mRNA_S-firma_M_contig96.20587.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig96.20587.1
Unique NamemRNA_S-firma_M_contig96.20587.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig96.20587.1 vs. uniprot
Match: D8LC07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC07_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 7.250e-11
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 3 
Query: 1818 EESDSSYRRDCAVLAGTAKIVFALLALEHRGVSSRFYRWKRTR 1946
            E++ SSYRRDCAVLAGTAKIVFAL+ALEHR VSSRFYRWKRTR
Sbjct: 1240 EDTGSSYRRDCAVLAGTAKIVFALVALEHRRVSSRFYRWKRTR 1282
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BLAST of mRNA_S-firma_M_contig96.20587.1 vs. uniprot
Match: A0A6H5JIP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP6_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 6.630e-10
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query: 1821 ESDSSYRRDCAVLAGTAKIVFALLALEHRGVSSRFYRWKRTRHRP 1955
            ++ SSYRRDCAVLAGTAKIVFAL+A+EHR VS RFYRWKRTR  P
Sbjct: 1329 DTGSSYRRDCAVLAGTAKIVFALMAVEHRRVSCRFYRWKRTRSSP 1373
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig96.20587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LC07_ECTSI7.250e-1188.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIP6_9PHAE6.630e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig96contigS-firma_M_contig96:621..3373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size2126
Cds size1095
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig96.20587.1prot_S-firma_M_contig96.20587.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig96 705..2426 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828794.8222208-UTR-S-firma_M_contig96:620..7041622828794.8222208-UTR-S-firma_M_contig96:620..704Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig96 621..704 +
1697105166.8943667-UTR-S-firma_M_contig96:620..7041697105166.8943667-UTR-S-firma_M_contig96:620..704Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig96 621..704 +
1622828794.8893154-UTR-S-firma_M_contig96:2426..33731622828794.8893154-UTR-S-firma_M_contig96:2426..3373Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig96 2427..3373 +
1697105166.9435313-UTR-S-firma_M_contig96:2426..33731697105166.9435313-UTR-S-firma_M_contig96:2426..3373Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig96 2427..3373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828794.8408775-CDS-S-firma_M_contig96:704..10791622828794.8408775-CDS-S-firma_M_contig96:704..1079Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 705..1079 +
