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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1690 |
| Cds size | 1113 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622828790.2213628-UTR-S-firma_M_contig955:18819..18912 | 1622828790.2213628-UTR-S-firma_M_contig955:18819..18912 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig955 18820..18912 + |
| 1697105164.0329971-UTR-S-firma_M_contig955:18819..18912 | 1697105164.0329971-UTR-S-firma_M_contig955:18819..18912 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig955 18820..18912 + |
| 1622828790.2507894-UTR-S-firma_M_contig955:20025..20082 | 1622828790.2507894-UTR-S-firma_M_contig955:20025..20082 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig955 20026..20082 + |
| 1697105164.0662286-UTR-S-firma_M_contig955:20025..20082 | 1697105164.0662286-UTR-S-firma_M_contig955:20025..20082 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig955 20026..20082 + |
| 1622828790.2629745-UTR-S-firma_M_contig955:20091..20518 | 1622828790.2629745-UTR-S-firma_M_contig955:20091..20518 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig955 20092..20518 + |
| 1697105164.080363-UTR-S-firma_M_contig955:20091..20518 | 1697105164.080363-UTR-S-firma_M_contig955:20091..20518 | Sphaerotrichia firma Sfir_13m male | UTR | S-firma_M_contig955 20092..20518 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622828790.2361095-CDS-S-firma_M_contig955:18912..20025 | 1622828790.2361095-CDS-S-firma_M_contig955:18912..20025 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig955 18913..20025 + |
| 1697105164.0468776-CDS-S-firma_M_contig955:18912..20025 | 1697105164.0468776-CDS-S-firma_M_contig955:18912..20025 | Sphaerotrichia firma Sfir_13m male | CDS | S-firma_M_contig955 18913..20025 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig955.20547.1 >prot_S-firma_M_contig955.20547.1 ID=prot_S-firma_M_contig955.20547.1|Name=mRNA_S-firma_M_contig955.20547.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=371bp
MLELFLRTSGGGHGGLDLGIDCCLESLLPALNTARGINFLDKTAATADLR
VSETRRADELEKALKTGVLERGGQGKGGLEEGNKSHGTRSGNRASTRAVR
KGGERAIKWPSRRCPFASKVEVRQRLALPPTPPTTNPLADRSLSSSAVSN
DRSGAAENGKQNASTSSEHGEVCHLARHDTTPGVYPHMSDSSSAEARSAS
TAKSAASLVSAGGGGAATAPGGVHGDDDSSSFASFSHGSLSSTSLEDGSG
ADGGSNTDSTAATGRKPGEVTAETKKQQAAAAHDDRSVKQAAVAEINRSS
TKVFPLLSFGGKKSNDVEDPGRNDFDEQTSVGNAKTVTAEEKPAGKPAGA
AKPKKGGGGFVSKLFGRGKK* back to topmRNA from alignment at S-firma_M_contig955:18820..20518+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-firma_M_contig955.20547.1 ID=mRNA_S-firma_M_contig955.20547.1|Name=mRNA_S-firma_M_contig955.20547.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1699bp|location=Sequence derived from alignment at S-firma_M_contig955:18820..20518+ (Sphaerotrichia firma Sfir_13m male)
