mRNA_S-firma_M_contig9728.20721.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9728.20721.1
Unique NamemRNA_S-firma_M_contig9728.20721.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9728.20721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9728contigS-firma_M_contig9728:2656..3377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size490
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828810.7477605-CDS-S-firma_M_contig9728:2655..30471622828810.7477605-CDS-S-firma_M_contig9728:2655..3047Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9728 2656..3047 -
1697105176.5835283-CDS-S-firma_M_contig9728:2655..30471697105176.5835283-CDS-S-firma_M_contig9728:2655..3047Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9728 2656..3047 -
1622828810.759367-CDS-S-firma_M_contig9728:3280..33771622828810.759367-CDS-S-firma_M_contig9728:3280..3377Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9728 3281..3377 -
1697105176.5915432-CDS-S-firma_M_contig9728:3280..33771697105176.5915432-CDS-S-firma_M_contig9728:3280..3377Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9728 3281..3377 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9728.20721.1prot_S-firma_M_contig9728.20721.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9728 2656..3377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9728.20721.1

>prot_S-firma_M_contig9728.20721.1 ID=prot_S-firma_M_contig9728.20721.1|Name=mRNA_S-firma_M_contig9728.20721.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=163bp
GGGGGAKPNLVFSDMDLLPPVVGGGGGGAQGRGGNEGYGSTLQEQQQQPR
RTPAPPPPPPAAPAAPAAPAAPASFSSPSGGVSGGPSPAKEERSVERSTG
RSVDDGFGDIDAILGGSWDAGLGQQGQQESSSSSSSSSSGGEDSAGGDAA
EAVVGGGGGSSTR
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mRNA from alignment at S-firma_M_contig9728:2656..3377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9728.20721.1 ID=mRNA_S-firma_M_contig9728.20721.1|Name=mRNA_S-firma_M_contig9728.20721.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=722bp|location=Sequence derived from alignment at S-firma_M_contig9728:2656..3377- (Sphaerotrichia firma Sfir_13m male)
GGTGGTGGTGGTGGCGCGAAGCCGAACCTCGTTTTCTCGGACATGGACCT
GCTCCCGCCGGTGGTGGGAGGAGGAGGAGGAGGTGCGCAAGGACGAGGTA
CGCCAGTGGCAATATTGTACAATAATGTCCGGCCGCTGTTCGTTGTCCAT
GCGGTTCTGAAAAGGTTGTTTTTCATGGAGGCAAGATTCAACCAGGGCTG
TCCACGGTAGTGCGTGCATACACGCGCAGCCTGGGCACAAAGCACTTCAG
GGGGGCTGCGCTGCTGTAGACCCACCAATAACCCCCCCCCCGCCCCCCCC
CCCGTGTTTGCCTCTCGCGCCATTGACCAGGCGGCAACGAGGGCTACGGA
AGCACCCTCCAAGAGCAGCAGCAACAGCCCAGAAGAACACCCGCGCCACC
TCCTCCTCCTCCTGCTGCTCCTGCTGCTCCTGCTGCTCCTGCTGCTCCTG
CTTCTTTTTCTTCGCCTTCCGGAGGCGTTTCGGGGGGCCCGTCCCCGGCG
AAAGAAGAACGTTCCGTGGAACGTTCCACGGGACGTTCTGTGGACGACGG
GTTCGGCGACATCGACGCGATACTTGGCGGATCGTGGGACGCAGGCTTAG
GGCAGCAAGGCCAACAGGAAAGCAGCAGCAGCAGCAGTAGCAGCAGCAGC
GGGGGAGAAGATAGCGCAGGGGGTGACGCCGCGGAGGCCGTTGTCGGCGG
GGGGGGGGGTAGCAGTACTCGC
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Coding sequence (CDS) from alignment at S-firma_M_contig9728:2656..3377-

>mRNA_S-firma_M_contig9728.20721.1 ID=mRNA_S-firma_M_contig9728.20721.1|Name=mRNA_S-firma_M_contig9728.20721.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=978bp|location=Sequence derived from alignment at S-firma_M_contig9728:2656..3377- (Sphaerotrichia firma Sfir_13m male)
GGTGGTGGTGGTGGCGCGAAGCCGAACCTCGTTTTCTCGGACATGGACCT
GCTCCCGCCGGTGGTGGGAGGAGGAGGAGGAGGTGCGCAAGGACGAGGGT
GGTGGTGGTGGCGCGAAGCCGAACCTCGTTTTCTCGGACATGGACCTGCT
CCCGCCGGTGGTGGGAGGAGGAGGAGGAGGTGCGCAAGGACGAGGCGGCA
ACGAGGGCTACGGAAGCACCCTCCAAGAGCAGCAGCAACAGCCCAGAAGA
ACACCCGCGCCACCTCCTCCTCCTCCTGCTGCTCCTGCTGCTCCTGCTGC
TCCTGCTGCTCCTGCTTCTTTTTCTTCGCCTTCCGGAGGCGTTTCGGGGG
GCCCGTCCCCGGCGAAAGAAGAACGTTCCGTGGAACGTTCCACGGGACGT
TCTGTGGACGACGGGTTCGGCGACATCGACGCGATACTTGGCGGATCGTG
GGACGCAGGCTTAGGGCAGCAAGGCCAACAGGAAAGCAGCAGCAGCAGCA
GTAGCAGCAGCAGCGGGGGAGAAGATAGCGCAGGGGGTGACGCCGCGGAG
GCCGTTGTCGGCGGGGGGGGGGGTAGCAGTACTCGCGCGGCAACGAGGGC
TACGGAAGCACCCTCCAAGAGCAGCAGCAACAGCCCAGAAGAACACCCGC
GCCACCTCCTCCTCCTCCTGCTGCTCCTGCTGCTCCTGCTGCTCCTGCTG
CTCCTGCTTCTTTTTCTTCGCCTTCCGGAGGCGTTTCGGGGGGCCCGTCC
CCGGCGAAAGAAGAACGTTCCGTGGAACGTTCCACGGGACGTTCTGTGGA
CGACGGGTTCGGCGACATCGACGCGATACTTGGCGGATCGTGGGACGCAG
GCTTAGGGCAGCAAGGCCAACAGGAAAGCAGCAGCAGCAGCAGTAGCAGC
AGCAGCGGGGGAGAAGATAGCGCAGGGGGTGACGCCGCGGAGGCCGTTGT
CGGCGGGGGGGGGGGTAGCAGTACTCGC
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