1697105166.902919-CDS-S-firma_M_contig96:704..10791697105166.902919-CDS-S-firma_M_contig96:704..1079Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 705..1079 +
1622828794.8533685-CDS-S-firma_M_contig96:1384..15451622828794.8533685-CDS-S-firma_M_contig96:1384..1545Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 1385..1545 +
1697105166.912211-CDS-S-firma_M_contig96:1384..15451697105166.912211-CDS-S-firma_M_contig96:1384..1545Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 1385..1545 +
1622828794.8657162-CDS-S-firma_M_contig96:1818..23321622828794.8657162-CDS-S-firma_M_contig96:1818..2332Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 1819..2332 +
1697105166.9252117-CDS-S-firma_M_contig96:1818..23321697105166.9252117-CDS-S-firma_M_contig96:1818..2332Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 1819..2332 +
1622828794.877309-CDS-S-firma_M_contig96:2381..24261622828794.877309-CDS-S-firma_M_contig96:2381..2426Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 2382..2426 +
1697105166.9343483-CDS-S-firma_M_contig96:2381..24261697105166.9343483-CDS-S-firma_M_contig96:2381..2426Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig96 2382..2426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig96.20587.1

>prot_S-firma_M_contig96.20587.1 ID=prot_S-firma_M_contig96.20587.1|Name=mRNA_S-firma_M_contig96.20587.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=365bp
MSSRGISGAATVEPPARRGDELEGLSATSPGETRLAMVCHTPPPLWSGRS
DGQAPPPPPPVPSDETRASPTERQIVEAEQTSRGATRQEGEADCKERPEK
QRTETTTTTDTGNAGHAPKKEVEVEDLERKLHSTKRTLGAFKVALILARH
RPIGRPNHPGDRFAALPAGLPRVALALSRWRTVPHPGGSRKLDLGSRTSG
IPSTTTAGAAPSCEGSIEAPKTTATAAPVATGFFSERSSDTDGREEDSLA
DRARDGTAAQRESNEDSRLVAEKQRLRPPFPPMPPIPPAPRPRTVEPGAP
PSVPAASWDELEQGRSACEGVSLLSLLPNHCSTAAVVGGTTAQAPPLGPN
RAGLENKTIRQRQW*
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mRNA from alignment at S-firma_M_contig96:621..3373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig96.20587.1 ID=mRNA_S-firma_M_contig96.20587.1|Name=mRNA_S-firma_M_contig96.20587.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2753bp|location=Sequence derived from alignment at S-firma_M_contig96:621..3373+ (Sphaerotrichia firma Sfir_13m male)
GGGATTTGTGGTGCTGTCACGGTTGAATCATCAACGAGCCCTGGAGACGA
GCTGCAGGGTCGCCCAGAAACTAGGATCTCTCCAATGTCCTCTCGAGGGA
TTAGTGGTGCTGCCACGGTTGAGCCACCAGCACGCCGTGGGGACGAGCTC
GAGGGCCTTTCAGCAACTTCGCCAGGGGAAACGAGGCTCGCCATGGTGTG
TCACACTCCACCGCCGCTGTGGTCGGGGCGAAGTGATGGCCAAGCGCCGC
CGCCGCCGCCGCCAGTTCCATCGGATGAGACTCGAGCGAGCCCAACCGAG
CGGCAAATCGTGGAGGCAGAGCAGACGTCGCGAGGCGCAACTCGTCAAGA
