mRNA_S-firma_M_contig9720.20717.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9720.20717.1
Unique NamemRNA_S-firma_M_contig9720.20717.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9720.20717.1 vs. uniprot
Match: D7G248_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G248_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.660e-35
Identity = 193/308 (62.66%), Postives = 200/308 (64.94%), Query Frame = 1 
Query:   73 KASAGSEWGSWALGKISETLASSALPSSGPVGSETAGNSITGGDASPVATASPPVSXXXXXXXX-----RHHTTALGLNLNGAGNVSASIPGXXXXXXXXXXXXXXXXXX-GKGRFDFVPGAGHGGDGWGEASSGGGEDEWQDAREIQPAXXXXXXXXXXXXXXXSRLSSILSLKKASPSKPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------ADAASRREALQKRXXXXXXXXXXSKAKAKPVVVAKKLMDAAPPDGWEDF 918
            ++SAGSEWGSWALGK+SETLASSALPSSGPVG+  AG                   XXXXXXXX     RHHTTALGLNLNGAGNVSASIPG                   GKG F +VPG     DG      GGGEDEWQDAR+IQPA               S+ SSILSLKKASP  PG          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     DAASRREALQKRXXXXXXXXXXSKAKAKPVVVAKKLMD APPDGWEDF
Sbjct:  558 RSSAGSEWGSWALGKLSETLASSALPSSGPVGA--AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVPRHHTTALGLNLNGAGNVSASIPGSVASAVAAGLPVGGGGGASGKGMFGYVPGEEGEDDG-----DGGGEDEWQDARDIQPAPGSTNGCTTNAAAG-SKPSSILSLKKASP--PGGVSAAPAAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGXAAGDAASRREALQKRXXXXXXXXXXSKAKAKPVVVAKKLMDIAPPDGWEDF 855
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9720.20717.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G248_ECTSI2.660e-3562.66Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9720contigS-firma_M_contig9720:139..3384 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue1.7e-35
Seed eggNOG ortholog2880.D7G248
Preferred nameCEX1
KEGG koko:K08876
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0031503,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071705,GO:0097064,GO:0097159,GO:1901363
EggNOG free text desc.protein phosphorylation
EggNOG OGsKOG1243@1,KOG1243@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Hectar predicted targeting categoryother localisation
Exons4
Model size1261
Cds size921
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9720.20717.1prot_S-firma_M_contig9720.20717.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9720 479..3384 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828810.5127091-UTR-S-firma_M_contig9720:138..4781622828810.5127091-UTR-S-firma_M_contig9720:138..478Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9720 139..478 -
