mRNA_S-firma_M_contig9758.20746.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9758.20746.1
Unique NamemRNA_S-firma_M_contig9758.20746.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9758.20746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9758contigS-firma_M_contig9758:684..999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size316
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828813.0660849-CDS-S-firma_M_contig9758:683..9981622828813.0660849-CDS-S-firma_M_contig9758:683..998Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9758 684..998 +
1697105178.0041187-CDS-S-firma_M_contig9758:683..9981697105178.0041187-CDS-S-firma_M_contig9758:683..998Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9758 684..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9758.20746.1prot_S-firma_M_contig9758.20746.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9758 684..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9758.20746.1

>prot_S-firma_M_contig9758.20746.1 ID=prot_S-firma_M_contig9758.20746.1|Name=mRNA_S-firma_M_contig9758.20746.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=105bp
PPSSSLLLASSASLYTFVSFLGTTSNSAQSASEADHSSSAGDGNEPFATG
DSIGRRRSKPQHRIAPVESLKTRPLRLKCGKERTRALSLRPSTCGRYCLL
QLPNA
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mRNA from alignment at S-firma_M_contig9758:684..999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9758.20746.1 ID=mRNA_S-firma_M_contig9758.20746.1|Name=mRNA_S-firma_M_contig9758.20746.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=316bp|location=Sequence derived from alignment at S-firma_M_contig9758:684..999+ (Sphaerotrichia firma Sfir_13m male)
CCACCCTCCAGTTCACTGCTGCTTGCTTCCTCCGCCTCCCTCTACACCTT
CGTCTCCTTTCTAGGCACCACAAGCAATTCGGCGCAATCGGCCTCTGAAG
CCGACCACAGTTCAAGCGCCGGGGACGGCAACGAACCGTTCGCGACGGGA
GACTCCATTGGCCGCAGACGAAGCAAACCGCAGCACCGAATCGCACCGGT
TGAATCACTGAAAACTCGCCCTCTTAGGCTAAAATGCGGAAAAGAACGCA
CGCGAGCCCTCTCTTTGCGCCCTTCTACCTGCGGAAGGTACTGCTTGTTG
CAGCTCCCGAACGCCA
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Coding sequence (CDS) from alignment at S-firma_M_contig9758:684..999+

>mRNA_S-firma_M_contig9758.20746.1 ID=mRNA_S-firma_M_contig9758.20746.1|Name=mRNA_S-firma_M_contig9758.20746.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=630bp|location=Sequence derived from alignment at S-firma_M_contig9758:684..999+ (Sphaerotrichia firma Sfir_13m male)
CCACCCTCCAGTTCACTGCTGCTTGCTTCCTCCGCCTCCCTCTACACCTT
CGTCTCCTTTCTAGGCACCACAAGCAATTCGGCGCAATCGGCCTCTGAAG
CCGACCACAGTTCAAGCGCCGGGGACGGCAACGAACCGTTCGCGACGGGA
GACTCCATTGGCCGCAGACGAAGCAAACCGCAGCACCGAATCGCACCGGT
TGAATCACTGAAAACTCGCCCTCTTAGGCTAAAATGCGGAAAAGAACGCA
CGCGAGCCCTCTCTTTGCGCCCTTCTACCTGCGGAAGGTACTGCTTGTTG
CAGCTCCCGAACGCCCCACCCTCCAGTTCACTGCTGCTTGCTTCCTCCGC
CTCCCTCTACACCTTCGTCTCCTTTCTAGGCACCACAAGCAATTCGGCGC
AATCGGCCTCTGAAGCCGACCACAGTTCAAGCGCCGGGGACGGCAACGAA
CCGTTCGCGACGGGAGACTCCATTGGCCGCAGACGAAGCAAACCGCAGCA
CCGAATCGCACCGGTTGAATCACTGAAAACTCGCCCTCTTAGGCTAAAAT
GCGGAAAAGAACGCACGCGAGCCCTCTCTTTGCGCCCTTCTACCTGCGGA
AGGTACTGCTTGTTGCAGCTCCCGAACGCC
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