mRNA_S-firma_M_contig960.20598.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig960.20598.1
Unique NamemRNA_S-firma_M_contig960.20598.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: D8LSH5_ECTSI (Ornithine aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSH5_ECTSI)

HSP 1 Score: 755 bits (1949), Expect = 4.160e-265
Identity = 378/425 (88.94%), Postives = 395/425 (92.94%), Query Frame = 1
Query:    1 MSQGARAVSLAAAKTRSRALLGRNLVPSLLRGEKDAGGSTRTIAMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            MSQ AR VS AAAK+R + LLGR+L            GS R  AMASTS +YL+LE RYNA NYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIV ALV QAQKLTLASRAFSTDCLGEFALY+TAYFGYDR+LPMNTGVEGGETAIKLARRWGYDVKGVE+NKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALE+RLASNPN VAFMVEPIQGEAGVVVPDDGYMAKVH+VCRRHKVLLIADEVQTGLCRAGT+LACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMA NAC MG+RLRAGLRSLNAPGVEL+RGRGLLNAVV+KD+RGDGTKAWDMCL+LKEKGLLAKPTHG + R
Sbjct:    5 MSQAARVVSTAAAKSRGKGLLGRHLAA--------LHGSRR--AMASTSDDYLILEQRYNAHNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVGALVDQAQKLTLASRAFSTDCLGEFALYVTAYFGYDRILPMNTGVEGGETAIKLARRWGYDVKGVEENKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEKRLASNPNTVAFMVEPIQGEAGVVVPDDGYMAKVHEVCRRHKVLLIADEVQTGLCRAGTDLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAENACLMGERLRAGLRSLNAPGVELIRGRGLLNAVVVKDDRGDGTKAWDMCLDLKEKGLLAKPTHGNIIR 419          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: A0A8J8FJM7_9BACT (Ornithine aminotransferase n=1 Tax=Limnovirga soli TaxID=2656915 RepID=A0A8J8FJM7_9BACT)

HSP 1 Score: 548 bits (1411), Expect = 1.800e-184
Identity = 261/384 (67.97%), Postives = 314/384 (81.77%), Query Frame = 1
Query:  124 TIAMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            T  ++  +  YL LE++Y A NYHPLPVVL++G+GV +WDV+GK+Y+D+LS YSAVNQGHCHP+I++ALV QAQKLTL SRAF +D LGE+  Y+T+YFGYD+VLPMNTGVEGGETAIKLARRW YD KGV +N+A V+FAE NFWGRT+AA+SSSTDP SY G+GP+MPGF+ VPYND+ ALE+ L +NPN+ AFMVEPIQGEAGVVVP DGY+A V  +C R+ VL IADE+QTGL R G  LACDH+GVRPDIL+LGKALSGGV PVSAVLADD+IML +KPG+HGSTYGGNP+AC VA  AL+VL++E MA NA  MG  LR  L +L +P ++LVRGRGLLNA+VI     +   AWD CL LK+ GLLAKPTHG   R
Sbjct:    3 TQHLSQQAAHYLHLEEKYGAHNYHPLPVVLNRGEGVFLWDVDGKKYYDFLSGYSAVNQGHCHPRIIKALVEQAQKLTLTSRAFHSDLLGEYEQYITSYFGYDKVLPMNTGVEGGETAIKLARRWAYDKKGVPENQATVIFAEGNFWGRTMAAISSSTDPSSYKGFGPFMPGFNLVPYNDLEALEKALTANPNVAAFMVEPIQGEAGVVVPHDGYLAGVRALCTRYNVLFIADEIQTGLARTGKMLACDHEGVRPDILILGKALSGGVLPVSAVLADDDIMLNIKPGEHGSTYGGNPLACAVAMEALQVLKDEQMAENAEVMGAYLRNSLEALQSPYIQLVRGRGLLNAIVINHSNPEA--AWDYCLALKDNGLLAKPTHGDKIR 384          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: UPI001BDEC1C9 (ornithine--oxo-acid transaminase n=1 Tax=Flavihumibacter sp. IMCC34838 TaxID=2838156 RepID=UPI001BDEC1C9)

HSP 1 Score: 548 bits (1411), Expect = 1.800e-184
Identity = 262/384 (68.23%), Postives = 319/384 (83.07%), Query Frame = 1
Query:  124 TIAMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            TIA++  ++ YL LED+Y A NYHP+PVVL+KG+GV +WDV+GK+Y+D+LS YSAVNQGHCHPKI++ALVSQA+ LTL SRAF  + LGE+  Y+T YFGYD+VLPMNTGVEGGETAIKLARRWGY  KG+ DNKA ++FAENNFWGRT+AA+SSSTDP SY+ +GPYMPGF  VPYN++ ALE+ L  +P++ AFMVEPIQGEAGVVVPD+GY+  V ++C ++ VL IADE+QTGL R G  LACDH+ VRPDIL+LGKALSGG  PVSAVLADDE+M+ +KPG+HGSTYGGNP+ACRVA AALEVL+EE MA +A  MGQ LR  L  LN+P +  +RGRGLLNA+VIK E  +   AWD+CL+LKE+GLLAKPTHG   R
Sbjct:    4 TIALSEKTQYYLDLEDKYGAHNYHPIPVVLAKGQGVFLWDVDGKRYYDFLSGYSAVNQGHCHPKIIQALVSQAEVLTLTSRAFYNNLLGEYERYITHYFGYDKVLPMNTGVEGGETAIKLARRWGYVKKGIPDNKAKIIFAENNFWGRTMAAISSSTDPSSYSKFGPYMPGFELVPYNNLPALEKAL-QDPHVAAFMVEPIQGEAGVVVPDEGYLKGVRELCSQYNVLFIADEIQTGLARTGKMLACDHENVRPDILILGKALSGGTLPVSAVLADDEVMMNIKPGEHGSTYGGNPLACRVAMAALEVLKEEKMAEHAEKMGQLLRDELAGLNSPYIATIRGRGLLNAIVIKHENPEA--AWDLCLKLKEEGLLAKPTHGDKIR 384          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: A0A835Z9I4_9STRA (Ornithine aminotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I4_9STRA)

HSP 1 Score: 549 bits (1415), Expect = 3.430e-184