1697105176.4941633-UTR-S-firma_M_contig9720:138..4781697105176.4941633-UTR-S-firma_M_contig9720:138..478Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9720 139..478 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828810.524514-CDS-S-firma_M_contig9720:478..5751622828810.524514-CDS-S-firma_M_contig9720:478..575Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 479..575 -
1697105176.504826-CDS-S-firma_M_contig9720:478..5751697105176.504826-CDS-S-firma_M_contig9720:478..575Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 479..575 -
1622828810.5402617-CDS-S-firma_M_contig9720:1398..17421622828810.5402617-CDS-S-firma_M_contig9720:1398..1742Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 1399..1742 -
1697105176.5132608-CDS-S-firma_M_contig9720:1398..17421697105176.5132608-CDS-S-firma_M_contig9720:1398..1742Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 1399..1742 -
1622828810.5544858-CDS-S-firma_M_contig9720:2086..24651622828810.5544858-CDS-S-firma_M_contig9720:2086..2465Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 2087..2465 -
1697105176.5214684-CDS-S-firma_M_contig9720:2086..24651697105176.5214684-CDS-S-firma_M_contig9720:2086..2465Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 2087..2465 -
1622828810.5695307-CDS-S-firma_M_contig9720:3283..33841622828810.5695307-CDS-S-firma_M_contig9720:3283..3384Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 3284..3384 -
1697105176.5294294-CDS-S-firma_M_contig9720:3283..33841697105176.5294294-CDS-S-firma_M_contig9720:3283..3384Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9720 3284..3384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9720.20717.1

>prot_S-firma_M_contig9720.20717.1 ID=prot_S-firma_M_contig9720.20717.1|Name=mRNA_S-firma_M_contig9720.20717.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=307bp
IGNGGGGSGAAAGGAAAAGNTGSKKASAGSEWGSWALGKISETLASSALP
SSGPVGSETAGNSITGGDASPVATASPPVSSSSSAVPPRHHTTALGLNLN
GAGNVSASIPGSVAAAVAAGLPVGGGVSGGKGRFDFVPGAGHGGDGWGEA
SSGGGEDEWQDAREIQPAPGSGTGTGTANGGPGSRLSSILSLKKASPSKP
GGAGGGGKGEGWDWDGLDGVGDDAPPSPTPPTRAVSLGLGGGTAKAGAGA
GGGGGAAADAASRREALQKRREARRAQRESSKAKAKPVVVAKKLMDAAPP
DGWEDF*
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mRNA from alignment at S-firma_M_contig9720:139..3384-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9720.20717.1 ID=mRNA_S-firma_M_contig9720.20717.1|Name=mRNA_S-firma_M_contig9720.20717.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3246bp|location=Sequence derived from alignment at S-firma_M_contig9720:139..3384- (Sphaerotrichia firma Sfir_13m male)
ATCGGCAACGGCGGGGGAGGGAGCGGGGCGGCGGCGGGGGGAGCGGCGGC
AGCAGGAAACACCGGGTCGAAGAAGGCTTCTGCTGGATCCGAATGGGGAA
GGTATGATGCGCCTCGGCGCGGCGAGGCTCTTGGTGTTGCGCTGCCTGCA
CCGCTGCGGGGGTGGGATGGGGGGGGGGTAGTGTCTTTGTGTTCGTTGTT
TGTGGTGTGGCGCTTTCTCTCTTGATTGAGACGGATTTGTCGTTCGTTGT
