mRNA_S-firma_M_contig9781.20767.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9781.20767.1
Unique NamemRNA_S-firma_M_contig9781.20767.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9781.20767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9781contigS-firma_M_contig9781:2331..3233 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size905
Cds size615
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828815.5556107-UTR-S-firma_M_contig9781:2330..26181622828815.5556107-UTR-S-firma_M_contig9781:2330..2618Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9781 2331..2618 +
1697105179.5678964-UTR-S-firma_M_contig9781:2330..26181697105179.5678964-UTR-S-firma_M_contig9781:2330..2618Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9781 2331..2618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828815.57033-CDS-S-firma_M_contig9781:2618..32331622828815.57033-CDS-S-firma_M_contig9781:2618..3233Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9781 2619..3233 +
1697105179.5781622-CDS-S-firma_M_contig9781:2618..32331697105179.5781622-CDS-S-firma_M_contig9781:2618..3233Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9781 2619..3233 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9781.20767.1prot_S-firma_M_contig9781.20767.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9781 2619..3233 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9781.20767.1

>prot_S-firma_M_contig9781.20767.1 ID=prot_S-firma_M_contig9781.20767.1|Name=mRNA_S-firma_M_contig9781.20767.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=205bp
MQEPREIIQRDSAGKTGYPSTLVQPLNLRHTKRTRRTTQVHHPSRLCTKQ
AQVLHPTNLQYCRRVHITCLPLTHCTTPICIRLSSRNAEVSASGRRATAH
VEVTKPTAGFPSLPHASARRRVLSGQHPRRGVDSHHLSRYFRRGRKLLAV
ARGDNSRGGSSRKRRGIPGPTSPAFGDGDRFLGRGAGARPRGLRSLRRDN
FLLAL
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mRNA from alignment at S-firma_M_contig9781:2331..3233+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9781.20767.1 ID=mRNA_S-firma_M_contig9781.20767.1|Name=mRNA_S-firma_M_contig9781.20767.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=903bp|location=Sequence derived from alignment at S-firma_M_contig9781:2331..3233+ (Sphaerotrichia firma Sfir_13m male)
GCTCGTTTCGCCCCTGCAAACATCCAGCAAGGCCAAAAAGTCCTATTGTA
TTGATACAATACCCAACTTCGCGAGCACACGGCGGTTCTCTTCGCTGGAG
GGGGTGAGGTTCGCGACGCAAAGAATCTGCCAATACAGTATCATCATTCC
GACTACAGTTTGGCGTTCCTCAGACACCTACATACCTCCTGCCGTTTCGA
AACATTTCTCCTGTGCTCGAGCAAAAAAAACAGACACAGCGATGCCTGCC
ATCTTGGTAAATACCGCAAAATCCGAAGAGAGAGCCAGATGCAGGAACCC
CGCGAGATCATACAACGTGATAGTGCTGGTAAGACAGGATATCCCTCCAC
CCTTGTCCAACCACTCAACTTGCGACACACCAAAAGGACACGCCGTACTA
CACAAGTACATCATCCGAGCCGGCTTTGCACCAAGCAAGCCCAGGTGCTT
CACCCAACCAACCTACAATACTGCCGCCGTGTACATATTACGTGTCTACC
GCTGACGCATTGCACCACTCCCATATGCATACGTCTATCTAGTCGGAACG
CTGAAGTGTCAGCCTCCGGGCGACGAGCTACGGCGCACGTAGAAGTAACC
AAACCAACCGCCGGGTTTCCATCACTGCCGCACGCGAGCGCACGCCGCCG
GGTGCTATCTGGACAGCATCCTCGCCGGGGCGTCGACAGCCATCACCTCT
CTCGCTACTTCCGCCGCGGGAGGAAGCTCCTCGCCGTCGCCAGAGGCGAC
AACTCCCGCGGCGGGAGCAGCAGGAAAAGGCGCGGCATCCCCGGCCCCAC
CAGCCCGGCTTTCGGCGACGGCGACCGCTTCCTCGGCAGGGGAGCCGGGG
CGCGCCCCCGCGGTCTCCGCAGCCTTCGCCGCGACAACTTCCTCCTTGCT
CTC
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Coding sequence (CDS) from alignment at S-firma_M_contig9781:2331..3233+

>mRNA_S-firma_M_contig9781.20767.1 ID=mRNA_S-firma_M_contig9781.20767.1|Name=mRNA_S-firma_M_contig9781.20767.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1230bp|location=Sequence derived from alignment at S-firma_M_contig9781:2331..3233+ (Sphaerotrichia firma Sfir_13m male)
ATGCAGGAACCCCGCGAGATCATACAACGTGATAGTGCTGGTAAGACAGG
ATATCCCTCCACCCTTGTCCAACCACTCAACTTGCGACACACCAAAAGGA
CACGCCGTACTACACAAGTACATCATCCGAGCCGGCTTTGCACCAAGCAA
GCCCAGGTGCTTCACCCAACCAACCTACAATACTGCCGCCGTGTACATAT
TACGTGTCTACCGCTGACGCATTGCACCACTCCCATATGCATACGTCTAT
CTAGTCGGAACGCTGAAGTGTCAGCCTCCGGGCGACGAGCTACGGCGCAC
GTAGAAGTAACCAAACCAACCGCCGGGTTTCCATCACTGCCGCACGCGAG
CGCACGCCGCCGGGTGCTATCTGGACAGCATCCTCGCCGGGGCGTCGACA
GCCATCACCTCTCTCGCTACTTCCGCCGCGGGAGGAAGCTCCTCGCCGTC
GCCAGAGGCGACAACTCCCGCGGCGGGAGCAGCAGGAAAAGGCGCGGCAT
CCCCGGCCCCACCAGCCCGGCTTTCGGCGACGGCGACCGCTTCCTCGGCA
GGGGAGCCGGGGCGCGCCCCCGCGGTCTCCGCAGCCTTCGCCGCGACAAC
TTCCTCCTTGCTCTCATGCAGGAACCCCGCGAGATCATACAACGTGATAG
TGCTGGTAAGACAGGATATCCCTCCACCCTTGTCCAACCACTCAACTTGC
GACACACCAAAAGGACACGCCGTACTACACAAGTACATCATCCGAGCCGG
CTTTGCACCAAGCAAGCCCAGGTGCTTCACCCAACCAACCTACAATACTG
CCGCCGTGTACATATTACGTGTCTACCGCTGACGCATTGCACCACTCCCA
TATGCATACGTCTATCTAGTCGGAACGCTGAAGTGTCAGCCTCCGGGCGA
CGAGCTACGGCGCACGTAGAAGTAACCAAACCAACCGCCGGGTTTCCATC
ACTGCCGCACGCGAGCGCACGCCGCCGGGTGCTATCTGGACAGCATCCTC
GCCGGGGCGTCGACAGCCATCACCTCTCTCGCTACTTCCGCCGCGGGAGG
AAGCTCCTCGCCGTCGCCAGAGGCGACAACTCCCGCGGCGGGAGCAGCAG
GAAAAGGCGCGGCATCCCCGGCCCCACCAGCCCGGCTTTCGGCGACGGCG
ACCGCTTCCTCGGCAGGGGAGCCGGGGCGCGCCCCCGCGGTCTCCGCAGC
CTTCGCCGCGACAACTTCCTCCTTGCTCTC
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