AGGCGAAGCGGACTGCAAAGAGCGGCCGGAAAAGCAGCGGACAGAAACGA
CGACAACCACCGACACGGGGAACGCGGGCCACGCCCCAAAGAAGGAGGTG
GAGGTGGAGGTATGCACGTACGACTGCTTGCTCGGCCCAAAGTATTTTAA
CGCCTTTTCCCGATTTGTAGTGCTTCGAGGGGGATGATGAACCGAGAGAA
CCGCGCATCGTCCTTGGTCTTTTCGAAAGGCGGTGCGCACTACTGTTGTG
CCAGAGAAAGTTCTGTGCTTGTTCAACCATTCATTCTTGATGCTGCAACC
ATTCATTCTTGATGCTGCAACCATTCTTGATGCTGCCCTCCTACTTTCTC
TTCGCCCGCCTCATGTTTTGTGTCCCGCATGTACTTGCCACCGCATCTCT
CTCCCGTCTCGCAGGACCTTGAGCGTAAGCTGCACAGCACCAAGCGTACG
CTTGGAGCCTTCAAAGTCGCGTTGATTCTTGCGCGGCACCGGCCGATAGG
TCGGCCCAACCACCCCGGCGATCGATTTGCGGCGCTTCCGGCAGGGCTTC
CACGGGTGGCACTTGCTCTCTCGAGGTACGTGCGTGCATGTACTGTACTC
CACCGGGCGGGTCAGCGTGCCGGGGTAGGTGCGGGAGGTTTCAACTCCTC
TGTCCGCTCTGGCCATGTTGGCGTTAGGTTGAAAAAGGCCAGAATGGTTG
GTGTTGCCGAAACGACGGGGGGGGAGAAGTTCCCTTTTTTTTCAGCACAC
ACGCAAGGGGATGAAGGAAGAGCTGAACACCCCCTTCCGAGCCGACGTGT
GAACGGTTTTGAACCAGTGTGTTGGATTGTCGTTTCGCCGGCCTCCAGGT
GGCGGACTGTACCTCATCCCGGGGGTAGTCGCAAGCTTGACCTTGGTTCC
AGAACAAGCGGAATTCCGTCTACTACGACAGCAGGAGCGGCACCTTCGTG
TGAAGGATCGATCGAGGCCCCTAAGACAACGGCAACGGCAGCGCCCGTAG
CGACGGGGTTCTTCTCGGAGCGTTCGAGTGACACCGACGGCAGGGAGGAA
GATTCTCTCGCGGACAGAGCCAGAGACGGCACAGCAGCACAACGAGAAAG
CAACGAAGACAGCCGACTGGTGGCGGAGAAGCAGAGGCTCCGTCCTCCGT
TCCCGCCGATGCCGCCGATACCACCCGCCCCCCGACCACGGACGGTCGAG
CCCGGCGCTCCTCCGAGCGTGCCGGCTGCCTCGTGGGACGAGCTAGAGCA
AGGCAGAAGCGCGTGTGAAGGCGTTTCCCTGCTGTCTTTGCTGCCCAATC
ACTGCAGCACAGCAGCAGTGGTCGGCGGCACAACGGCACAGGCCCCGCCG
TTGGGTCCCAATCGCCGAAGAAAAGAAGGAGAACGGCCGCGAGCTGGGTA
CTGGAGACCGGCGGGCGGGGTTGGAAAACAAAACGATCCGGCAACGGCAA
TGGTAATCACAACAGGCATACCACCGCCGTTTCTGTCCCCTCTCGAGGAA
GGAGACGAGAACGAAGAACGAGAACAAGAGCAACACTGCGAACACGACAA
CGAAGCGGCTGAGAGCAAAGACTGGAGTAAGGATGAAGTCGAGGGCCATG
GCCGAGAAACAAGCATCGTGAGAGAGGTAGCCGGTGCCCTGGCGTTGAAA
GAAACGTCGGTGCATGCAGGCGGGGCACGAAAGACCTCATTCGTCGAAGA
AGCGATGAACGAGCGGGTGCCAGCAACAAGTGACGAGCAAGAGCCGGAGG
AAGGAACAGAAGAAGAGCGGCTCATGGGCGGCCACCGGGAGGAGCGACAC
CGCGAACTCTACCTCGCCGACAGAAAAGAGGAAGCGAACGTCACTTCCCT
TGTTCCAACGGATGACTACGCGGCACAAAATCAGCTATTTATAGAGCTGG
GCGCTGTAGCGGACGACGGCGAAGGGCAGTCCCGCGCATCATGGACCACG
GCGGGCAACGGCGAAGCGGCCGAACGGTTCCGTCAAAGGCATACCGTACC
GCAAACGGGCCAAGAGGCGGGGGCGCTGAATGGCAGGGACGAAGCCCCGA
GATTTGTCGCCGAGAGGGAGGCCGCCGACAGAGAAGAGGACCGAGAGGAA
TCGGACTCGTCGTATCGCAGGGACTGCGCCGTGCTCGCGGGGACAGCGAA
GATCGTGTTCGCGCTGTTGGCGCTGGAACACCGGGGGGTGTCGTCCCGAT
TTTATCGTTGGAAGCGGACACGTCACCGACCGCAGAAAAACCGCAGCAGC
AGCATCGCGGGGTCGACTGGGAACGACCATCCTCTGCCGGACAAGAGACA
GGGCTATCAATAGTAGGTCTGCTGTGTGGTAGTTCACAGATCGCGCGCTG
CGTCCAGCGCACAACCACACCGTTCTTGCATTTATTGCTATACCAATGGC
GAC
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Coding sequence (CDS) from alignment at S-firma_M_contig96:621..3373+