TGTTTGTTTGTGGTGGTGCTCTCTCTTGGGCGACGGGGAGGTTTTTGAAG
TTCGCCGCTGTGGCATTGTGTTCGTTCTCTCTTGGGTGAAGGGGGGTATT
TCTTGTTTATTTTTCTTGGCGGGGTGACTCATCTCCCTTGTTTGCTGCTA
TCATACATACGCCCCGAGGTGGGCTTTGCCGCGGAGTCATGTAGTGCCCC
CGCTGGTGAGCACCGCTACTGTAGTACCCCTTAACCAGTACCCCAACCAG
CACCTGCCCCCCAATGGCACCAATGGCACCAATAGTACCAGTGGCACCAA
TGGCGCCAATAGCACCAATGGCACCAATGGCACCAATAGCACCAATGGCA
CCAATAGCACCAATAGCACCAATAGCACCAATGGCACCAATGGCGCCTAT
AGCACCAATGGCACCAATGGCACCAATAGCACCAATGGCACCAATGGCAC
CAATGGCAAGGCAACGGAAAGCCGAGACGGCCTAACCCGCTCCACGAACG
AACGAACGAACGAATGAAGTCATCGGCACACAAACCACAAACCGCTAAAC
ACAAAACAGAGTAGTTTCCCAAATCTCTTCAAGGAGGCGCGCAACAAAAC
CGCTCCGTCGCCGCCACGAGCCAACCCAACCCAACCCAACCCAACCCAAC
CCAATCCAAAAAACCGCAGCTGGGCGCTGGGAAAGATCTCGGAGACTCTG
GCTAGCTCAGCCCTGCCGAGCAGCGGCCCCGTGGGGTCCGAAACCGCCGG
CAACAGCATCACCGGGGGTGACGCCTCTCCGGTAGCCACGGCGTCCCCCC
CCGTGTCCTCGTCCTCGTCGGCGGTGCCCCCGAGACATCACACCACGGCG
CTCGGCCTCAACCTCAACGGCGCCGGGAACGTGTCCGCGAGCATACCGGG
GTCGGTGGCGGCGGCGGTGGCGGCGGGTCTCCCCGTTGGCGGAGGCGTAT
CGGGTGGCAAGGGGAGGTTTGACTTTGTCCCCGGGGCGGGGCACGGGGGG
GATGGGTGGGGAGAGGCCTCCAGCGGCGGCGGAGAGGACGAGTGGCAGGT
GTGTAGTTGGGTTTGGCGGTGTTGGTGTTGGGTTTCGTGGCCCCGCTCTT
TCAAGCACGCATCCCCCAGGCCAGGACACGTTCAAGAGAGTTTGCACAAC
AATGCGTTTCCTGCGTGCGATGCGGGGGCAGCAGCAGTTAACGAAGAACC
CTGTCTCCGGCACACGCGCGGTGTGCGTCGGCGCGCTGCTGCTGCGTCTG
GTCGACAGCGGTCGGTACTACCAAATACGAAGATGACGCCAACAAACACC
CCCCGCCAAGCTTTTGCAGCACCCTTTCCTTCTCACTGATGATGCCGGCT
GGCTGCCCCCCCCCCCCACCCCCGCCGACGCAATCAAACCAGGACGCGAG
AGAAATCCAGCCCGCACCGGGCTCCGGCACCGGCACCGGCACCGCCAACG
GCGGCCCCGGCTCGAGGCTCTCCTCCATCCTCAGCCTGAAGAAGGCCAGC
CCTTCCAAACCCGGCGGAGCTGGCGGTGGCGGCAAGGGGGAAGGGTGGGA
CTGGGACGGCCTCGACGGAGTAGGGGACGACGCGCCGCCGTCCCCTACTC
CTCCGACGCGTGCCGTGTCGTTGGGGCTGGGCGGGGGCACCGCGAAGGCG
GGAGCGGGCGCCGGGGGGGGTGGGGGGGCCGCGGCGGACGCCGCTAGCCG
GCGGGAAGCTCTCCAGAAGAGAAGGGAGGCCCGACGGTGCGTGTGTGTGT
TTGTGTGTTGTTTTCTGTGTTTGTGTGTTGTTTTCTGTGTGTGTGTGTTT
GTGTGTGTGTGATGTTTTCTGTGTGTGTGTGTGTGTTTGTGTGTGTGTTG
TTTTCGTAGTTAGAATCGCTCGCGCTAACCGGTTGACCAGACCAAATGAA
AAGACGTCAGCCTTCAGCGGGGTATACACGCAAGTATGATACGCTTTATA
AGTGTTGGGACTCCTTTTTCTCTAAGGGTTCCGCAAGAGAAACTCGACTG
AAATCCACAGGCGCGGTAGGTGCGGCTATCTCTGCTAAGCTAAGCCTATC
TCCGACATGAGTGTGTGTGTGTGTGTCTGCGTTCGTTGTTGTTGTGGCCT
CTATTGCGGTGTGTGTGTACGCGCGGGTGGGTGCGTGCGTGTGCGTTTCG
TTCATGTGTTCATGTGTTGGGTTTAGGTTTAGGTTGCTTTGAACGACGGC
TCGCTCCTCCTGCATAGACTATCTATGCTCCCTCTCTCTCTCTCTCTCTC
TGCCCACTACGGCATCCCTCCCGTTCGGCGGGCATTGGCATGGTTTGTTT
GGTTGTGTCCGTGCGATGGGTTTGTTTCGTGGTTACAGCTTCCCCCCCCC
CGTCCAGCCGTGAACTAGCCTAGTTCAGCTTTGCACCCTGGGAAGGGGTC
TTGCTGTGTGTGTGTGTGTGTGTGTTTTTGTTTCGTTGAGTTTCTTTCCC
GCCATCTATCTCAAGCGTCCCTCCCTCGTGCGATCTGATCCTATTTGGCC
CTGCCCACCGCCCCTCCCAAATGTGCGGCAATGATCGGCGTGGGTACATA
CCCGAGCAGCGCTCAGCGCGAGAGCAGCAAGGCAAAGGCCAAGCCGGTGG
