mRNA_S-firma_M_contig9657.20652.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9657.20652.1
Unique NamemRNA_S-firma_M_contig9657.20652.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9657.20652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9657contigS-firma_M_contig9657:1083..2085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828802.3616276-CDS-S-firma_M_contig9657:1082..11891622828802.3616276-CDS-S-firma_M_contig9657:1082..1189Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9657 1083..1189 +
1697105171.4766777-CDS-S-firma_M_contig9657:1082..11891697105171.4766777-CDS-S-firma_M_contig9657:1082..1189Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9657 1083..1189 +
1622828802.3746274-CDS-S-firma_M_contig9657:1926..20831622828802.3746274-CDS-S-firma_M_contig9657:1926..2083Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9657 1927..2083 +
1697105171.4858854-CDS-S-firma_M_contig9657:1926..20831697105171.4858854-CDS-S-firma_M_contig9657:1926..2083Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9657 1927..2083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9657.20652.1prot_S-firma_M_contig9657.20652.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9657 1083..2083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9657.20652.1

>prot_S-firma_M_contig9657.20652.1 ID=prot_S-firma_M_contig9657.20652.1|Name=mRNA_S-firma_M_contig9657.20652.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=88bp
GWGWGWEGGGAPTSPRSEGPGGPWDRRHHHRAEGSGSFEGTPGRGRARPP
PPPPHRREFPSPREARSADFSRSRPRSAPAARRDNGRA
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mRNA from alignment at S-firma_M_contig9657:1083..2085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9657.20652.1 ID=mRNA_S-firma_M_contig9657.20652.1|Name=mRNA_S-firma_M_contig9657.20652.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1003bp|location=Sequence derived from alignment at S-firma_M_contig9657:1083..2085+ (Sphaerotrichia firma Sfir_13m male)
GGATGGGGATGGGGATGGGAAGGTGGAGGAGCTCCTACGAGCCCCCGGTC
TGAGGGCCCCGGGGGGCCTTGGGACCGACGACACCACCACCGAGCGGAGG
GAAGCGGGTGAGTCGAGGTCACGGCCATGAATTGGTGATGGGTTTCGGCA
TGTGCGGGGGGGCGAAGGGGGGGCAGGCGGAGGACGTATGTGGCTGCTTT
TTCTCGGTTGAATTTTCTTTGCAAAGCCGCTGCGCAATGGCCAAATTTCG
GCGTCTCGAGGTATTTCCCAAAATGTAGGTGTGAAGCGTGTGGTGCTGTA
TGTGCCTGTGGTCGAGGGCCTGCCTTTCCGAAGCGCGAGGTACGGGCCCT
CCCTGCTGGTGTGAGGGTGGGTCGACCTGAAGCCCGTCAGCTGTACGGTG
GTGTGACTAAATAGTGCACACAGTTGTAGTGCAAACGGTATTCGGGGTTC
ATGTCTTGCGCACCCTCGCGGGATTGGTGTCAGCGTGCGGGATTCACAGA
GCACAGCAGTAGTCAAGGTCAAACGGCGAGAACCGAGGTATCTCCAGACG
GTAGGCTATGTTTCTACTACGGGCGCAGCCTAGGACGTTTTCTTGCTGAT
AGTCTCAGGCGGGAAACGGCTGTTGGAATCAACCGAACCTTTCCCTCCTC
GGTTACCCCTTGCTGTTAAGACAAGACCCACACAACGCCCGTTTCATGCC
GGAGGTGCTTCAGCTCAACGGCTGACGGAGCCGCAATGAGCGTCTCCCCT
CATCTCATCTCACTCTATTTCTTCTCTTTCCCGGCCTCGTTCTCTTTGGC
TCTACCGGAAAAAACACTCAACACCAACGCTTAATTCGTCCCAGAAGCTT
CGAAGGGACTCCAGGAAGAGGGCGGGCACGACCACCACCACCACCACCAC
ACCGAAGAGAGTTTCCCTCCCCGAGAGAGGCACGGAGCGCCGATTTCTCC
CGAAGCAGGCCCCGATCCGCGCCGGCGGCAAGAAGGGACAACGGAAGAGC
TAC
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Coding sequence (CDS) from alignment at S-firma_M_contig9657:1083..2085+

>mRNA_S-firma_M_contig9657.20652.1 ID=mRNA_S-firma_M_contig9657.20652.1|Name=mRNA_S-firma_M_contig9657.20652.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=528bp|location=Sequence derived from alignment at S-firma_M_contig9657:1083..2085+ (Sphaerotrichia firma Sfir_13m male)
GGATGGGGATGGGGATGGGAAGGTGGAGGAGCTCCTACGAGCCCCCGGTC
TGAGGGCCCCGGGGGGCCTTGGGACCGACGACACCACCACCGAGCGGAGG
GAAGCGGGGATGGGGATGGGGATGGGAAGGTGGAGGAGCTCCTACGAGCC
CCCGGTCTGAGGGCCCCGGGGGGCCTTGGGACCGACGACACCACCACCGA
GCGGAGGGAAGCGGAAGCTTCGAAGGGACTCCAGGAAGAGGGCGGGCACG
ACCACCACCACCACCACCACACCGAAGAGAGTTTCCCTCCCCGAGAGAGG
CACGGAGCGCCGATTTCTCCCGAAGCAGGCCCCGATCCGCGCCGGCGGCA
AGAAGGGACAACGGAAGAGCTAAGCTTCGAAGGGACTCCAGGAAGAGGGC
GGGCACGACCACCACCACCACCACCACACCGAAGAGAGTTTCCCTCCCCG
AGAGAGGCACGGAGCGCCGATTTCTCCCGAAGCAGGCCCCGATCCGCGCC
GGCGGCAAGAAGGGACAACGGAAGAGCT
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