Identity = 268/400 (67.00%), Postives = 312/400 (78.00%), Query Frame = 1
Query:  124 TIAMASTSKEYLMLEDRYNA----------------RNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            T A   TS +Y+  ED Y A                 NY PLPVVL+KG+G+ VWDVEG +Y DWLSAYSAVNQGH HP IV ALV QAQ+++L SRAF +D LG F  Y+T YFGYDRVLPMNTGVEGGETAIKLARRW YDVKGV D +A VVF   NFWGRTLAAVSSSTDP  Y G+GPYMPGF  +PYND+ AL   L ++ NI AFM+EPIQGEAGVVVPD GY+  V ++C  H VL+IADEVQTGLCR G  L CD +GV+PDIL+LGKALSGG YPVSAVL+  E+MLT+KPG+HGSTYGGNPMACRVA AAL+VL++E MA NA  MGQRLR GLR++NAP VELVRG+GLLNA+V+K+E G+  +AW +CL++KEKGLLAKPTHG + R
Sbjct:   43 TAAGPKTSADYMAAEDAYGATRTRLTRCCAVPYAYAENYKPLPVVLNKGRGIFVWDVEGNRYMDWLSAYSAVNQGHSHPAIVSALVEQAQRISLTSRAFYSDGLGPFEEYITEYFGYDRVLPMNTGVEGGETAIKLARRWAYDVKGVPDGEATVVFCAGNFWGRTLAAVSSSTDPTCYRGFGPYMPGFEIIPYNDIGALTTLLEADKNIAAFMLEPIQGEAGVVVPDKGYLQAVRELCTEHNVLMIADEVQTGLCRTGKQLCCDWEGVKPDILILGKALSGGTYPVSAVLSSHEVMLTIKPGEHGSTYGGNPMACRVAMAALQVLKDENMAENATEMGQRLRDGLRAINAPVVELVRGKGLLNAIVVKEE-GESDRAWQICLKMKEKGLLAKPTHGNIIR 441          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: A0A7S1WR68_ALECA (Ornithine aminotransferase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WR68_ALECA)

HSP 1 Score: 545 bits (1404), Expect = 6.570e-183
Identity = 263/390 (67.44%), Postives = 321/390 (82.31%), Query Frame = 1
Query:  130 AMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASN-PNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPG---VELVRGRGLLNAVVI----KDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            A++S+ +  + LE+R+ ARNYHPLPVVL +GKGV VWD++GK+Y+D+LSAYSAVNQGHCHPKI+ ALV QA++LTL SRAF  D LGE++ + T YFG+DR+LPMNTGVEGGETAIKLARRWGYDVKG+   KA V+FA  NFWGRTLAA+S+S DP S +G+GP++PGF+ V YNDVAAL E L  +  N+ AFMVEPIQGEAGVVVPDDGY+ +V ++C+ H+VLLI DEVQTGL R GT LACDHDGVRPDIL+LGKALSGGV PVSAVL+ DE+MLT+KPG+HGSTYGGNP+AC VATAAL+VL EEG+AANA A G++LR GLR+++  G   + LVRGRGLLNA+V+    K   GD   AW++CL+  E GLLAKPTHG + R
Sbjct:   29 AVSSSQEAMIALEERHGARNYHPLPVVLKEGKGVHVWDIDGKRYYDFLSAYSAVNQGHCHPKIISALVEQAKRLTLTSRAFHNDVLGEYSRFATEYFGFDRLLPMNTGVEGGETAIKLARRWGYDVKGIPPGKARVLFASGNFWGRTLAAISTSDDPSSTSGFGPFVPGFTNVTYNDVAALREVLEQDGANVAAFMVEPIQGEAGVVVPDDGYLREVKELCQAHRVLLIIDEVQTGLGRCGTKLACDHDGVRPDILILGKALSGGVLPVSAVLSSDEVMLTIKPGEHGSTYGGNPLACTVATAALQVLEEEGLAANAVARGEQLRQGLRAISGEGGSLISLVRGRGLLNAIVVGGSTKGSYGDEGVAWELCLKFAENGLLAKPTHGNIIR 418          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: UPI00198280D7 (Ornithine--oxo-acid transaminase n=1 Tax=Fibrella sp. TaxID=1871320 RepID=UPI00198280D7)

HSP 1 Score: 542 bits (1397), Expect = 1.900e-182
Identity = 260/374 (69.52%), Postives = 310/374 (82.89%), Query Frame = 1
Query:  154 YLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            +L LE RY A NYHPLPVVL +G+GV VWDV+GK+YFD+LS YSAVNQGHCHP+IV ALV+QAQKLTL SRAF ++ LGE+A ++T YFGYDRVLPMNTGVEGGETA+KLARRWGY+ KG+ +N+A +VFAE NFWGRTLAA+SSSTDP SY G+GP++PGF  VPYND+AALE    S+P + AFM+EPIQGEAGVV+PD+GY+  V ++C R+ VLLIADE+QTGLCR G  LACDH+ VRPDILVLGKALSGGV PVSAVLADD +ML +KPG+HGSTYGGNP+AC VA  AL+VLR+E MA NA AMG  LR GLRSL++P ++ VRG+GLLNA+VI     +   AW++CL L E GLLAKPTHG   R
Sbjct:   10 FLELEARYGAHNYHPLPVVLERGEGVFVWDVDGKRYFDFLSGYSAVNQGHCHPRIVGALVAQAQKLTLVSRAFHSNLLGEYAKFITDYFGYDRVLPMNTGVEGGETAVKLARRWGYERKGIAENQAKIVFAEGNFWGRTLAAISSSTDPSSYRGFGPFLPGFVLVPYNDLAALETAF-SDPTVAAFMIEPIQGEAGVVIPDEGYLRSVRELCDRYDVLLIADEIQTGLCRTGKMLACDHESVRPDILVLGKALSGGVLPVSAVLADDAVMLNIKPGEHGSTYGGNPLACAVAMEALKVLRDEKMAENAAAMGDLLREGLRSLDSPRIDTVRGKGLLNAIVINHSHPNA--AWEICLRLMEHGLLAKPTHGNKIR 380          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: A0A7R9W746_9STRA (Ornithine aminotransferase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W746_9STRA)

HSP 1 Score: 544 bits (1402), Expect = 2.010e-182
Identity = 272/424 (64.15%), Postives = 333/424 (78.54%), Query Frame = 1
