mRNA_S-firma_M_contig9788.20773.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9788.20773.1
Unique NamemRNA_S-firma_M_contig9788.20773.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9788.20773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9788contigS-firma_M_contig9788:544..675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828815.9543731-CDS-S-firma_M_contig9788:543..6751622828815.9543731-CDS-S-firma_M_contig9788:543..675Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9788 544..675 +
1697105179.7516491-CDS-S-firma_M_contig9788:543..6751697105179.7516491-CDS-S-firma_M_contig9788:543..675Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9788 544..675 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9788.20773.1prot_S-firma_M_contig9788.20773.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9788 544..675 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9788.20773.1

>prot_S-firma_M_contig9788.20773.1 ID=prot_S-firma_M_contig9788.20773.1|Name=mRNA_S-firma_M_contig9788.20773.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=44bp
FVDVVPVLITFQGQNRAAMCTLALAEKVGVPKKRAGQFGDEALF
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mRNA from alignment at S-firma_M_contig9788:544..675+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9788.20773.1 ID=mRNA_S-firma_M_contig9788.20773.1|Name=mRNA_S-firma_M_contig9788.20773.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=132bp|location=Sequence derived from alignment at S-firma_M_contig9788:544..675+ (Sphaerotrichia firma Sfir_13m male)
TTCGTCGATGTGGTGCCTGTGCTGATTACCTTTCAAGGACAGAACCGAGC
TGCCATGTGCACTTTGGCACTGGCGGAGAAGGTGGGGGTCCCGAAGAAGC
GAGCGGGGCAGTTTGGAGACGAAGCTCTTTTC
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Coding sequence (CDS) from alignment at S-firma_M_contig9788:544..675+

>mRNA_S-firma_M_contig9788.20773.1 ID=mRNA_S-firma_M_contig9788.20773.1|Name=mRNA_S-firma_M_contig9788.20773.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=264bp|location=Sequence derived from alignment at S-firma_M_contig9788:544..675+ (Sphaerotrichia firma Sfir_13m male)
TTCGTCGATGTGGTGCCTGTGCTGATTACCTTTCAAGGACAGAACCGAGC
TGCCATGTGCACTTTGGCACTGGCGGAGAAGGTGGGGGTCCCGAAGAAGC
GAGCGGGGCAGTTTGGAGACGAAGCTCTTTTCTTCGTCGATGTGGTGCCT
GTGCTGATTACCTTTCAAGGACAGAACCGAGCTGCCATGTGCACTTTGGC
ACTGGCGGAGAAGGTGGGGGTCCCGAAGAAGCGAGCGGGGCAGTTTGGAG
ACGAAGCTCTTTTC
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