mRNA_S-firma_M_contig9717.20713.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9717.20713.1
Unique NamemRNA_S-firma_M_contig9717.20713.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9717.20713.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 5.930e-121
Identity = 178/320 (55.62%), Postives = 226/320 (70.62%), Query Frame = 2 
Query:    2 QLRGEPKSGTGFMYEWAVNALMTTCAELNRLYGQKACSVTWSGPKSRGLQRPVSRTIHITHMREVLLVFEPDKKSGTNVA----RAPCKCENVDRVSVRISSLLKHNLPVPSDCPWQHVDGVTGEGRGCTTVDGRGVRNHKDTAKCVQDTPCDVVDNRTQMLILRDPRAVVVSMYYYGKKNPGMSGQPRPGESVEKFALRMLPTICGFVHLRYLLLSEVMPDKSVECIYEESLLCPFGWHRRMLSSVGLAPPWTVLMNATDTALRNDFGFMTKGVDTHPGGMPVGPTRSFEDEISAEAKARLDDMCRVWLPPVLLKKFGI 949
            QLRGEPKSGT FM+EWAVNALM TC EL RLYG+  C+  W G  SR  Q+PVS    +  M+EV  VF+P+++ G + A     +PC C  VD+VS+ +SSL KH+LPVP  CPWQHVD VT E +GCTTV+GR V N+ DT +C+Q  PC +VD+R QMLILRDPRAV VS +++ K +     +    ESV+ F LRMLPTIC F+HLRYL+L E +  K+VE  Y+ESL  P  WH+R LSSVGL PP  V++ AT+T+LR ++GF  KGVD HPGG      R++EDEIS +   +L+ +CR WLPPVLL+KFGI
Sbjct:  103 QLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGI 422
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BLAST of mRNA_S-firma_M_contig9717.20713.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.070e-45
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = 2 
Query:  563 ESVEKFALRMLPTICGFVHLRYLLLSEVMPDKSVECIYEESLLCPFGWHRRMLSSVGLAPPWTVLMNATDTALRNDFGFMTKGVDTHPGGMPVGPTRSFEDEISAEAKARLDDMCRVWLPPVLLKKFGI 949
            ESV+ F LRMLPTIC F+HLRYL+L E +  K+VE  Y+ESL  P  WH+R LSSVGL PP  V++ AT+T+LR ++GF+ KGVD HPGG      R++EDEIS E   +L+D+CR WLPPVLL+KFGI
Sbjct:   27 ESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGI 155
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BLAST of mRNA_S-firma_M_contig9717.20713.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.500e-26
Identity = 65/170 (38.24%), Postives = 93/170 (54.71%), Query Frame = 2 
Query:  449 VVDNRTQMLILRDPRAVVVSMYYYGKKNPGM-SGQPRPGESVEKFALRMLPTICGFVHLRYLLLSEVMPDKSVECIYEESLLCPFGWHRRMLSSVGLAPP--WTVLMNATDTALRNDFGFMTKGVDTHPGGMPVGPTRSFEDEISAEAKARLDDMCRVWLPPVLLKKFGI 949
            ++D+  Q  +LRDPRAV VS Y+Y K +P   S     G+S+++  L +LP +C F  +R+LL    + DKS    YE+++  P GWH R  S  G A P  W   ++AT    +          D HPGG  V   R++EDEIS   +  +D + R WLP VLL++ GI
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVKR-----DPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGI 189
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BLAST of mRNA_S-firma_M_contig9717.20713.1 vs. uniprot