Query:   52 RALLGRNLVPSLLR---GEKDAGGSTRTIA--------MASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASN-PNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSL-NAPGVELVRGRGLLNAVVI---KDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            R+ LGR++V + +      K +G  TRT A        +++ + E + LED++ A NYHPLPVVL+KG+G  VWD++G  YFD+LSAYSAVNQGHCHPKI+ ALV QAQ LTL SRAF  DCLG +  ++T YFGYDRVLPMNTGVEGGETAIKLARRWGYDVKG+ +N+A V+FA NNFWGRTLAA+SSS DP +Y G+GPYMPGFS+V YN+VA LE     +  NI AFMVEPIQGEAGVVVPD GYM +V ++C +HKVLLIADEVQTGL R G  LA DHD  +PDI+VLGKALSGGV PVSAVLA +E+MLT++PG+HGSTYGGNP+AC+VATAALEVLR+E ++ N+ A G++LR+GL +L  +  +E VRG+GLLNA+VI   K + GD  KAWD+CL +KE GLLAKPTHG + R
Sbjct:    6 RSSLGRSIVAARVARPSAAKTSGSCTRTFATLTEELDDVSAATAECIRLEDKHGAHNYHPLPVVLAKGEGTKVWDIDGTSYFDFLSAYSAVNQGHCHPKIIGALVEQAQHLTLTSRAFHNDCLGRYVEFITDYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGIPENQARVIFAGNNFWGRTLAAISSSNDPTAYTGFGPYMPGFSSVRYNNVAELEAEFERDGANIAAFMVEPIQGEAGVVVPDAGYMTEVKELCEKHKVLLIADEVQTGLGRTGKRLAVDHDNCKPDIIVLGKALSGGVLPVSAVLASNEVMLTLRPGEHGSTYGGNPLACKVATAALEVLRDENLSENSAARGEQLRSGLSALAGSTSIETVRGKGLLNAIVIDQPKGKYGDHGKAWDVCLAMKENGLLAKPTHGNIIR 429          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: UPI001CC7E9BC (ornithine--oxo-acid transaminase n=1 Tax=Flavihumibacter profundi TaxID=2716883 RepID=UPI001CC7E9BC)

HSP 1 Score: 542 bits (1397), Expect = 2.360e-182
Identity = 262/387 (67.70%), Postives = 315/387 (81.40%), Query Frame = 1
Query:  115 STRTIAMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            ST TIA+   S+ ++ LE++Y A NYHP+PVVL+KG+GV +WDVEGK+Y+D+LS YSAVNQGHCHPKI++AL+ QA KLTL SRAF  D LGE+  Y+TAYFGYD+VLPMNTGVEGGETAIKLARRW Y  KGV +NKA V+FAENNFWGRT+AA+SSSTDP SY  +GP+MPGF  VPYND+A+LE+ L  +PN+ AFMVEPIQGEAGVVVPD+GY+  V D+C ++ VL IADE+QTGL R G  LACDH+ VRPDIL+LGKALSGG  PVSAVLADD IML + PG+HGSTYGGNP+AC VA AAL+VL+EE MA  A  MGQ LRA L  LN+P ++L+RG+GLLNA+VI     +   AWD+CL LK++GLLAKPTHG   R
Sbjct:    2 STTTIALPEKSQYFIDLENQYGAHNYHPIPVVLNKGQGVFLWDVEGKRYYDFLSGYSAVNQGHCHPKIIQALIEQAGKLTLTSRAFHNDLLGEYEKYITAYFGYDKVLPMNTGVEGGETAIKLARRWAYVKKGVAENKAKVIFAENNFWGRTMAAISSSTDPSSYRQFGPFMPGFELVPYNDLASLEKAL-QDPNVAAFMVEPIQGEAGVVVPDEGYLKGVRDLCTQYNVLFIADEIQTGLARTGKMLACDHENVRPDILILGKALSGGALPVSAVLADDFIMLNIHPGEHGSTYGGNPLACAVAIAALQVLKEEKMAEKAEEMGQLLRAELAKLNSPFIKLIRGKGLLNAIVIDHPNKEA--AWDLCLHLKDEGLLAKPTHGDKIR 385          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: UPI001BDDFCD9 (ornithine--oxo-acid transaminase n=1 Tax=Flavihumibacter sp. IMCC34837 TaxID=2838157 RepID=UPI001BDDFCD9)

HSP 1 Score: 541 bits (1394), Expect = 6.900e-182
Identity = 259/387 (66.93%), Postives = 319/387 (82.43%), Query Frame = 1
Query:  115 STRTIAMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            ST  +++++ ++ +L LE+++ A NYHPLPVVL KG+GV +WDVEGK+Y+D+LS YSAVNQGHCHPKI++AL+ QA +LTL SRAF  + LGE+  Y+TAYFGYD+VLPMNTGVEGGETAIKLARRW Y  KGVEDNKA V+FA+NNFWGRT+AA+SSSTDP SY+ +GPYMPGF  VPYND+ +LE+ L  +PN+ A+MVEPIQGEAGVVVPD+GY+  V ++C ++ VLLIADE+QTGL R G  LACDH+GVRPDIL+LGKALSGGV PVSAVLADD IML +KPG+HGSTYGGNP+AC+VA AALEVL+EE MA  A  MGQ  R  L  L++P ++L+RG+GLLNA+VI     +   AWD+CL LKE+GLLAKPTHG   R
Sbjct:    2 STTVVSLSAKTQYFLDLENQFGAHNYHPLPVVLEKGEGVFLWDVEGKRYYDFLSGYSAVNQGHCHPKIIKALIEQATRLTLTSRAFHNNLLGEYEQYITAYFGYDKVLPMNTGVEGGETAIKLARRWAYTKKGVEDNKAKVIFAQNNFWGRTMAAISSSTDPSSYHQFGPYMPGFEIVPYNDLVSLEKAL-QDPNVAAYMVEPIQGEAGVVVPDEGYLTAVRELCTQYNVLLIADEIQTGLARTGKMLACDHEGVRPDILILGKALSGGVLPVSAVLADDFIMLNIKPGEHGSTYGGNPLACKVAMAALEVLKEENMAECAEEMGQLFRYELGKLDSPFIKLIRGKGLLNAIVINHPNPEA--AWDLCLLLKEEGLLAKPTHGDKIR 385          
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Match: UPI0019B909AB (Ornithine--oxo-acid transaminase n=1 Tax=Aquabacterium sp. TaxID=1872578 RepID=UPI0019B909AB)

HSP 1 Score: 540 bits (1390), Expect = 2.470e-181
Identity = 258/384 (67.19%), Postives = 313/384 (81.51%), Query Frame = 1
Query:  124 TIAMASTSKEYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQGHCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNTGVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDPESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVVPDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVLGKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVLREEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGTKAWDMCLELKEKGLLAKPTHGKLCR 1275
