mRNA_S-firma_M_contig97.20691.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig97.20691.1
Unique NamemRNA_S-firma_M_contig97.20691.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig97.20691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig97contigS-firma_M_contig97:49394..49769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig97.20691.1prot_S-firma_M_contig97.20691.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig97 49399..49722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828806.2004848-UTR-S-firma_M_contig97:49393..493981622828806.2004848-UTR-S-firma_M_contig97:49393..49398Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig97 49394..49398 +
1697105173.7524693-UTR-S-firma_M_contig97:49393..493981697105173.7524693-UTR-S-firma_M_contig97:49393..49398Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig97 49394..49398 +
1622828806.230159-UTR-S-firma_M_contig97:49722..497691622828806.230159-UTR-S-firma_M_contig97:49722..49769Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig97 49723..49769 +
1697105173.7764993-UTR-S-firma_M_contig97:49722..497691697105173.7764993-UTR-S-firma_M_contig97:49722..49769Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig97 49723..49769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828806.2165153-CDS-S-firma_M_contig97:49398..497221622828806.2165153-CDS-S-firma_M_contig97:49398..49722Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig97 49399..49722 +
1697105173.76613-CDS-S-firma_M_contig97:49398..497221697105173.76613-CDS-S-firma_M_contig97:49398..49722Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig97 49399..49722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig97.20691.1

>prot_S-firma_M_contig97.20691.1 ID=prot_S-firma_M_contig97.20691.1|Name=mRNA_S-firma_M_contig97.20691.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=108bp
METALSLMRWQVSHTPNVIRAPIGNRGGLRHSNMSNLLPKHTHHYIEQTG
RLTPRLKRQDGAPCRRHTLASGNTGRSRSYAYTSNYRFKSVPSPRASKDI
LEYTHDG*
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mRNA from alignment at S-firma_M_contig97:49394..49769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig97.20691.1 ID=mRNA_S-firma_M_contig97.20691.1|Name=mRNA_S-firma_M_contig97.20691.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=376bp|location=Sequence derived from alignment at S-firma_M_contig97:49394..49769+ (Sphaerotrichia firma Sfir_13m male)
GTCCGATGGAAACGGCGTTGTCACTGATGCGGTGGCAGGTCTCTCACACC
CCCAATGTAATTAGAGCTCCGATAGGCAATCGAGGTGGGCTTCGCCATTC
TAACATGTCCAACCTCTTGCCGAAACACACCCACCACTATATAGAGCAGA
CGGGCCGACTCACGCCACGCTTGAAACGTCAGGATGGCGCTCCTTGCCGC
CGACACACCCTTGCGAGCGGAAACACTGGTCGGAGCAGAAGCTATGCCTA
CACCTCAAATTACCGATTCAAATCAGTGCCGTCACCAAGGGCGAGCAAGG
ATATACTTGAATACACACACGACGGTTGATTCGCCAAAAATGTTGTTGGA
CCATCGCTATTCTCCGCCACCCTCCC
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Coding sequence (CDS) from alignment at S-firma_M_contig97:49394..49769+

>mRNA_S-firma_M_contig97.20691.1 ID=mRNA_S-firma_M_contig97.20691.1|Name=mRNA_S-firma_M_contig97.20691.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=648bp|location=Sequence derived from alignment at S-firma_M_contig97:49394..49769+ (Sphaerotrichia firma Sfir_13m male)
ATGGAAACGGCGTTGTCACTGATGCGGTGGCAGGTCTCTCACACCCCCAA
TGTAATTAGAGCTCCGATAGGCAATCGAGGTGGGCTTCGCCATTCTAACA
TGTCCAACCTCTTGCCGAAACACACCCACCACTATATAGAGCAGACGGGC
CGACTCACGCCACGCTTGAAACGTCAGGATGGCGCTCCTTGCCGCCGACA
CACCCTTGCGAGCGGAAACACTGGTCGGAGCAGAAGCTATGCCTACACCT
CAAATTACCGATTCAAATCAGTGCCGTCACCAAGGGCGAGCAAGGATATA
CTTGAATACACACACGACGGTTGAATGGAAACGGCGTTGTCACTGATGCG
GTGGCAGGTCTCTCACACCCCCAATGTAATTAGAGCTCCGATAGGCAATC
GAGGTGGGCTTCGCCATTCTAACATGTCCAACCTCTTGCCGAAACACACC
CACCACTATATAGAGCAGACGGGCCGACTCACGCCACGCTTGAAACGTCA
GGATGGCGCTCCTTGCCGCCGACACACCCTTGCGAGCGGAAACACTGGTC
GGAGCAGAAGCTATGCCTACACCTCAAATTACCGATTCAAATCAGTGCCG
TCACCAAGGGCGAGCAAGGATATACTTGAATACACACACGACGGTTGA
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