AACAGATACGATCTAGTTTTGTCCGGCGTCGTTCTGTAGCGCCCACAACG
CAACGTCTACGAAAACTGATACGCATCCCGTCCCTGCAAAGTGCGGCGCT
CAGCCGCGGGCGTTCGACACCGTAGGGCGTGGTCGTGAGGCGTCTGTTGG
TACAATAAATAGTCCGTCTCCCGAGAACACCAGTGACGGCACCTGACCAA
TCAAAATCTACGTGCGCTGCCAAAAGCAAACCGTTGTTTTGAACGTACAT
GCGTGTGCACCATCCTTTTCTTTTTGAGCTTCGCGTTGTGCTTCGTTTTG
CTTGCTTTCTACAGCCAGCCCCAAATAACTCATGAAGCCAACCAGCGCCT
CATGCCCCCTCCCCCCTTCCTCGTGATTTTGGGTTTGCTTTTCGGCGCGT
TTGACAGTGCTGGTGTGGGTCTTCCAAGGACAAGCCCAACCGGCACGGGA
CGTCGAAGAAGTGCACAATGACCTGCGCCGGCAGGGACCGCATCAAGTAC
TGCGGCGGGTATTTCGCCATGGACGTCTACGAGCACGAGGGCAAGCCGGA
AGGCATCCCCACGGGCGCCACGTACTTGGGCTGCTTCGCGGACGACACCC
AGGACAGGGCGCTGACGCTCAAGAGCAAGAGCACCTCCACGATGGACTAC
GCTGTGAGGATGGGCGGGCGCGTTCGTGACCACGATTCGTCGCCAGATTT
TGTTTTGTTCTCGAAATTCACGATCGGTCGTGTCTCGTGTTCGTAGGCCA
AGGGTCGCGTTTTCATTTGTCATTGTACAAGTAGTCTATATACATAAAAA
AAAAAACTCAAGCTTGTGTCCGTAGGAGAGCAGTTTTTTTTGTATCCTTG
ACTCTCCATGTCCATTGGGTAGTTCTTGAGGCAAAGTCCGTAGTTCTCTC
TAAGTTCCCATTGGCTTGAGATAGTTCGCACAGAGATTTCCGTCGATGAA
ACCATCGTGAAAGCATGACGACTGGCCAAAACAAATCCTGCGTGGGCCCG
TTCCCTGTCTGTCTCGTCTCGATGTTAATCTACTTTCAGCAGAAATATTT
GTCTGACCGCACACATACGCATCGGTTGCACGTACGTGCTGTTTCTCGTC
GTCCGTCCTCAGTCCTGCAAGACATACTGCGAGGGTGCCAAGGACACCAA
GTACTTCGGGGTCCAGTACGGCAAGGAGTGAGTCGAGTCCTAAATTTTTC
CGTTCGTGTACTCGAAAGCCGTGTATGTATGCATACGTAGTCGTCTACAC
GGTTTGTTCTCACACTAGCCTACAGCCACGTGGTAGAGAACCGCGCATTT
TCTTTTTCAGGTCCGTCTTTGAAAGCTCCACACAGAGCAGCATTGCATGG
GCGCCCCGACCCTTTCCTCGCTGGCCGTGGCGAATCTTAATCTCCCACCA
AAGCATCAGTCATACAATGCTCGAATACTCCCTCGTTACCGACGAACGAC
AACAACGAAAAACAACAAGGTGCTTCTGCGGGAAGTCGGAGAACGATTAC
AACGAGCACGGGCCGGCCATCTGTAACATGAAGTGCAGCGGAGACGACGG
CTTGACTTGTGGCGGCTTCGGCGCCATGAACGTTTTCAAGGTCTAGACTA
GACGACATCTTCATTTTATAATAGATGTAGTCAAAGGCGAAAATGCATCG
GGCAAGCTCCACAAAGTGCTTTGTATCTTCCAATTTTTGAGATTTTCGTT
GAGTTTGTTCCTGGGCCGTCAGTCCGTCGTTCGTGCCATCCATTCCATGC
AGTGTTGGTGCTGCTTCTTGTGTTGGCCCGTGTGCATGTAGACTATGTAT
TGCATTTGCCAAGGGATTCACAAAATGTATGCTTGCTTGTGGATTTTGAG
CGATTAGGGGCGGCCGTGTCGCCAGGTCAACACAGCATGCGAGCTTGTTT