TGGTCGCGAAGAAGCTCATGGATGCTGCCCCGCCGGATGGCTGGGAAGAC
TTCTGAGCCCCGAGGGAGACGGCTCCCTTTCTGTGTGCTCTTTTTTATAG
TTGTGTTTTTTAGGCCGGGGTCGCGCGCGATTTGCTGCCTCCTCTTGGCG
GCTTCTCGGTCGTCGAGCCCGAAGTGATGGTACCCCTGTGCTTTCTCCGC
TCGCTTTTGTTGATTTGTTGATGGAGCAAGGGCCAAGCCACGTGGGGCGA
AGCGGCGGCGGCGTTTGTGTTTGACGCAGTTTTTGTTTTCAGTACCAATC
CTCCGCGCCCGCCTCTGTCTCCGACGTAGGTATTGTGCCTCTTGGTGGAC
GGAGAAAATTTTTGACTCAGTGTGACCGCCGTTGATGTTGTGGGGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9720:139..3384-

>mRNA_S-firma_M_contig9720.20717.1 ID=mRNA_S-firma_M_contig9720.20717.1|Name=mRNA_S-firma_M_contig9720.20717.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1842bp|location=Sequence derived from alignment at S-firma_M_contig9720:139..3384- (Sphaerotrichia firma Sfir_13m male)
ATCGGCAACGGCGGGGGAGGGAGCGGGGCGGCGGCGGGGGGAGCGGCGGC
AGCAGGAAACACCGGGTCGAAGAAGGCTTCTGCTGGATCCGAATGGGGAA
GATCGGCAACGGCGGGGGAGGGAGCGGGGCGGCGGCGGGGGGAGCGGCGG
CAGCAGGAAACACCGGGTCGAAGAAGGCTTCTGCTGGATCCGAATGGGGA
AGCTGGGCGCTGGGAAAGATCTCGGAGACTCTGGCTAGCTCAGCCCTGCC
GAGCAGCGGCCCCGTGGGGTCCGAAACCGCCGGCAACAGCATCACCGGGG
GTGACGCCTCTCCGGTAGCCACGGCGTCCCCCCCCGTGTCCTCGTCCTCG
TCGGCGGTGCCCCCGAGACATCACACCACGGCGCTCGGCCTCAACCTCAA
CGGCGCCGGGAACGTGTCCGCGAGCATACCGGGGTCGGTGGCGGCGGCGG
TGGCGGCGGGTCTCCCCGTTGGCGGAGGCGTATCGGGTGGCAAGGGGAGG
TTTGACTTTGTCCCCGGGGCGGGGCACGGGGGGGATGGGTGGGGAGAGGC
CTCCAGCGGCGGCGGAGAGGACGAGTGGCAGCTGGGCGCTGGGAAAGATC
TCGGAGACTCTGGCTAGCTCAGCCCTGCCGAGCAGCGGCCCCGTGGGGTC
CGAAACCGCCGGCAACAGCATCACCGGGGGTGACGCCTCTCCGGTAGCCA
CGGCGTCCCCCCCCGTGTCCTCGTCCTCGTCGGCGGTGCCCCCGAGACAT
CACACCACGGCGCTCGGCCTCAACCTCAACGGCGCCGGGAACGTGTCCGC
GAGCATACCGGGGTCGGTGGCGGCGGCGGTGGCGGCGGGTCTCCCCGTTG
GCGGAGGCGTATCGGGTGGCAAGGGGAGGTTTGACTTTGTCCCCGGGGCG
GGGCACGGGGGGGATGGGTGGGGAGAGGCCTCCAGCGGCGGCGGAGAGGA
CGAGTGGCAGGACGCGAGAGAAATCCAGCCCGCACCGGGCTCCGGCACCG
GCACCGGCACCGCCAACGGCGGCCCCGGCTCGAGGCTCTCCTCCATCCTC
AGCCTGAAGAAGGCCAGCCCTTCCAAACCCGGCGGAGCTGGCGGTGGCGG
CAAGGGGGAAGGGTGGGACTGGGACGGCCTCGACGGAGTAGGGGACGACG
CGCCGCCGTCCCCTACTCCTCCGACGCGTGCCGTGTCGTTGGGGCTGGGC
GGGGGCACCGCGAAGGCGGGAGCGGGCGCCGGGGGGGGTGGGGGGGCCGC
GGCGGACGCCGCTAGCCGGCGGGAAGCTCTCCAGAAGAGAAGGGAGGCCC
GACGGACGCGAGAGAAATCCAGCCCGCACCGGGCTCCGGCACCGGCACCG
GCACCGCCAACGGCGGCCCCGGCTCGAGGCTCTCCTCCATCCTCAGCCTG
AAGAAGGCCAGCCCTTCCAAACCCGGCGGAGCTGGCGGTGGCGGCAAGGG
GGAAGGGTGGGACTGGGACGGCCTCGACGGAGTAGGGGACGACGCGCCGC
CGTCCCCTACTCCTCCGACGCGTGCCGTGTCGTTGGGGCTGGGCGGGGGC
ACCGCGAAGGCGGGAGCGGGCGCCGGGGGGGGTGGGGGGGCCGCGGCGGA
CGCCGCTAGCCGGCGGGAAGCTCTCCAGAAGAGAAGGGAGGCCCGACGCG
CTCAGCGCGAGAGCAGCAAGGCAAAGGCCAAGCCGGTGGTGGTCGCGAAG
AAGCTCATGGATGCTGCCCCGCCGGATGGCTGGGAAGACTTCTGACGCTC
AGCGCGAGAGCAGCAAGGCAAAGGCCAAGCCGGTGGTGGTCGCGAAGAAG
CTCATGGATGCTGCCCCGCCGGATGGCTGGGAAGACTTCTGA
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