mRNA_S-firma_M_contig96.20588.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig96.20588.1
Unique NamemRNA_S-firma_M_contig96.20588.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig96.20588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig96contigS-firma_M_contig96:2378..2800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828794.7653842-CDS-S-firma_M_contig96:2377..28001622828794.7653842-CDS-S-firma_M_contig96:2377..2800Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 2378..2800 +
1697105166.8852553-CDS-S-firma_M_contig96:2377..28001697105166.8852553-CDS-S-firma_M_contig96:2377..2800Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 2378..2800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig96.20588.1prot_S-firma_M_contig96.20588.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig96 2378..2800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig96.20588.1

>prot_S-firma_M_contig96.20588.1 ID=prot_S-firma_M_contig96.20588.1|Name=mRNA_S-firma_M_contig96.20588.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=141bp
PAGGVGKQNDPATAMVITTGIPPPFLSPLEEGDENEEREQEQHCEHDNEA
AESKDWSKDEVEGHGRETSIVREVAGALALKETSVHAGGARKTSFVEEAM
NERVPATSDEQEPEEGTEEERLMGGHREERHRELYLADRKE
back to top

mRNA from alignment at S-firma_M_contig96:2378..2800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig96.20588.1 ID=mRNA_S-firma_M_contig96.20588.1|Name=mRNA_S-firma_M_contig96.20588.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=423bp|location=Sequence derived from alignment at S-firma_M_contig96:2378..2800+ (Sphaerotrichia firma Sfir_13m male)
CCGGCGGGCGGGGTTGGAAAACAAAACGATCCGGCAACGGCAATGGTAAT
CACAACAGGCATACCACCGCCGTTTCTGTCCCCTCTCGAGGAAGGAGACG
AGAACGAAGAACGAGAACAAGAGCAACACTGCGAACACGACAACGAAGCG
GCTGAGAGCAAAGACTGGAGTAAGGATGAAGTCGAGGGCCATGGCCGAGA
AACAAGCATCGTGAGAGAGGTAGCCGGTGCCCTGGCGTTGAAAGAAACGT
CGGTGCATGCAGGCGGGGCACGAAAGACCTCATTCGTCGAAGAAGCGATG
AACGAGCGGGTGCCAGCAACAAGTGACGAGCAAGAGCCGGAGGAAGGAAC
AGAAGAAGAGCGGCTCATGGGCGGCCACCGGGAGGAGCGACACCGCGAAC
TCTACCTCGCCGACAGAAAAGAG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig96:2378..2800+

>mRNA_S-firma_M_contig96.20588.1 ID=mRNA_S-firma_M_contig96.20588.1|Name=mRNA_S-firma_M_contig96.20588.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=846bp|location=Sequence derived from alignment at S-firma_M_contig96:2378..2800+ (Sphaerotrichia firma Sfir_13m male)
CCGGCGGGCGGGGTTGGAAAACAAAACGATCCGGCAACGGCAATGGTAAT
CACAACAGGCATACCACCGCCGTTTCTGTCCCCTCTCGAGGAAGGAGACG
AGAACGAAGAACGAGAACAAGAGCAACACTGCGAACACGACAACGAAGCG
GCTGAGAGCAAAGACTGGAGTAAGGATGAAGTCGAGGGCCATGGCCGAGA
AACAAGCATCGTGAGAGAGGTAGCCGGTGCCCTGGCGTTGAAAGAAACGT
CGGTGCATGCAGGCGGGGCACGAAAGACCTCATTCGTCGAAGAAGCGATG
AACGAGCGGGTGCCAGCAACAAGTGACGAGCAAGAGCCGGAGGAAGGAAC
AGAAGAAGAGCGGCTCATGGGCGGCCACCGGGAGGAGCGACACCGCGAAC
TCTACCTCGCCGACAGAAAAGAGCCGGCGGGCGGGGTTGGAAAACAAAAC
GATCCGGCAACGGCAATGGTAATCACAACAGGCATACCACCGCCGTTTCT
GTCCCCTCTCGAGGAAGGAGACGAGAACGAAGAACGAGAACAAGAGCAAC
ACTGCGAACACGACAACGAAGCGGCTGAGAGCAAAGACTGGAGTAAGGAT
GAAGTCGAGGGCCATGGCCGAGAAACAAGCATCGTGAGAGAGGTAGCCGG
TGCCCTGGCGTTGAAAGAAACGTCGGTGCATGCAGGCGGGGCACGAAAGA
CCTCATTCGTCGAAGAAGCGATGAACGAGCGGGTGCCAGCAACAAGTGAC
GAGCAAGAGCCGGAGGAAGGAACAGAAGAAGAGCGGCTCATGGGCGGCCA
CCGGGAGGAGCGACACCGCGAACTCTACCTCGCCGACAGAAAAGAG
back to top