TCTGTCGGCAGGAGTTCTCAGGGTTGGTGGTCACGCGTGCACGGCATTTG
TTGTTTGTGAGTAGTACCGTATGCACATCTTGTTGGTCCCTTCCTCGCTT
GCTCGCCCTTTCTTGCACCAAGTGGTGAAGCACCATCAAGTGGTGAAGAG
GATGGTAAATAGTGAAGCATTTTCAACAAAATGAAAGGGTGCGAAATAGT
CTAGGTGAGGAGATCTCTTGAGGAACACTCACCACCCCAGTTAGAGCTCA
TTCGTGGTGAACGAGATGGCATGCGTGCACCGGTACATCCAGCAGTAGGA
GGAGAGATCCGCAGAGAGCTCACCACCTGTCGCTCCGAGATCTCGTGTGG
TGTCGTCTATTGCACGAGGAACATTTATTTATCAATGAAGCGTGCAGCCG
TTTTTGGCATGACATGGAAATACAAGTAGCATACGGTAGTGCTAGTCATC
TTAGCGTTCTACCTGACCCCGGGCCCCTGGCGTGCCGGGCTGAAACCTAA
TATTTTCATTGTGGAGCTGGTTGGAGATAGCAGGGCTCTAGTGTTTGATC
CAGCGTCCAAGGACGAGATAGCAGGGCTCTAGTGTTTGATCCAGCGTCCA
AGGACGATACTTGTATATACTGAAGCGGTCGCTCGGCCAAGTGTACGGCG
TTTTCTCTTCCCCATCACCGCTTGCCGTAAAC
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig983:16446..23677-

>mRNA_S-firma_M_contig983.20820.1 ID=mRNA_S-firma_M_contig983.20820.1|Name=mRNA_S-firma_M_contig983.20820.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2772bp|location=Sequence derived from alignment at S-firma_M_contig983:16446..23677- (Sphaerotrichia firma Sfir_13m male)
ATGCGTTGCTTCCTTTCGCTCCGGCTGCTGGTCGCCTGCGGCCTCATCGG
GAGCACAACCTTGGTATGCGTTGCTTCCTTTCGCTCCGGCTGCTGGTCGC
CTGCGGCCTCATCGGGAGCACAACCTTGGTGCAGGGGAAGATCGACATCA
CGTGCGATCCGATGAAGGACAACCAGATCGATTGGGACTGCGTGTTTGCA
GGGGAAGATCGACATCACGTGCGATCCGATGAAGGACAACCAGATCGATT
GGGACTGCGTGTTTGGGCCTGACTCACTCGCGGAGGTGAACTCCAAGGGC
GGCTACATGACTTCGTGTTCAAAGCGCGATTATGCGTGCTCTCGGGGCCT
GACTCACTCGCGGAGGTGAACTCCAAGGGCGGCTACATGACTTCGTGTTC
AAAGCGCGATTATGCGTGCTCTCGGTTCGTCGTAAAAAAAGAGGAAGAGA
GATCCGAGACGAAGGTGAACGAAGGGCCAGAAGGTTTCGACTTCAACAAG
GGCGAGAAGTACACCTTCAAGTACAGCTTCAAGCCGCAGGAAGGGATGAA
AGTGTCCAAGAAGTTCGTCGTAAAAAAAGAGGAAGAGAGATCCGAGACGA
AGGTGAACGAAGGGCCAGAAGGTTTCGACTTCAACAAGGGCGAGAAGTAC
ACCTTCAAGTACAGCTTCAAGCCGCAGGAAGGGATGAAAGTGTCCAAGAA
ATACACCCACTTCGGCCAGCTCAAGGGTACCATCGGCAAAGGAAAGGTCA
AGGGCGTCATGATCAAGGGCGACCCGATCTTCTCCCTCACCGCCAACACG
GACGGGCTGATGGTCCGCTTCAGCAACAGGGACAGCACCAAGAACTTCCA
CGAGGGCCTGGAGAAGCACCTGAACTGGGCCGACACCACCGGGCTGTGGG
