mRNA_S-firma_M_contig964.20640.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig964.20640.1
Unique NamemRNA_S-firma_M_contig964.20640.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig964.20640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig964contigS-firma_M_contig964:21576..23019 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size772
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig964.20640.1prot_S-firma_M_contig964.20640.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig964 21691..22938 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828800.5429354-UTR-S-firma_M_contig964:21575..216901622828800.5429354-UTR-S-firma_M_contig964:21575..21690Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig964 21576..21690 -
1697105170.3255732-UTR-S-firma_M_contig964:21575..216901697105170.3255732-UTR-S-firma_M_contig964:21575..21690Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig964 21576..21690 -
1622828800.5868375-UTR-S-firma_M_contig964:22938..230191622828800.5868375-UTR-S-firma_M_contig964:22938..23019Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig964 22939..23019 -
1697105170.3740141-UTR-S-firma_M_contig964:22938..230191697105170.3740141-UTR-S-firma_M_contig964:22938..23019Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig964 22939..23019 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828800.5616362-CDS-S-firma_M_contig964:21690..221521622828800.5616362-CDS-S-firma_M_contig964:21690..22152Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig964 21691..22152 -
1697105170.3428378-CDS-S-firma_M_contig964:21690..221521697105170.3428378-CDS-S-firma_M_contig964:21690..22152Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig964 21691..22152 -
1622828800.5747705-CDS-S-firma_M_contig964:22824..229381622828800.5747705-CDS-S-firma_M_contig964:22824..22938Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig964 22825..22938 -
1697105170.3614388-CDS-S-firma_M_contig964:22824..229381697105170.3614388-CDS-S-firma_M_contig964:22824..22938Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig964 22825..22938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig964.20640.1

>prot_S-firma_M_contig964.20640.1 ID=prot_S-firma_M_contig964.20640.1|Name=mRNA_S-firma_M_contig964.20640.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=192bp
MVERKKGTGGGRDGVERVAPIGHVFRQIWTLSSERERHQQQQQQQQQLAR
VRSGVGTGGVAQLRQQKGRARSLGHTPRSSTKAHTPALVLFCCNQAFGSS
VCRHRPFRRAPTPPSFSRTFSRTCGDRKRRHVGLAGIPRPLPSPDCFAFA
SQARQRRLVAVFGKNLQRVIQGVGGFVRAAHTHTHTVRAWK*
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mRNA from alignment at S-firma_M_contig964:21576..23019-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig964.20640.1 ID=mRNA_S-firma_M_contig964.20640.1|Name=mRNA_S-firma_M_contig964.20640.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1444bp|location=Sequence derived from alignment at S-firma_M_contig964:21576..23019- (Sphaerotrichia firma Sfir_13m male)
GAGCCAGGAGAGCGGGCTGCATGGGTGCATGGGACAGGCTGCATCTGCTG
CATCTTCTGTGAGAAAAAAATATGCCCACCCATGGTTGAGAGGAAGAAGG