            TI  ++ +++Y+ LE++Y A NYHPLPVVL++G+GV VWDV+GK+Y+D+LS YSAVNQGHCHPKIV AL  QAQ+LTL SRAF ++ LGE+  Y+T YFGYD+VLPMNTGVE GETA+KLARRWGY VKG+ +N+A ++FA  NFWGRTLAA+SSSTDP SY  +GP+MPGF  V YND+AAL   L  + N+ AFM EPIQGEAGVVVPD+GY+  V ++C  + VL+IADE+QTGL R G  LACDH+ VRPDILVLGKALSGGV PVSAVLADDEIM+T+KPG+HGSTYGGNP+AC VA AAL+VL+EE MAANA AMG  LR+ +  LN+P +ELVRG+GLLNA+VIK    +   AWD+CL LKE GLLAKPTHG   R
Sbjct:    4 TITSSANTQQYIDLEEKYGAHNYHPLPVVLNRGEGVFVWDVDGKRYYDFLSGYSAVNQGHCHPKIVAALTQQAQQLTLTSRAFHSNLLGEYEQYITRYFGYDKVLPMNTGVEAGETAVKLARRWGYQVKGIAENQAKIIFAAGNFWGRTLAAISSSTDPSSYEKFGPFMPGFEIVAYNDLAALATAL-QDKNVAAFMFEPIQGEAGVVVPDEGYLTGVRNLCNEYNVLMIADEIQTGLARTGKMLACDHEEVRPDILVLGKALSGGVLPVSAVLADDEIMMTIKPGEHGSTYGGNPLACAVAIAALQVLKEENMAANAAAMGDLLRSEITKLNSPFIELVRGKGLLNAIVIKHSNPEA--AWDLCLTLKENGLLAKPTHGDKIR 384          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig960.20598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSH5_ECTSI4.160e-26588.94Ornithine aminotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A8J8FJM7_9BACT1.800e-18467.97Ornithine aminotransferase n=1 Tax=Limnovirga soli... [more]
UPI001BDEC1C91.800e-18468.23ornithine--oxo-acid transaminase n=1 Tax=Flavihumi... [more]
A0A835Z9I4_9STRA3.430e-18467.00Ornithine aminotransferase n=1 Tax=Tribonema minus... [more]
A0A7S1WR68_ALECA6.570e-18367.44Ornithine aminotransferase n=1 Tax=Alexandrium cat... [more]
UPI00198280D71.900e-18269.52Ornithine--oxo-acid transaminase n=1 Tax=Fibrella ... [more]
A0A7R9W746_9STRA2.010e-18264.15Ornithine aminotransferase n=1 Tax=Pseudictyota du... [more]
UPI001CC7E9BC2.360e-18267.70ornithine--oxo-acid transaminase n=1 Tax=Flavihumi... [more]
UPI001BDDFCD96.900e-18266.93ornithine--oxo-acid transaminase n=1 Tax=Flavihumi... [more]
UPI0019B909AB2.470e-18167.19Ornithine--oxo-acid transaminase n=1 Tax=Aquabacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig960contigS-firma_M_contig960:5059..11791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score545.0
Seed ortholog evalue3.9e-152
Seed eggNOG ortholog35128.Thaps27892
Preferred nameOAT
KEGG rclassRC00006,RC00062
KEGG koko:K00819
KEGG ReactionR00667
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
GOsGO:0001101,GO:0002376,GO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006520,GO:0006525,GO:0006527,GO:0006536,GO:0006560,GO:0006561,GO:0006591,GO:0006593,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0006979,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008483,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009266,GO:0009408,GO:0009413,GO:0009414,GO:0009415,GO:0009605,GO:0009607,GO:0009617,GO:0009626,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009733,GO:0009737,GO:0009741,GO:0009753,GO:0009814,GO:0009816,GO:0009987,GO:0010033,GO:0010035,GO:0010121,GO:0012501,GO:0014070,GO:0016043,GO:0016053,GO:0016054,GO:0016740,GO:0016769,GO:0018130,GO:0019493,GO:0019544,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0033554,GO:0033993,GO:0034050,GO:0034214,GO:0036094,GO:0042221,GO:0042538,GO:0042742,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046395,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0050662,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051259,GO:0051640,GO:0051641,GO:0051646,GO:0051704,GO:0051707,GO:0051716,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0097159,GO:0097305,GO:0098542,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607,GO:1901700
EggNOG free text desc.Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
EggNOG OGs2XAWX@2836,COG4992@1,KOG1402@2759
EC2.6.1.13
COG Functional cat.E
BiGG ReactioniMM904.YLR438W,iND750.YLR438W,iRC1080.CRv4_Au5_s11_g2570_t1
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01007
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionornithine aminotransferase
Ec32 orthologEc-21_003730.1
Exons10
Model size2874
Cds size1665