>mRNA_S-firma_M_contig96.20587.1 ID=mRNA_S-firma_M_contig96.20587.1|Name=mRNA_S-firma_M_contig96.20587.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2190bp|location=Sequence derived from alignment at S-firma_M_contig96:621..3373+ (Sphaerotrichia firma Sfir_13m male)
ATGTCCTCTCGAGGGATTAGTGGTGCTGCCACGGTTGAGCCACCAGCACG
CCGTGGGGACGAGCTCGAGGGCCTTTCAGCAACTTCGCCAGGGGAAACGA
GGCTCGCCATGGTGTGTCACACTCCACCGCCGCTGTGGTCGGGGCGAAGT
GATGGCCAAGCGCCGCCGCCGCCGCCGCCAGTTCCATCGGATGAGACTCG
AGCGAGCCCAACCGAGCGGCAAATCGTGGAGGCAGAGCAGACGTCGCGAG
GCGCAACTCGTCAAGAAGGCGAAGCGGACTGCAAAGAGCGGCCGGAAAAG
CAGCGGACAGAAACGACGACAACCACCGACACGGGGAACGCGGGCCACGC
CCCAAAGAAGGAGGTGGAGGTGGAGATGTCCTCTCGAGGGATTAGTGGTG
CTGCCACGGTTGAGCCACCAGCACGCCGTGGGGACGAGCTCGAGGGCCTT
TCAGCAACTTCGCCAGGGGAAACGAGGCTCGCCATGGTGTGTCACACTCC
ACCGCCGCTGTGGTCGGGGCGAAGTGATGGCCAAGCGCCGCCGCCGCCGC
CGCCAGTTCCATCGGATGAGACTCGAGCGAGCCCAACCGAGCGGCAAATC
GTGGAGGCAGAGCAGACGTCGCGAGGCGCAACTCGTCAAGAAGGCGAAGC
GGACTGCAAAGAGCGGCCGGAAAAGCAGCGGACAGAAACGACGACAACCA
CCGACACGGGGAACGCGGGCCACGCCCCAAAGAAGGAGGTGGAGGTGGAG
GACCTTGAGCGTAAGCTGCACAGCACCAAGCGTACGCTTGGAGCCTTCAA
AGTCGCGTTGATTCTTGCGCGGCACCGGCCGATAGGTCGGCCCAACCACC
CCGGCGATCGATTTGCGGCGCTTCCGGCAGGGCTTCCACGGGTGGCACTT
GCTCTCTCGAGGACCTTGAGCGTAAGCTGCACAGCACCAAGCGTACGCTT
GGAGCCTTCAAAGTCGCGTTGATTCTTGCGCGGCACCGGCCGATAGGTCG
GCCCAACCACCCCGGCGATCGATTTGCGGCGCTTCCGGCAGGGCTTCCAC
GGGTGGCACTTGCTCTCTCGAGGTGGCGGACTGTACCTCATCCCGGGGGT
AGTCGCAAGCTTGACCTTGGTTCCAGAACAAGCGGAATTCCGTCTACTAC
GACAGCAGGAGCGGCACCTTCGTGTGAAGGATCGATCGAGGCCCCTAAGA
CAACGGCAACGGCAGCGCCCGTAGCGACGGGGTTCTTCTCGGAGCGTTCG
AGTGACACCGACGGCAGGGAGGAAGATTCTCTCGCGGACAGAGCCAGAGA
CGGCACAGCAGCACAACGAGAAAGCAACGAAGACAGCCGACTGGTGGCGG
AGAAGCAGAGGCTCCGTCCTCCGTTCCCGCCGATGCCGCCGATACCACCC
GCCCCCCGACCACGGACGGTCGAGCCCGGCGCTCCTCCGAGCGTGCCGGC
TGCCTCGTGGGACGAGCTAGAGCAAGGCAGAAGCGCGTGTGAAGGCGTTT
CCCTGCTGTCTTTGCTGCCCAATCACTGCAGCACAGCAGCAGTGGTCGGC
GGCACAACGGCACAGGCCCCGCCGTTGGGTCCCAATGTGGCGGACTGTAC
CTCATCCCGGGGGTAGTCGCAAGCTTGACCTTGGTTCCAGAACAAGCGGA
ATTCCGTCTACTACGACAGCAGGAGCGGCACCTTCGTGTGAAGGATCGAT
CGAGGCCCCTAAGACAACGGCAACGGCAGCGCCCGTAGCGACGGGGTTCT
TCTCGGAGCGTTCGAGTGACACCGACGGCAGGGAGGAAGATTCTCTCGCG
GACAGAGCCAGAGACGGCACAGCAGCACAACGAGAAAGCAACGAAGACAG
CCGACTGGTGGCGGAGAAGCAGAGGCTCCGTCCTCCGTTCCCGCCGATGC
CGCCGATACCACCCGCCCCCCGACCACGGACGGTCGAGCCCGGCGCTCCT
CCGAGCGTGCCGGCTGCCTCGTGGGACGAGCTAGAGCAAGGCAGAAGCGC
GTGTGAAGGCGTTTCCCTGCTGTCTTTGCTGCCCAATCACTGCAGCACAG
CAGCAGTGGTCGGCGGCACAACGGCACAGGCCCCGCCGTTGGGTCCCAAT
CGGGCGGGGTTGGAAAACAAAACGATCCGGCAACGGCAATGGTAACGGGC
GGGGTTGGAAAACAAAACGATCCGGCAACGGCAATGGTAA
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