Match: A0A6H5KPP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.490e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:    2 QLRG-------EPKSGTGFMYEWAVNALMTTCAELNRLYGQKACSVTWSGPKSRGLQRPVSRTIHITHMREVLLVFEPDKKSGTNVA----RAPCKCENVDR 274
            QLRG       EPKSGTGFM+EWAVNALM TC EL RLYG+  C+V    P SR   +PV+    +  M+EV+ V  P+++ G + A     +PC C  VD+
Sbjct:  101 QLRGASRIQYQEPKSGTGFMFEWAVNALMVTCEELGRLYGEGTCTVRGRRPFSRRKPKPVTPETALDDMKEVIFVINPNRQDGRSSAGGPSASPCPCSTVDK 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9717.20713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJE4_ECTSI5.930e-12155.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP89_9PHAE1.070e-4559.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE2.500e-2638.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPP2_9PHAE2.490e-1847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9717contigS-firma_M_contig9717:1853..3586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1243
Cds size951
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9717.20713.1prot_S-firma_M_contig9717.20713.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9717 1890..3331 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828809.7336195-UTR-S-firma_M_contig9717:1852..18891622828809.7336195-UTR-S-firma_M_contig9717:1852..1889Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9717 1853..1889 +
1697105176.073781-UTR-S-firma_M_contig9717:1852..18891697105176.073781-UTR-S-firma_M_contig9717:1852..1889Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9717 1853..1889 +
1622828809.7725215-UTR-S-firma_M_contig9717:3331..35861622828809.7725215-UTR-S-firma_M_contig9717:3331..3586Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9717 3332..3586 +
1697105176.097606-UTR-S-firma_M_contig9717:3331..35861697105176.097606-UTR-S-firma_M_contig9717:3331..3586Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9717 3332..3586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828809.7471268-CDS-S-firma_M_contig9717:1889..21251622828809.7471268-CDS-S-firma_M_contig9717:1889..2125Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9717 1890..2125 +
1697105176.0818746-CDS-S-firma_M_contig9717:1889..21251697105176.0818746-CDS-S-firma_M_contig9717:1889..2125Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9717 1890..2125 +
1622828809.760736-CDS-S-firma_M_contig9717:2616..33311622828809.760736-CDS-S-firma_M_contig9717:2616..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9717 2617..3331 +
1697105176.0897098-CDS-S-firma_M_contig9717:2616..33311697105176.0897098-CDS-S-firma_M_contig9717:2616..3331Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9717 2617..3331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9717.20713.1