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828796.395293-CDS-S-firma_M_contig960:5058..52311622828796.395293-CDS-S-firma_M_contig960:5058..5231Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 5059..5231 +
1697105167.903863-CDS-S-firma_M_contig960:5058..52311697105167.903863-CDS-S-firma_M_contig960:5058..5231Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 5059..5231 +
1622828796.4099102-CDS-S-firma_M_contig960:5919..60431622828796.4099102-CDS-S-firma_M_contig960:5919..6043Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 5920..6043 +
1697105167.9159517-CDS-S-firma_M_contig960:5919..60431697105167.9159517-CDS-S-firma_M_contig960:5919..6043Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 5920..6043 +
1622828796.4218802-CDS-S-firma_M_contig960:6377..65241622828796.4218802-CDS-S-firma_M_contig960:6377..6524Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 6378..6524 +
1697105167.9312904-CDS-S-firma_M_contig960:6377..65241697105167.9312904-CDS-S-firma_M_contig960:6377..6524Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 6378..6524 +
1622828796.4339826-CDS-S-firma_M_contig960:7075..71531622828796.4339826-CDS-S-firma_M_contig960:7075..7153Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 7076..7153 +
1697105167.9479504-CDS-S-firma_M_contig960:7075..71531697105167.9479504-CDS-S-firma_M_contig960:7075..7153Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 7076..7153 +
1622828796.445855-CDS-S-firma_M_contig960:7854..79771622828796.445855-CDS-S-firma_M_contig960:7854..7977Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 7855..7977 +
1697105167.958716-CDS-S-firma_M_contig960:7854..79771697105167.958716-CDS-S-firma_M_contig960:7854..7977Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 7855..7977 +
1622828796.4606204-CDS-S-firma_M_contig960:8380..85091622828796.4606204-CDS-S-firma_M_contig960:8380..8509Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 8381..8509 +
1697105167.9686995-CDS-S-firma_M_contig960:8380..85091697105167.9686995-CDS-S-firma_M_contig960:8380..8509Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 8381..8509 +
1622828796.4753406-CDS-S-firma_M_contig960:8749..88691622828796.4753406-CDS-S-firma_M_contig960:8749..8869Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 8750..8869 +
1697105167.980041-CDS-S-firma_M_contig960:8749..88691697105167.980041-CDS-S-firma_M_contig960:8749..8869Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 8750..8869 +
1622828796.4870536-CDS-S-firma_M_contig960:9153..92591622828796.4870536-CDS-S-firma_M_contig960:9153..9259Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 9154..9259 +
1697105167.9963915-CDS-S-firma_M_contig960:9153..92591697105167.9963915-CDS-S-firma_M_contig960:9153..9259Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 9154..9259 +
1622828796.4987993-CDS-S-firma_M_contig960:9637..98161622828796.4987993-CDS-S-firma_M_contig960:9637..9816Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 9638..9816 +
1697105168.0058737-CDS-S-firma_M_contig960:9637..98161697105168.0058737-CDS-S-firma_M_contig960:9637..9816Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 9638..9816 +
1622828796.5105464-CDS-S-firma_M_contig960:10096..105821622828796.5105464-CDS-S-firma_M_contig960:10096..10582Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 10097..10582 +
1697105168.0152988-CDS-S-firma_M_contig960:10096..105821697105168.0152988-CDS-S-firma_M_contig960:10096..10582Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig960 10097..10582 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828796.525698-UTR-S-firma_M_contig960:10582..117911622828796.525698-UTR-S-firma_M_contig960:10582..11791Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig960 10583..11791 +
1697105168.025081-UTR-S-firma_M_contig960:10582..117911697105168.025081-UTR-S-firma_M_contig960:10582..11791Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig960 10583..11791 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig960.20598.1prot_S-firma_M_contig960.20598.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig960 5059..10582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig960.20598.1

