mRNA_S-firma_M_contig9740.20733.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9740.20733.1
Unique NamemRNA_S-firma_M_contig9740.20733.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9740.20733.1 vs. uniprot
Match: D7FRX3_ECTSI (Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRX3_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 1.470e-6
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 SRLLVQDLAAKLEAFGLQGAIQEVSMIK 85
            SRLLVQD AAKLEAFGLQGAIQEVSMIK
Sbjct:  314 SRLLVQDCAAKLEAFGLQGAIQEVSMIK 341
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9740.20733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRX3_ECTSI1.470e-696.43Acyl-CoA dehydrogenase n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9740contigS-firma_M_contig9740:772..1193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size173
Cds size153
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9740.20733.1prot_S-firma_M_contig9740.20733.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9740 790..1193 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828811.923474-UTR-S-firma_M_contig9740:771..7891622828811.923474-UTR-S-firma_M_contig9740:771..789Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9740 772..789 -
1697105177.3432503-UTR-S-firma_M_contig9740:771..7891697105177.3432503-UTR-S-firma_M_contig9740:771..789Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9740 772..789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828811.9373932-CDS-S-firma_M_contig9740:789..8571622828811.9373932-CDS-S-firma_M_contig9740:789..857Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9740 790..857 -
1697105177.3613172-CDS-S-firma_M_contig9740:789..8571697105177.3613172-CDS-S-firma_M_contig9740:789..857Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9740 790..857 -
1622828811.950051-CDS-S-firma_M_contig9740:1108..11931622828811.950051-CDS-S-firma_M_contig9740:1108..1193Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9740 1109..1193 -
1697105177.3738267-CDS-S-firma_M_contig9740:1108..11931697105177.3738267-CDS-S-firma_M_contig9740:1108..1193Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9740 1109..1193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9740.20733.1

>prot_S-firma_M_contig9740.20733.1 ID=prot_S-firma_M_contig9740.20733.1|Name=mRNA_S-firma_M_contig9740.20733.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=51bp
VSTSCSGPCREIGGVWSARSHPGGIDDQGSRYSTHELRLLLAIDVNAYRS
*
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mRNA from alignment at S-firma_M_contig9740:772..1193-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9740.20733.1 ID=mRNA_S-firma_M_contig9740.20733.1|Name=mRNA_S-firma_M_contig9740.20733.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=422bp|location=Sequence derived from alignment at S-firma_M_contig9740:772..1193- (Sphaerotrichia firma Sfir_13m male)
GTCTCGACTTCTTGTTCAGGACCTTGCCGCGAAATTGGAGGCGTTTGGTC
TGCAAGGAGCCATCCAGGAGGTATCGATGATCAAGGTGAGGGCGGCGTTT
GGACTGTTGTCACTGAGGTCTGGCATGCCCGATGCCATGACCAGTGACGT
GTCGCAGGTTTAGATGTTTGCACGGCGTTGTCTTCGGCAGTGTTGTCGTG
AATGTGACAGCTGTGTTAATGGTACAGGTGCAGTTGGTGAAGGGGCTCAC
ATGCATGCTGCAATATGTCGGGCATGCTGCTTCATGGCACGCGGCAGCGA
GTAACTGAATCCTCCTCGTCCGACGCCGTAACACAGGATCTCGATACTCG
ACGCATGAACTCAGGCTCCTACTTGCGATCGACGTCAACGCGTATCGAAG
TTGAAATATGAGATTTGTACAC
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Coding sequence (CDS) from alignment at S-firma_M_contig9740:772..1193-

>mRNA_S-firma_M_contig9740.20733.1 ID=mRNA_S-firma_M_contig9740.20733.1|Name=mRNA_S-firma_M_contig9740.20733.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=306bp|location=Sequence derived from alignment at S-firma_M_contig9740:772..1193- (Sphaerotrichia firma Sfir_13m male)
GTCTCGACTTCTTGTTCAGGACCTTGCCGCGAAATTGGAGGCGTTTGGTC
TGCAAGGAGCCATCCAGGAGGTATCGATGATCAAGGTCTCGACTTCTTGT
TCAGGACCTTGCCGCGAAATTGGAGGCGTTTGGTCTGCAAGGAGCCATCC
AGGAGGTATCGATGATCAAGGATCTCGATACTCGACGCATGAACTCAGGC
TCCTACTTGCGATCGACGTCAACGCGTATCGAAGTTGAGATCTCGATACT
CGACGCATGAACTCAGGCTCCTACTTGCGATCGACGTCAACGCGTATCGA
AGTTGA
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