>prot_S-firma_M_contig9717.20713.1 ID=prot_S-firma_M_contig9717.20713.1|Name=mRNA_S-firma_M_contig9717.20713.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=317bp
MYEWAVNALMTTCAELNRLYGQKACSVTWSGPKSRGLQRPVSRTIHITHM
REVLLVFEPDKKSGTNVARAPCKCENVDRVSVRISSLLKHNLPVPSDCPW
QHVDGVTGEGRGCTTVDGRGVRNHKDTAKCVQDTPCDVVDNRTQMLILRD
PRAVVVSMYYYGKKNPGMSGQPRPGESVEKFALRMLPTICGFVHLRYLLL
SEVMPDKSVECIYEESLLCPFGWHRRMLSSVGLAPPWTVLMNATDTALRN
DFGFMTKGVDTHPGGMPVGPTRSFEDEISAEAKARLDDMCRVWLPPVLLK
KFGIAPEEDRSPTVVA*
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mRNA from alignment at S-firma_M_contig9717:1853..3586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9717.20713.1 ID=mRNA_S-firma_M_contig9717.20713.1|Name=mRNA_S-firma_M_contig9717.20713.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1734bp|location=Sequence derived from alignment at S-firma_M_contig9717:1853..3586+ (Sphaerotrichia firma Sfir_13m male)
GCAGCTCCGTGGGGAGCCGAAAAGTGGCACTGGCTTCATGTACGAGTGGG
CGGTCAACGCGTTGATGACCACCTGTGCGGAGTTGAACCGGCTTTACGGC
CAAAAGGCTTGCTCCGTGACGTGGAGCGGGCCCAAATCTAGAGGGTTACA
ACGCCCAGTATCCAGGACAATTCACATCACCCACATGAGAGAGGTGTTGC
TCGTGTTCGAACCGGACAAGAAGAGCGGGACGAATGTCGCCCGTGCCCCC
TGCAAATGTGAAAACGTGGACCGGTGAGAAGGTGTCGACGAGGAGTCCAA
AGAAAAACAACCACTTCGAAGTATGATACGAAATAAATACGGAGAATGGT
TTTCTGGGTGCAAAAGGTGACCTGATATTATCCGTCTGCCCGACCGAAAT
TCTGTGGCTGTGCATCAGTCACGCTTCCTGCGCTTCGAATTGATGTTCCC
CGAAACGATGATACCCGTAAATTTGCTCGAACAACAAATTGCGTCACAGG
ACGGAGGGTGGGACGGTCGTGAAAGTATAGCCTGTGCTAGTGGTTGTTGT
CCTTTTCGGTCGACTCGAGCCAATTCAGTTTCAGCACGTGCCCCATATCC
GGCGAGAAGCAGACCAGGTGAAACGGTTTGCTGTTCAACGGACCCGAGAG
AGGCACAGACAGCTCCACAGACAACTCAAACCACGCACACCCTTGAACCT
CTGAACGTACCCCCGCCACCCTCGTATCTATTTCACCACTCACTGTCTTC
CTTGCCGGTGCCAGAGTTTCCGTCAGAATATCGAGCCTTTTGAAGCACAA
CTTGCCAGTACCCAGCGACTGCCCGTGGCAGCACGTCGACGGCGTCACCG
GAGAGGGAAGAGGCTGTACGACCGTGGATGGCCGGGGAGTGCGAAACCAC
AAGGACACCGCGAAGTGCGTCCAAGATACTCCGTGCGACGTTGTTGATAA
CCGCACTCAGATGTTGATACTTCGTGATCCTCGAGCCGTTGTTGTCAGCA
TGTACTATTATGGGAAGAAGAACCCTGGGATGTCAGGGCAGCCTAGACCC
GGCGAAAGCGTTGAGAAATTTGCACTGAGAATGTTGCCGACGATTTGCGG
CTTTGTCCACCTAAGGTACCTACTTTTATCAGAGGTGATGCCCGACAAAT
CTGTTGAGTGCATATACGAAGAGAGCCTACTATGTCCGTTCGGGTGGCAT
CGACGAATGTTGTCTTCCGTTGGGTTAGCCCCGCCGTGGACCGTGTTAAT
GAATGCGACCGACACTGCGCTTAGAAACGATTTCGGGTTCATGACAAAGG
GAGTAGACACCCATCCTGGAGGGATGCCGGTAGGGCCGACCCGATCGTTT
GAGGACGAGATTTCAGCTGAAGCGAAAGCCCGACTAGACGACATGTGCCG
AGTCTGGCTCCCCCCTGTTCTGTTGAAAAAGTTCGGGATTGCACCCGAAG
AAGATAGGAGCCCAACAGTTGTTGCTTAAGGGGCTGGAGTTCGACCTGAC