>prot_S-firma_M_contig960.20598.1 ID=prot_S-firma_M_contig960.20598.1|Name=mRNA_S-firma_M_contig960.20598.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=555bp
MSQGARAVSLAAAKTRSRALLGRNLVPSLLRGEKDAGGSTRTIAMASTSK
EYLMLEDRYNARNYHPLPVVLSKGKGVMVWDVEGKQYFDWLSAYSAVNQG
HCHPKIVEALVSQAQKLTLASRAFSTDCLGEFALYMTAYFGYDRVLPMNT
GVEGGETAIKLARRWGYDVKGVEDNKAHVVFAENNFWGRTLAAVSSSTDP
ESYNGYGPYMPGFSTVPYNDVAALEERLASNPNIVAFMVEPIQGEAGVVV
PDDGYMAKVHDVCRRHKVLLIADEVQTGLCRAGTNLACDHDGVRPDILVL
GKALSGGVYPVSAVLADDEIMLTVKPGQHGSTYGGNPMACRVATAALEVL
REEGMAANACAMGQRLRAGLRSLNAPGVELVRGRGLLNAVVIKDERGDGT
KAWDMCLELKEKGLLAKPTHGKLCREGASGQIGGQVLSALLVPRERALCI
ATHVPRKECCRPDHRTPLSNPRCLERAVGHTRWQERQGLDGGFGFRLQFF
VVAFLRVTVSIRQYNPFVCGAHVVCVWGWTSALARLSGRTRDGTSGRRLW
PRTT*
back to top

mRNA from alignment at S-firma_M_contig960:5059..11791+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig960.20598.1 ID=mRNA_S-firma_M_contig960.20598.1|Name=mRNA_S-firma_M_contig960.20598.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=6733bp|location=Sequence derived from alignment at S-firma_M_contig960:5059..11791+ (Sphaerotrichia firma Sfir_13m male)
ATGTCTCAAGGCGCCCGAGCCGTGTCCCTTGCTGCAGCAAAGACTCGCAG CAGAGCCCTGCTCGGTCGAAACCTGGTGCCGTCGCTCCTGCGAGGGGAGA AGGACGCCGGAGGGAGCACGCGCACGATTGCGATGGCGAGCACGTCGAAG GAATACTTGATGCTAGAAGACAGGTGAGGTTGGCCGGCATATCTTCCAAG GGTCGGCCGTGGGTTTCTGTGTGCAAAGTGAGCATAGGCTCGTGTCCCCT GGAGAGCGAGCGTTTTCTTTCAAAATTAGCTGCTGTCCACGCCAACAAGG AAGTCAGCTGAGGAGCCGGTGTGAGCAGGAATCTTTCGAATTGCCGCGTT GGTCGGTGTAACGGTTACGGTTTCCCGCGCTGTTGACCGCCGTGTCAGCG CCGATCGCTACCGAAGTGCCTCTGCAGTGCTCTGGCTATACGTTACCAGC GATGCAATCCAACAAGATCGAGTGGACTCTCGTCTGAGAATTGCCCGTCT ACAAGAACAGCGTGCGCCGAAAATTCGAAAGGCCCAATACAAAGTGTATC CGCGCGTGGAGGTTGCGCCGCATATCGCGGGCGCTGGTTGACCGCGCGCT GTATTGTGCTACCTGTACACCTCAATGCGGTTCCACGAGAGACTCGTATG TGAGGTGGATACCAAAGAAAGGGTTCTCGTGCACCGCTGTTGCCGTGGCT GCCTGATTCCTCACTTCATTCTTTCCGCCTTTGTACCCCGTGTTCTGTGT TTCGTGTCCGTGTGCGGTGGCTCGCTTCGCCCCCGTCCGCCCGGCCGCCC GCCGCCCGCCACCCGCCTGCTTCCGGTCGGGTTTTTTTTTGGACAACACG GCCAACACAAGGTACAACGCCCGCAACTACCACCCCCTGCCGGTGGTCCT GAGCAAGGGGAAAGGCGTCATGGTGTGGGACGTCGAGGGAAAGCAGTACT TCGACTGGCTCAGCGCCTACTCGGCGGTGAACCAGGTGCGGTGCGCTGGA GTGCGCGCTTTTCCGTTCAAACAAAACAACAAAACCTGGAAAAGGGGGGT CTTTTAGAAGCATCTGCCAGTGCACTTGTACGACAAAAACACGAGAGTGA CACCCCAGGCATCCGGCCTTGCTTTATTCTCTCTATTGTATTGGATTTGC GGGGCCGAGCGCTCGTCTCGTCGTGCAAGCTAGCCTGGCCAACCGGGCCT TCTGCCACGAAGACAATTGCGAAGTCAATCACACAGAAACAGAAAACGCA AGGACAACCCTCCGCGCCGCTCGCTCCAATGACACCCCCAATCCCGCGCC CAACCTACCCGCCAACCAGGGACACTGCCACCCCAAGATCGTGGAGGCCC TTGTGAGCCAGGCACAGAAGCTCACCCTGGCGTCTCGAGCCTTCTCCACG GACTGCCTGGGGGAGTTCGCGCTGTACATGACGGCGTACTTCGGCTACGA CCGCGTGCTGCCCATGGTACGATTGATGCCAATCCTGCTGTTCGCTGACG ATAGGGCGGCAGCGCATAGCGCGCACACACGCGTGGCCTCGCTTTGATAT ATTGCATACCACACGGCACCGGCGCAGCGCTTTACGTTCGGATTTTTTAT TTGCGTTGTGTGGGAAAACCTGCCCGGTGTTGCCTGGTGTGGAAGGTCAC GCGGATCCTTGATGGCATGCCTGTGTTACCGTGGTGGCAGCGGACGTTTT CTTATGGTGTCGGTCAATAATCTAGGTGCCAGGATCCTGCTAATGTTTAC CATGTGTTTAGGTCTTCTATGACAAGCCGTGGGTGCTGTGGCTCTGTCGT TCTTGTCGCCACCCCGAAATGTCTCCGTGTGTTGTTGCTCCTGCTGATCC CGGCTACCTGCTCATCTTGCTGCTTCAAACACGCCTGCTAAGGTTGATGC TCCCGCTTGCCAATCCTGACGACGCCACCGCCGCTGCAACCGCTTCCGCT ATTTCTTTGCTACTGCTGTGTGGGCTTGGGGTTATTTTGCATGTCGCCTT TTTTTTTTGCTGGCCAGAACACGGGGGTGGAGGGGGGAGAAACGGCCATC AAGCTAGCGCGGCGATGGGGATACGACGTCAAGGGTGTTGAGGACGTGAG TGGTTCGCGCTCTTTGTCTTGTTCTTCTTTCTTCTTCCCGCAGACTGGCT AAAATACGATAGCTTCCTTCTTCAATCATACTGTCATCACGTTCCTGTAT CAGTGGCACCCAAAGTTCAAACCGGGTCACGGTTCATGATTGGTACCACC GTTGTTGCCCTTGTCCTAGAGCCTCCCTTTCGGGGTTGGAGGGCGGGCTA TCCATTCTTAAGGCCTTGCGCCCGTTCGACCTCATTCGTCGGCTGCGATG CGAGTGGTCTGAGTGGGCATGCCCTTCTATTGAAAATTCGGAGGGAGGAC TGCTAGTAGCGTTGTTGCAGCACTTCTGTAGTTGATGCGTGCTGGTGCGG GTAACACTCCTCCTACTGCTTCTCTAAGCGACTCAAATAAGTCGTATGCA CTCAGTGAACGCGGCAGCCAATGCACAGTAACTCCCATTCACCCCCTCCC TCTCACGACGTTTTGTACACTACCAGTGGGATGACATGTTTTTGATCTAG AACAAATGGAGGAAACACCTGGTTTCGATTACTATCTCCGCCGCCCGACA