mRNA_S-firma_M_contig97.20692.1 (mRNA) Sphaerotrichia firma Sfir_13m male
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Overview
Homology
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A6H5KB20_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB20_9PHAE) HSP 1 Score: 232 bits (592), Expect = 1.030e-65 Identity = 122/141 (86.52%), Postives = 131/141 (92.91%), Query Frame = 1
Query: 1 MDGDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVDRRL 423
M+GDRVVKRAS RAADG FRDRSLSQLSGGQWRRASL+LELAF+ELARQRGRFSCNLLVLDEVLSQLDS GRERVA+MLRALTHGR+A +S GPT AMYSTILVILQDLP++ELQESFDAID+VVKHRDSSSVVV RL
Sbjct: 1511 MEGDRVVKRASVRAADGRFRDRSLSQLSGGQWRRASLALELAFIELARQRGRFSCNLLVLDEVLSQLDSYGRERVASMLRALTHGRHAGKESNFGPTHAMYSTILVILQDLPSEELQESFDAIDQVVKHRDSSSVVVGPRL 1651
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: D7FQ73_ECTSI (DNA double-strand break repair rad50 ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ73_ECTSI) HSP 1 Score: 231 bits (588), Expect = 3.540e-65 Identity = 122/141 (86.52%), Postives = 130/141 (92.20%), Query Frame = 1
Query: 1 MDGDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVDRRL 423
M+GDRVVKRAS RAADG FRDRSLSQLSGGQWRRASL+LELAF+ELARQRGRFSCNLLVLDEVLSQLDS GRERVA+MLRALTHGRNA +S GPT AMYSTILVILQDLP++ELQESFDAID+VVK RDSSSVVV RL
Sbjct: 1499 MEGDRVVKRASVRAADGRFRDRSLSQLSGGQWRRASLALELAFIELARQRGRFSCNLLVLDEVLSQLDSYGRERVASMLRALTHGRNAGKESDFGPTHAMYSTILVILQDLPSEELQESFDAIDQVVKQRDSSSVVVGPRL 1639
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A7S1GJC3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJC3_CYCTE) HSP 1 Score: 124 bits (311), Expect = 1.020e-30 Identity = 72/136 (52.94%), Postives = 93/136 (68.38%), Query Frame = 1
Query: 7 GDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVD 414
GDR+ ++A RA DG + +R LS LSGGQWRR S++L L FV+L +RG+ +L+VLDE L+ LD GR V ++L+AL RN DS S+ STI++ILQDL A+EL+ESFD IDEVVK S VVVD
Sbjct: 102 GDRISRKAHIRAPDGSYTERPLSSLSGGQWRRFSIALNLGFVDLVARRGQMRPSLMVLDEPLTHLDRSGRSSVGSLLKALL--RNDDSLSHRIGKGITASTIMLILQDLSAEELEESFDHIDEVVKLGGCSHVVVD 235
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A4D9DAR7_9STRA (Metallophos domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAR7_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.330e-30 Identity = 74/150 (49.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query: 1 MDGDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYS---------TILVILQDLPADELQESFDAIDEVVKHRDSSSVVVDRRL 423
++G+R+ K R DG F DR+LS LSGGQWRRASL+ LAF EL+R R R CNL+VLDEVL+ LD GR RV +LRA+ D ++ P + T +VILQD A EL+++FD+IDEVVK D S VV+D RL
Sbjct: 1201 LEGERISKEVKVRGGDGVFHDRTLSHLSGGQWRRASLAALLAFRELSRLRSRVDCNLIVLDEVLNHLDGAGRARVGKLLRAMVQ-TEGDGQEHSTPARIQMGCLSARPGLQTAIVILQDSAAIELEDTFDSIDEVVKEGDVSRVVLDERL 1349
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A836CHZ6_9STRA (Metallophos domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ6_9STRA) HSP 1 Score: 129 bits (325), Expect = 4.630e-30 Identity = 86/183 (46.99%), Postives = 103/183 (56.28%), Query Frame = 1
Query: 1 MDGDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRAL------------THG--------------RNADSDSYAGPTQAM------------------------YSTILVILQDLPADELQESFDAIDEVVKHRDSS 399
+DG+RV+KRA +DG R+RSLSQLSGGQWRR SLSLELAF ELARQR +CN++VLDEVLSQLD+ GR RVA +LR L TH RN S + A YST+LVILQDLPA+++ +SFDA+DEVVK D S
Sbjct: 1527 LDGERVIKRAEVIGSDGQRRERSLSQLSGGQWRRVSLSLELAFAELARQRCGLACNVVVLDEVLSQLDANGRARVAQLLRHLSAEMHYRGLLHPTHTDIGHPIHRLCFLLIRNGGHSSRRLVSSAAAQLDANGRARVAHLLRRLVAADGGYSTVLVILQDLPAEQIIDSFDAVDEVVKRGDRS 1709
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A7S4JM63_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JM63_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.430e-28 Identity = 68/136 (50.00%), Postives = 93/136 (68.38%), Query Frame = 1
Query: 7 GDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVD 414