TGCACGTGAAGATCGTCACTACCTTCGGGGAGTCCATGGAGATACACCCA
CTTCGGCCAGCTCAAGGGTACCATCGGCAAAGGAAAGGTCAAGGGCGTCA
TGATCAAGGGCGACCCGATCTTCTCCCTCACCGCCAACACGGACGGGCTG
ATGGTCCGCTTCAGCAACAGGGACAGCACCAAGAACTTCCACGAGGGCCT
GGAGAAGCACCTGAACTGGGCCGACACCACCGGGCTGTGGGTGCACGTGA
AGATCGTCACTACCTTCGGGGAGTCCATGGAGGTGACCCTGTCCGGGGCC
GTAGAGGGGAAGGCCGTTTGGCCGAAGCACCTCAAGCCTGTCGCGTGGCA
CGACGACGCCGACCGGGTGCGGATGAAGCTGGGCCTGTACCACAAGATCG
ACCAGGTTCACGACGGGATGGTGGAGTACAGAGACATCTCGATCCAGGGG
CCGAACGGTGACCCTGTCCGGGGCCGTAGAGGGGAAGGCCGTTTGGCCGA
AGCACCTCAAGCCTGTCGCGTGGCACGACGACGCCGACCGGGTGCGGATG
AAGCTGGGCCTGTACCACAAGATCGACCAGGTTCACGACGGGATGGTGGA
GTACAGAGACATCTCGATCCAGGGGCCGAACGGAGTAATAAGCACAGCTC
GCGACACCGACTCCGCGGGACACCTGTACCTCGGCTGTTACGGGGACGAC
CGTAAGGAGAGAGCGCTGTCGGGCAAAAAGTACGTCGATGCCCACATGAC
CACAAAGGAGTAATAAGCACAGCTCGCGACACCGACTCCGCGGGACACCT
GTACCTCGGCTGTTACGGGGACGACCGTAAGGAGAGAGCGCTGTCGGGCA
AAAAGTACGTCGATGCCCACATGACCACAAAGATGTGCGCCGATCTCTGC
GATGACTCCAAGTACTTCGGTCTTCAGTACGGAAACGAGATGTGCGCCGA
TCTCTGCGATGACTCCAAGTACTTCGGTCTTCAGTACGGAAACGAGTGCT
GGTGTGGGTCTTCCAAGGACAAGCCCAACCGGCACGGGACGTCGAAGAAG
TGCACAATGACCTGCGCCGGCAGGGACCGCATCAAGTACTGCGGCGGGTA
TTTCGCCATGGACGTCTACGAGCACGAGGGCAAGCCGGAAGGCATCCCCA
CGGGCGCCACGTACTTGGGCTGCTTCGCGGACGACACCCAGGACAGGGCG
CTGACGCTCAAGAGCAAGAGCACCTCCACGATGGACTACGCTTGCTGGTG
TGGGTCTTCCAAGGACAAGCCCAACCGGCACGGGACGTCGAAGAAGTGCA
CAATGACCTGCGCCGGCAGGGACCGCATCAAGTACTGCGGCGGGTATTTC
GCCATGGACGTCTACGAGCACGAGGGCAAGCCGGAAGGCATCCCCACGGG
CGCCACGTACTTGGGCTGCTTCGCGGACGACACCCAGGACAGGGCGCTGA
CGCTCAAGAGCAAGAGCACCTCCACGATGGACTACGCTTCCTGCAAGACA
TACTGCGAGGGTGCCAAGGACACCAAGTACTTCGGGGTCCAGTACGGCAA
GGATCCTGCAAGACATACTGCGAGGGTGCCAAGGACACCAAGTACTTCGG
GGTCCAGTACGGCAAGGAGTGCTTCTGCGGGAAGTCGGAGAACGATTACA
ACGAGCACGGGCCGGCCATCTGTAACATGAAGTGCAGCGGAGACGACGGC
TTGACTTGTGGCGGCTTCGGCGCCATGAACGTTTTCAAGGTCTAGGTGCT
TCTGCGGGAAGTCGGAGAACGATTACAACGAGCACGGGCCGGCCATCTGT
AACATGAAGTGCAGCGGAGACGACGGCTTGACTTGTGGCGGCTTCGGCGC
CATGAACGTTTTCAAGGTCTAG
back to top