CATGCCGCAAAATCCTGCGCGACTCCAAACTACACCGGCACACTATCGCG GTGTATTTTGGGAGAAGCGTAGCAGGCGAAAATGAAGCAGACGATTGTCG TGTGCGCTCGACCCTTTCGGCGATGGCCTCTTTCATACCTTCTCAGAACA AAGCCCACGTCGTGTTCGCGGAGAACAACTTCTGGGGTAGGACGCTGGCG GCCGTGAGCTCCTCGACAGACCCGGAGAGCTACAACGGCTACGGTCCCTA CATGCCAGGCTTTTCCACGGTGAGCGAGCCGCGCGAAGATATCGGCGCTG TTGTGGCGGTGTGGAGCGATTGCTGTTGATGTCGTTGTTCCACGATCCGC CTCGAGGAAGAAAGCAAACGTGGGAACCAAAGGCACGAACACACAAGCCA GCGCCCGATTTCGCCCCCCGAAGTTCTGATTTTGTGATTTCCCCGCTGTC GTCTCCACGCTTGTCGTTTCTGCTGATAGTTGCGTTTGTAGTTGTCCCCC ACTGTCTCCTTGTTTGTTTGTTTTTCGTGTCGGTCGGACTACAAGTGTCT GTGTGGCTCCTTGGGTTCCATGCTACAAAGGATTTCACGGTGTTTTCTGA TGGTACCCGTGTTTGTGCTCTGACATGTGTGTGTGTGTGTTTGCGACTCT CCGTGCTCGCCCGCAATGCCAGGTCCCGTACAACGACGTGGCGGCACTGG AGGAGAGGCTGGCGAGCAACCCGAACATCGTGGCCTTCATGGTGGAGCCC ATCCAGGGGGAGGCAGGGGTGGTCGTTCCCGACGACGGTTACATGGCAAA GGTGACGACCGTGCTGTTTCTCACTGCAAAGTAGGCGCCCCAGCTTAACA CGGAGGGCGTGCTGGTTGGTTCCTTGCTATCCTTACTAACTGTGCTGCTG ATCAAACGTTGTTCCGTGGCAGGCGCGCCACAGTCGTGACCGATACACGT AGACGCCGCTGCCGACAAAGGTGCCATTGCGCTGTCCCACCCTCCCGTTC CCCCGTTTGGTTCGATGTTGGGTTTGACCGAACGAGCGCAGGTGCACGAC GTTTGCCGGCGCCACAAGGTGCTGCTGATCGCCGACGAGGTGCAGACTGG GCTGTGCCGGGCGGGCACCAACCTGGCGTGCGACCACGACGGCGTTCGGC CGGACATTCTCGTGAGATGTGTGGAGTTTTTACCCCCTGCCCCTCCAACG CCCGCCCCCTCCAGAAAGTAGCTTGGGCTTTGGGAATCGCATCACGGTTG GCGGTGCTCCCTCTCGGCCTTAAACGAACCCCGAACCCTAACCGCTACCC TTAGATCTGACGGAAAACAACAATGATAAGCGCGCATGCCGTCTGGTTCT GGCACGACTGCACGTTTCACTCCCCACAGCCCGAACCAAGGAAGGCGTGA CGATTTCTGTGACTCTGGTATGCCCCACCTCCCGCGCGCTCGAAGGTGTT GGGCAAGGCTCTGAGCGGAGGCGTGTACCCGGTTTCGGCGGTCCTCGCGG ATGACGAGATCATGCTCACGGTCAAGCCCGGGCAGCACGGCTCCACGTAC GGTGAGCGCCGACCCTTACCTTTACCCACAGCGCGACTCCGACGCGACCA TTGCCGGCCCTATGCCTAGCATACCACGCGTCAACCATGTTTCGCTTTTG CCCGTTTTGGCGTTTGGCGCTTCGCCTACCCCGTCGCCGTTCATCCCACC ACGAAAGATGGAAAAACAAGCGTTTCGCGCTACGCCTACGCTCTTGCCCT TCATCCTACGACGAAAGCTAGAGAAGTACTTCGTGTGCGGCTCCATCGTG TGGAGCAGGGACGTTGCAGAGCTCCGCCTCGAAAACGAAGGCAACAAACG ACTACTGCGGCAGAGGCAACCAGCAAGCGACCCCGCGCACCCCCCCATGA TGACCCCTATGTTTCCCCTCTCGTTCCAGGCGGCAACCCGATGGCTTGTC GAGTCGCAACGGCGGCACTCGAGGTCCTGCGGGAGGAGGGCATGGCGGCG AACGCGTGCGCCATGGGCCAGCGGCTCCGCGCCGGCCTCCGCTCCCTGAA TGCGCCAGGCGTGGAGTTGGTCCGGGGGCGGGGCCTCCTGAACGCCGTCG TCATTAAGGTAGGAAGGAAGCACTGGGGGGGGGACAAGGGAAGCAGGGAG GGACGGAGAGGGGAAGGAACAGCCAACGGTTTGATTACGGGGAGGCAGCC TGGTATGGTTTTGGGGAATAATTTCAAGACAGAGAGGAGGCATACTACGC ACGCCCTCTAGCTTCCAGCTCTCACGCCAGAGCGCGCGCACGCCCGATCG TGATTCTGAACTAAACGTTCATGCTCTCATGCCGTGGCGTTGTTTTTCGG TTTGTGGAACACGTGGACGAAACGCTAAATGCCTATAGGACGAGCGAGGG GACGGGACCAAGGCGTGGGACATGTGCCTCGAGCTCAAGGAGAAAGGGTT GCTGGCGAAGCCAACTCACGGTAAGCTATGCAGAGAAGGGGCGAGCGGGC AGATTGGAGGGCAGGTGCTCTCTGCCCTCCTTGTCCCTAGGGAAAGGGCG CTCTGTATTGCTACGCACGTACCTAGGAAAGAGTGCTGTAGGCCTGACCA CCGCACGCCCCTTTCGAATCCACGCTGTTTGGAGCGGGCAGTGGGGCACA CGCGGTGGCAGGAGAGGCAGGGTCTAGACGGAGGTTTTGGTTTTCGTCTT CAATTCTTCGTCGTTGCCTTTCTGCGGGTCACGGTGTCAATACGTCAATA CAACCCTTTTGTTTGCGGTGCGCATGTCGTTTGCGTGTGGGGATGGACTT CAGCGCTTGCTCGATTGAGCGGCCGCACTCGCGACGGCACCAGCGGCCGC CGCCTTTGGCCGAGAACAACGTAGACAGCGGTGGAGGTACCAGATGGTAC GCAGCTACTGTCATGCAAAACGACTGCAGCATACTCGCAGGGCTCAACGC CCACTCAGCCACATCATAACCCCTTGCCCGTGTCTCCTTCTCCCTTGCTC TCCCCGTCTCCCGCCAAACCGTTGTTTCCGGGTGGACATGGCTATCCGAC CCGGGTGCTCTCCACCTCAATTCTCGGGATATGTTGTGATTTCGGGGGAA AGGTAACATCATTCGGCTAGCCCCGCCCCTGTGCATCACGGCGGAGCAGA TAGACGAGTCGTTGGACATCATGTCCTCCGTATTCACCAAGGCATGAGTG CGGTAGATGTTTCCGCTGCGGTTTGGTGTTGGCTTGGTTTGTTGGCTGTG GGGTTGGTTGTCGTGTTGCCTGTCAGGTTCATGCGGTGCGAAGGAAGAAC ACGGAGGAGAAACCTGACGTTGGATTCATGGTGATTGAGTCGGGTGAAGT CCCTCTTCCGATGCCACAAGCATAGTCCCACCGATTGATCTACTAAGGCT GGTCAGTGAGGGGATGCGCTGATACGTGGTACGGTGCGGTATATTTTCAG CGGTTGTTGAGACGGGGGGTGATGTATCCGCCAGTTTATTTTCACTTGGG CGTATAGTGTGCATATTATATGTCGGTGGAACCGAACGGTTCCACCAGTT CGTGCGTAGACTACAGTGGAGATGAACCGCGGTCGGTAAGAGGAGGCGGC CGACGCTTCATGCACGTGCTTTGAGTTCGCCGACCCCGCTCGGGAGAAAG AAGCAGCGACAGCGATCGTAACAATGGGCATTGATAGATTAGATCTACGA TATGTTCGTGGTTGGCAGTCATGTGTGCCTCCTTCTCTCTTGTTGCGGGA AGTGGATTGTTTCTGATATTGTGGCGTGTTTGGTTGATGTAGGGCTGTGG TGTGGGTAAAGTTAGGGTTAGAGTTTGTGGTTGGACTTGTGTACCAGGTA CGTTTGTGGATAGCTATTCGAACAGGAAGCGGGATTGGTGACGGCCACTC GTGGTACTTCTACATGTCTGTTGTGTTTCGAAAATAAAAGTCGACATGAT AACTCGTTCTAGCCGAGGGACGAGGAAATTGAGTGACAGCAACAGTATAG TCGTAGAGCCAATAGAGCCAAATAGGCAAGCACGGAAGACAAAGGTTCTT GCAATGCCGCTCAAATTGTTGCGGGAATGTGCC