GAACAGGGGGAGGGAGAGATGGCGTCGAGCGCGTGGCGCCAATCGGACAT
GTGTTTCGCCAGATCTGGACTCTCTCCTCTGAGAGAGAGAGGCATGCGTG
TGCGTGCCTCCGGCCACAACAGGTGTACTATACAATCGATGTTGCTTTGT
TTTATTGCGCCATGCGCTTCACCTGACGTGCCCTTCCTCTCGCTCGGTCA
GAAAAAAAATACCAGTACGGACAAGTACGGAGTAGAAAATCAAATGAAAC
ACCACCGCTTTTTGTTTCCGCGACGGGGTCCGAAGTCCGAAGCGCCAAGT
TTTAGTCCGTTTGGCGCAGACCGAAACGTGTGTCTAACCTCACACCACCA
TAGAGAAAAGATCAGCTGCCCGGGGTAACCACCAGGTGAGTATCACATTA
CCAAAACCATTGTTGTAGTGTAAGTAGACTCGGATTGTGGTCCACTGCCA
ACTCACTTTTTGTGCTCGAGTTCGCTACGTGGGAGCTTGGCGTGGCCAAG
GAGCAAGCGGGTTCCCTTGCAGTAGGAATCGTGTGGCGGGCCAAGGAGCA
AGCGCCGATTCGTGCCCCCTCTTTCTACAAACCTAGTACAGAGAAAGAGG
CGTGCTTCCCCTGGGCACGTCACAGCGTTTTTCGTTTGGAGTTAACCGCG
TGATGGGGTTTTCTCTACGCGCCGCCGCGCCGCCCTGCCGTGTCATATCT
TGTCATGCAGCATAGATAGAGAAGAGGACGGCTGGGAGTGGAAGAGACCA
AACACCTCGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTGGCA
CGCGTCAGGAGTGGGGTGGGGACAGGAGGCGTCGCACAGCTTCGCCAGCA
AAAGGGCCGGGCCCGGTCCCTGGGACACACACCGCGATCTTCCACAAAAG
CTCACACACCCGCTCTTGTTTTGTTTTGCTGTAACCAAGCCTTCGGATCT
TCAGTGTGTCGTCACCGCCCCTTCCGCCGCGCCCCAACGCCTCCCTCGTT
TTCACGCACGTTTTCACGCACGTGTGGAGACAGAAAACGGCGGCACGTAG
GACTTGCAGGCATTCCCCGCCCCCTTCCCTCCCCGGATTGTTTTGCGTTT
GCGTCACAGGCCAGACAGAGGCGGTTGGTTGCTGTTTTCGGTAAAAATCT
CCAACGGGTCATTCAAGGGGTCGGTGGGTTTGTGCGCGCAGCACACACAC
ACACACATACTGTTCGTGCGTGGAAGTAGTTGGTCGAAGGTAGCCGTTAC
GTATGACGCAGATGTAATCTACCTGTAGGGGCATGTGGTTGAGAACCCTT
GGATGAGACTGCGGAGCCCCTCCGTTTCTGGAAGTTTTGGGTCA
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Coding sequence (CDS) from alignment at S-firma_M_contig964:21576..23019-

>mRNA_S-firma_M_contig964.20640.1 ID=mRNA_S-firma_M_contig964.20640.1|Name=mRNA_S-firma_M_contig964.20640.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1152bp|location=Sequence derived from alignment at S-firma_M_contig964:21576..23019- (Sphaerotrichia firma Sfir_13m male)
ATGGTTGAGAGGAAGAAGGGAACAGGGGGAGGGAGAGATGGCGTCGAGCG
CGTGGCGCCAATCGGACATGTGTTTCGCCAGATCTGGACTCTCTCCTCTG
AGAGAGAGAGGCATATGGTTGAGAGGAAGAAGGGAACAGGGGGAGGGAGA
GATGGCGTCGAGCGCGTGGCGCCAATCGGACATGTGTTTCGCCAGATCTG
GACTCTCTCCTCTGAGAGAGAGAGGCATCAGCAGCAGCAGCAGCAGCAGC
AGCAGCTGGCACGCGTCAGGAGTGGGGTGGGGACAGGAGGCGTCGCACAG
CTTCGCCAGCAAAAGGGCCGGGCCCGGTCCCTGGGACACACACCGCGATC
TTCCACAAAAGCTCACACACCCGCTCTTGTTTTGTTTTGCTGTAACCAAG
CCTTCGGATCTTCAGTGTGTCGTCACCGCCCCTTCCGCCGCGCCCCAACG
CCTCCCTCGTTTTCACGCACGTTTTCACGCACGTGTGGAGACAGAAAACG
GCGGCACGTAGGACTTGCAGGCATTCCCCGCCCCCTTCCCTCCCCGGATT
GTTTTGCGTTTGCGTCACAGGCCAGACAGAGGCGGTTGGTTGCTGTTTTC
GGTAAAAATCTCCAACGGGTCATTCAAGGGGTCGGTGGGTTTGTGCGCGC
AGCACACACACACACACATACTGTTCGTGCGTGGAAGTAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCTGGCACGCGTCAGGAGTGGGGTGGGGACAGGA
GGCGTCGCACAGCTTCGCCAGCAAAAGGGCCGGGCCCGGTCCCTGGGACA
CACACCGCGATCTTCCACAAAAGCTCACACACCCGCTCTTGTTTTGTTTT
GCTGTAACCAAGCCTTCGGATCTTCAGTGTGTCGTCACCGCCCCTTCCGC
CGCGCCCCAACGCCTCCCTCGTTTTCACGCACGTTTTCACGCACGTGTGG
AGACAGAAAACGGCGGCACGTAGGACTTGCAGGCATTCCCCGCCCCCTTC
CCTCCCCGGATTGTTTTGCGTTTGCGTCACAGGCCAGACAGAGGCGGTTG
GTTGCTGTTTTCGGTAAAAATCTCCAACGGGTCATTCAAGGGGTCGGTGG
GTTTGTGCGCGCAGCACACACACACACACATACTGTTCGTGCGTGGAAGT
AG
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