GDR+ + + R ADG +++R+LS LSGGQWRR SL+L L F +L +RGR +LLVLDE L+ LD+ GR V +LR + + A+ Y G + STIL+ILQDL A+EL+ESFD+IDEV+K + S V V+
Sbjct: 246 GDRIARTVAVRGADGTWQERTLSSLSGGQWRRCSLALSLGFSDLVARRGRLRPSLLVLDEPLTHLDASGRAHVGMILRKMISNQPAE---YGGRLSEV-STILIILQDLAAEELEESFDSIDEVIKEKGRSIVCVE 377
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A8J9SJ08_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SJ08_PHATR) HSP 1 Score: 120 bits (300), Expect = 6.010e-27 Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 7 GDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVDRRL 423
GDR+ +RA R+ DG + +R L+ LSGGQWRR SL+L L + +L +RGRF +L ++DE L+ LD GR V + R L + P STI+VILQDL A+EL E+FD IDEVVK + +S V VD L
Sbjct: 486 GDRISRRAYVRSPDGAYHERPLASLSGGQWRRCSLALNLGYADLVARRGRFRSSLYIMDEPLTHLDRSGRADVGRVFRKLLRRSTTSGEGGLAP-----STIIVILQDLAAEELGEAFDCIDEVVKFQGTSQVFVDEEL 619
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: B7FXD6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXD6_PHATC) HSP 1 Score: 120 bits (300), Expect = 9.120e-27 Identity = 65/139 (46.76%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 7 GDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAMYSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVDRRL 423
GDR+ +RA R+ DG + +R L+ LSGGQWRR SL+L L + +L +RGRF +L ++DE L+ LD GR V + R L + P STI+VILQDL A+EL E+FD IDEVVK + +S V VD L
Sbjct: 1202 GDRISRRAYVRSPDGAYHERPLASLSGGQWRRCSLALNLGYADLVARRGRFRSSLYIMDEPLTHLDRSGRADVGRVFRKLLRRSTTSGEGGLAP-----STIIVILQDLAAEELGEAFDCIDEVVKFQGTSQVFVDEEL 1335
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A7S4R4E5_9STRA (Hypothetical protein n=5 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R4E5_9STRA) HSP 1 Score: 118 bits (296), Expect = 2.630e-26 Identity = 69/138 (50.00%), Postives = 86/138 (62.32%), Query Frame = 1
Query: 7 GDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYA--GPTQAMY-STILVILQDLPADELQESFDAIDEVVKHRDSSSVVV 411
GDR+ + A R DG + DR LS LSGGQWRR SLSL L F +L +RG +LLVLDE L+ LD+ GR V +LR + N D P ++ STIL+ILQDL A+EL+ESFD IDEV K SS V++
Sbjct: 598 GDRISRSAGVRGPDGEWLDRPLSSLSGGQWRRCSLSLSLGFSDLVARRGHLRPSLLVLDEPLTHLDASGRSHVGKVLRRMVRRANDIDDDVEKFSPLGGLHVSTILIILQDLAAEELEESFDQIDEVCKEGGSSRVII 735
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Match: A0A7S3V904_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V904_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.060e-25 Identity = 67/140 (47.86%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 7 GDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRGRFSCNLLVLDEVLSQLDSCGRERVANMLRALTHGRNADSDSYAGPTQAM----YSTILVILQDLPADELQESFDAIDEVVKHRDSSSVVVD 414
GD++ + AS +++G + R LS LSGGQWRR SL+L L F +L +RG+ +LLVLDE L+ LDS GR+ V +LR + + S+ + G + + STIL+ILQDL A+EL ESFD IDEVVK + S VV+D
Sbjct: 1306 GDKITRTASVLSSNGSWISRPLSSLSGGQWRRCSLALSLGFSDLVARRGKLCSSLLVLDEPLTHLDSSGRDNVGKLLRKVV--QKQASEQFDGEKKRIGGLSVSTILIILQDLVAEELSESFDKIDEVVKCQGHSKVVID 1443 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig97.20692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig97.20692.1 >prot_S-firma_M_contig97.20692.1 ID=prot_S-firma_M_contig97.20692.1|Name=mRNA_S-firma_M_contig97.20692.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=143bp MDGDRVVKRASARAADGGFRDRSLSQLSGGQWRRASLSLELAFVELARQRback to top mRNA from alignment at S-firma_M_contig97:49793..51485- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig97.20692.1 ID=mRNA_S-firma_M_contig97.20692.1|Name=mRNA_S-firma_M_contig97.20692.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1693bp|location=Sequence derived from alignment at S-firma_M_contig97:49793..51485- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig97:49793..51485- >mRNA_S-firma_M_contig97.20692.1 ID=mRNA_S-firma_M_contig97.20692.1|Name=mRNA_S-firma_M_contig97.20692.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=858bp|location=Sequence derived from alignment at S-firma_M_contig97:49793..51485- (Sphaerotrichia firma Sfir_13m male)back to top |