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig960:5059..11791+

>mRNA_S-firma_M_contig960.20598.1 ID=mRNA_S-firma_M_contig960.20598.1|Name=mRNA_S-firma_M_contig960.20598.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3330bp|location=Sequence derived from alignment at S-firma_M_contig960:5059..11791+ (Sphaerotrichia firma Sfir_13m male)
ATGTCTCAAGGCGCCCGAGCCGTGTCCCTTGCTGCAGCAAAGACTCGCAG
CAGAGCCCTGCTCGGTCGAAACCTGGTGCCGTCGCTCCTGCGAGGGGAGA
AGGACGCCGGAGGGAGCACGCGCACGATTGCGATGGCGAGCACGTCGAAG
GAATACTTGATGCTAGAAGACAGATGTCTCAAGGCGCCCGAGCCGTGTCC
CTTGCTGCAGCAAAGACTCGCAGCAGAGCCCTGCTCGGTCGAAACCTGGT
GCCGTCGCTCCTGCGAGGGGAGAAGGACGCCGGAGGGAGCACGCGCACGA
TTGCGATGGCGAGCACGTCGAAGGAATACTTGATGCTAGAAGACAGGTAC
AACGCCCGCAACTACCACCCCCTGCCGGTGGTCCTGAGCAAGGGGAAAGG
CGTCATGGTGTGGGACGTCGAGGGAAAGCAGTACTTCGACTGGCTCAGCG
CCTACTCGGCGGTGAACCAGGTACAACGCCCGCAACTACCACCCCCTGCC
GGTGGTCCTGAGCAAGGGGAAAGGCGTCATGGTGTGGGACGTCGAGGGAA
AGCAGTACTTCGACTGGCTCAGCGCCTACTCGGCGGTGAACCAGGGACAC
TGCCACCCCAAGATCGTGGAGGCCCTTGTGAGCCAGGCACAGAAGCTCAC
CCTGGCGTCTCGAGCCTTCTCCACGGACTGCCTGGGGGAGTTCGCGCTGT
ACATGACGGCGTACTTCGGCTACGACCGCGTGCTGCCCATGGGACACTGC
CACCCCAAGATCGTGGAGGCCCTTGTGAGCCAGGCACAGAAGCTCACCCT
GGCGTCTCGAGCCTTCTCCACGGACTGCCTGGGGGAGTTCGCGCTGTACA
TGACGGCGTACTTCGGCTACGACCGCGTGCTGCCCATGAACACGGGGGTG
GAGGGGGGAGAAACGGCCATCAAGCTAGCGCGGCGATGGGGATACGACGT
CAAGGGTGTTGAGGACAACACGGGGGTGGAGGGGGGAGAAACGGCCATCA
AGCTAGCGCGGCGATGGGGATACGACGTCAAGGGTGTTGAGGACAACAAA
GCCCACGTCGTGTTCGCGGAGAACAACTTCTGGGGTAGGACGCTGGCGGC
CGTGAGCTCCTCGACAGACCCGGAGAGCTACAACGGCTACGGTCCCTACA
TGCCAGGCTTTTCCACGAACAAAGCCCACGTCGTGTTCGCGGAGAACAAC
TTCTGGGGTAGGACGCTGGCGGCCGTGAGCTCCTCGACAGACCCGGAGAG
CTACAACGGCTACGGTCCCTACATGCCAGGCTTTTCCACGGTCCCGTACA
ACGACGTGGCGGCACTGGAGGAGAGGCTGGCGAGCAACCCGAACATCGTG
GCCTTCATGGTGGAGCCCATCCAGGGGGAGGCAGGGGTGGTCGTTCCCGA
CGACGGTTACATGGCAAAGGTCCCGTACAACGACGTGGCGGCACTGGAGG
AGAGGCTGGCGAGCAACCCGAACATCGTGGCCTTCATGGTGGAGCCCATC
CAGGGGGAGGCAGGGGTGGTCGTTCCCGACGACGGTTACATGGCAAAGGT
GCACGACGTTTGCCGGCGCCACAAGGTGCTGCTGATCGCCGACGAGGTGC
AGACTGGGCTGTGCCGGGCGGGCACCAACCTGGCGTGCGACCACGACGGC
GTTCGGCCGGACATTCTCGTGCACGACGTTTGCCGGCGCCACAAGGTGCT
GCTGATCGCCGACGAGGTGCAGACTGGGCTGTGCCGGGCGGGCACCAACC
TGGCGTGCGACCACGACGGCGTTCGGCCGGACATTCTCGTGTTGGGCAAG
GCTCTGAGCGGAGGCGTGTACCCGGTTTCGGCGGTCCTCGCGGATGACGA
GATCATGCTCACGGTCAAGCCCGGGCAGCACGGCTCCACGTACGGTGTTG
GGCAAGGCTCTGAGCGGAGGCGTGTACCCGGTTTCGGCGGTCCTCGCGGA
TGACGAGATCATGCTCACGGTCAAGCCCGGGCAGCACGGCTCCACGTACG
GCGGCAACCCGATGGCTTGTCGAGTCGCAACGGCGGCACTCGAGGTCCTG
CGGGAGGAGGGCATGGCGGCGAACGCGTGCGCCATGGGCCAGCGGCTCCG
CGCCGGCCTCCGCTCCCTGAATGCGCCAGGCGTGGAGTTGGTCCGGGGGC
GGGGCCTCCTGAACGCCGTCGTCATTAAGGCGGCAACCCGATGGCTTGTC
GAGTCGCAACGGCGGCACTCGAGGTCCTGCGGGAGGAGGGCATGGCGGCG
AACGCGTGCGCCATGGGCCAGCGGCTCCGCGCCGGCCTCCGCTCCCTGAA
TGCGCCAGGCGTGGAGTTGGTCCGGGGGCGGGGCCTCCTGAACGCCGTCG
TCATTAAGGACGAGCGAGGGGACGGGACCAAGGCGTGGGACATGTGCCTC
GAGCTCAAGGAGAAAGGGTTGCTGGCGAAGCCAACTCACGGTAAGCTATG
CAGAGAAGGGGCGAGCGGGCAGATTGGAGGGCAGGTGCTCTCTGCCCTCC
TTGTCCCTAGGGAAAGGGCGCTCTGTATTGCTACGCACGTACCTAGGAAA
GAGTGCTGTAGGCCTGACCACCGCACGCCCCTTTCGAATCCACGCTGTTT
GGAGCGGGCAGTGGGGCACACGCGGTGGCAGGAGAGGCAGGGTCTAGACG
GAGGTTTTGGTTTTCGTCTTCAATTCTTCGTCGTTGCCTTTCTGCGGGTC
ACGGTGTCAATACGTCAATACAACCCTTTTGTTTGCGGTGCGCATGTCGT
TTGCGTGTGGGGATGGACTTCAGCGCTTGCTCGATTGAGCGGCCGCACTC
GCGACGGCACCAGCGGCCGCCGCCTTTGGCCGAGAACAACGTAGGACGAG
CGAGGGGACGGGACCAAGGCGTGGGACATGTGCCTCGAGCTCAAGGAGAA
AGGGTTGCTGGCGAAGCCAACTCACGGTAAGCTATGCAGAGAAGGGGCGA
GCGGGCAGATTGGAGGGCAGGTGCTCTCTGCCCTCCTTGTCCCTAGGGAA
AGGGCGCTCTGTATTGCTACGCACGTACCTAGGAAAGAGTGCTGTAGGCC
TGACCACCGCACGCCCCTTTCGAATCCACGCTGTTTGGAGCGGGCAGTGG
GGCACACGCGGTGGCAGGAGAGGCAGGGTCTAGACGGAGGTTTTGGTTTT
CGTCTTCAATTCTTCGTCGTTGCCTTTCTGCGGGTCACGGTGTCAATACG
TCAATACAACCCTTTTGTTTGCGGTGCGCATGTCGTTTGCGTGTGGGGAT
GGACTTCAGCGCTTGCTCGATTGAGCGGCCGCACTCGCGACGGCACCAGC
GGCCGCCGCCTTTGGCCGAGAACAACGTAG
back to top