GTTTCCTGTATATAGCTGGCGGTCTCTTCGTCCGTACATGTGTATGTCTT
TCGGAAGATTCCAAGAACAACATTACCTTGCCGCTGGGATTTATTTCATT
TATTTGAGTGAGTTGTTAGGTGGTACTAGGAACTAGATACTGGTGGGATC
TTGGGGGGTTACGTGAATGATTTGGGGGCTTCATGTGTACCTAGTTGGTA
TGTGCGGACACCGAACCCCCGGTGCAGAGCAGGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9717:1853..3586+

>mRNA_S-firma_M_contig9717.20713.1 ID=mRNA_S-firma_M_contig9717.20713.1|Name=mRNA_S-firma_M_contig9717.20713.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1902bp|location=Sequence derived from alignment at S-firma_M_contig9717:1853..3586+ (Sphaerotrichia firma Sfir_13m male)
ATGTACGAGTGGGCGGTCAACGCGTTGATGACCACCTGTGCGGAGTTGAA
CCGGCTTTACGGCCAAAAGGCTTGCTCCGTGACGTGGAGCGGGCCCAAAT
CTAGAGGGTTACAACGCCCAGTATCCAGGACAATTCACATCACCCACATG
AGAGAGGTGTTGCTCGTGTTCGAACCGGACAAGAAGAGCGGGACGAATGT
CGCCCGTGCCCCCTGCAAATGTGAAAACGTGGACCGATGTACGAGTGGGC
GGTCAACGCGTTGATGACCACCTGTGCGGAGTTGAACCGGCTTTACGGCC
AAAAGGCTTGCTCCGTGACGTGGAGCGGGCCCAAATCTAGAGGGTTACAA
CGCCCAGTATCCAGGACAATTCACATCACCCACATGAGAGAGGTGTTGCT
CGTGTTCGAACCGGACAAGAAGAGCGGGACGAATGTCGCCCGTGCCCCCT
GCAAATGTGAAAACGTGGACCGAGTTTCCGTCAGAATATCGAGCCTTTTG
AAGCACAACTTGCCAGTACCCAGCGACTGCCCGTGGCAGCACGTCGACGG
CGTCACCGGAGAGGGAAGAGGCTGTACGACCGTGGATGGCCGGGGAGTGC
GAAACCACAAGGACACCGCGAAGTGCGTCCAAGATACTCCGTGCGACGTT
GTTGATAACCGCACTCAGATGTTGATACTTCGTGATCCTCGAGCCGTTGT
TGTCAGCATGTACTATTATGGGAAGAAGAACCCTGGGATGTCAGGGCAGC
CTAGACCCGGCGAAAGCGTTGAGAAATTTGCACTGAGAATGTTGCCGACG
ATTTGCGGCTTTGTCCACCTAAGGTACCTACTTTTATCAGAGGTGATGCC
CGACAAATCTGTTGAGTGCATATACGAAGAGAGCCTACTATGTCCGTTCG
GGTGGCATCGACGAATGTTGTCTTCCGTTGGGTTAGCCCCGCCGTGGACC
GTGTTAATGAATGCGACCGACACTGCGCTTAGAAACGATTTCGGGTTCAT
GACAAAGGGAGTAGACACCCATCCTGGAGGGATGCCGGTAGGGCCGACCC
GATCGTTTGAGGACGAGATTTCAGCTGAAGCGAAAGCCCGACTAGACGAC
ATGTGCCGAGTCTGGCTCCCCCCTGTTCTGTTGAAAAAGTTCGGGATTGC
ACCCGAAGAAGATAGGAGCCCAACAGTTGTTGCTTAAAGTTTCCGTCAGA
ATATCGAGCCTTTTGAAGCACAACTTGCCAGTACCCAGCGACTGCCCGTG
GCAGCACGTCGACGGCGTCACCGGAGAGGGAAGAGGCTGTACGACCGTGG
ATGGCCGGGGAGTGCGAAACCACAAGGACACCGCGAAGTGCGTCCAAGAT
ACTCCGTGCGACGTTGTTGATAACCGCACTCAGATGTTGATACTTCGTGA
TCCTCGAGCCGTTGTTGTCAGCATGTACTATTATGGGAAGAAGAACCCTG
GGATGTCAGGGCAGCCTAGACCCGGCGAAAGCGTTGAGAAATTTGCACTG
AGAATGTTGCCGACGATTTGCGGCTTTGTCCACCTAAGGTACCTACTTTT
ATCAGAGGTGATGCCCGACAAATCTGTTGAGTGCATATACGAAGAGAGCC
TACTATGTCCGTTCGGGTGGCATCGACGAATGTTGTCTTCCGTTGGGTTA
GCCCCGCCGTGGACCGTGTTAATGAATGCGACCGACACTGCGCTTAGAAA
CGATTTCGGGTTCATGACAAAGGGAGTAGACACCCATCCTGGAGGGATGC
CGGTAGGGCCGACCCGATCGTTTGAGGACGAGATTTCAGCTGAAGCGAAA
GCCCGACTAGACGACATGTGCCGAGTCTGGCTCCCCCCTGTTCTGTTGAA
AAAGTTCGGGATTGCACCCGAAGAAGATAGGAGCCCAACAGTTGTTGCTT
AA
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