GGGGTTGCAGCCGCTGCTGCTCGGAGGCGGGCAGGAGAGGATGTCCGTAG
AGGATCGATCAACGGACGAGCCAAGAAGGCGGGGGAGGCGCTGATGCTCG
AGCTCTTCCTCCGAACTAGCGGTGGTGGCCACGGGGGGTTAGACTTGGGG
ATAGATTGTTGCCTTGAAAGCCTGCTGCCCGCCCTTAACACGGCACGGGG
TATCAACTTCCTGGACAAGACTGCCGCCACCGCTGACCTTCGTGTAAGCG
AAACGAGGAGAGCGGACGAATTGGAGAAGGCATTGAAGACAGGGGTACTG
GAAAGAGGGGGGCAGGGTAAGGGTGGGCTCGAAGAAGGTAACAAGAGTCA
TGGGACCCGTTCAGGGAACCGAGCATCGACACGCGCAGTCCGAAAGGGTG
GAGAGCGGGCGATCAAGTGGCCAAGCAGGCGGTGTCCCTTCGCGTCCAAG
GTCGAAGTACGGCAACGCTTGGCGCTGCCGCCAACTCCACCGACTACGAA
CCCTCTGGCGGACCGAAGCCTCTCCTCCAGCGCCGTCAGCAATGACCGTT
CAGGCGCAGCAGAAAACGGCAAGCAGAATGCGTCCACCTCGAGCGAACAT
GGTGAGGTGTGTCATCTCGCGAGGCACGACACTACGCCTGGTGTTTACCC
ACACATGTCGGACTCCTCCTCGGCGGAAGCCCGGTCAGCGAGCACCGCAA
AGTCGGCCGCCAGCCTAGTCTCGGCGGGAGGAGGCGGGGCCGCCACCGCG
CCGGGAGGTGTTCACGGGGACGACGATAGCAGCAGTTTCGCCAGTTTTTC
CCATGGTTCGCTCTCGTCTACGTCGTTAGAGGATGGGTCGGGGGCAGATG
GCGGCAGCAATACCGATTCAACGGCGGCGACGGGTCGGAAACCAGGAGAA
GTCACGGCGGAGACGAAAAAGCAACAAGCGGCGGCGGCTCATGATGACAG
GTCTGTAAAACAGGCAGCGGTAGCAGAGATCAACAGAAGCTCTACGAAAG
TGTTCCCCCTTCTAAGCTTTGGGGGCAAAAAGAGCAATGACGTCGAAGAT
CCTGGGAGGAATGACTTCGACGAGCAGACAAGCGTCGGAAACGCAAAAAC
AGTGACAGCCGAAGAGAAGCCCGCGGGGAAGCCAGCGGGAGCGGCGAAAC
CTAAGAAGGGAGGAGGCGGGTTCGTGTCCAAACTGTTCGGGAGAGGAAAA
AAATAAGAGCAGAAGGTTGTTTTAAGTGTACAGTGGGAGAAGAAGCGATT
CAGTTTTGTGCGTGTAGATTAGACTAGTCTACAGGTCTGAAACCCTAGGA
GGGAAGATGGCTACGTACCGAAGTGCTCCCCAAGCACCAAACTTGCTTCC
CGGACCTAGACACCCGCGAAGATCCAGCCTCCTTGTGAAATATCAAGTGC
AGGACTCTATGATAACGTTGTTTCGTGATACTTTATGTTTACGATTTCGT
AGTGTAGACTAGAACCATACCGATTTCCGTGCTGGCATAGTACGCAGAAG
TGCGGTGTAGCTGGTTCTCTTTTCGGTAACAGCTAGCCGCTTGGTACACA
ACTCTGGACAAGGCACTGAAAGGCATTGGTTTGGAACCAACCAGAAGCGA
CCCTGGCGTCTATATATACAACTGGACCAACGGTTTCGCATATTTGACGA
TACACCTCTACGACACTCTAATCACGTCGGCTGAAACGATACTACTCGC back to topCoding sequence (CDS) from alignment at S-firma_M_contig955:18820..20518+ >mRNA_S-firma_M_contig955.20547.1 ID=mRNA_S-firma_M_contig955.20547.1|Name=mRNA_S-firma_M_contig955.20547.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=2226bp|location=Sequence derived from alignment at S-firma_M_contig955:18820..20518+ (Sphaerotrichia firma Sfir_13m male)
ATGCTCGAGCTCTTCCTCCGAACTAGCGGTGGTGGCCACGGGGGGTTAGA
CTTGGGGATAGATTGTTGCCTTGAAAGCCTGCTGCCCGCCCTTAACACGG
CACGGGGTATCAACTTCCTGGACAAGACTGCCGCCACCGCTGACCTTCGT
GTAAGCGAAACGAGGAGAGCGGACGAATTGGAGAAGGCATTGAAGACAGG
GGTACTGGAAAGAGGGGGGCAGGGTAAGGGTGGGCTCGAAGAAGGTAACA
AGAGTCATGGGACCCGTTCAGGGAACCGAGCATCGACACGCGCAGTCCGA
AAGGGTGGAGAGCGGGCGATCAAGTGGCCAAGCAGGCGGTGTCCCTTCGC
GTCCAAGGTCGAAGTACGGCAACGCTTGGCGCTGCCGCCAACTCCACCGA
CTACGAACCCTCTGGCGGACCGAAGCCTCTCCTCCAGCGCCGTCAGCAAT
GACCGTTCAGGCGCAGCAGAAAACGGCAAGCAGAATGCGTCCACCTCGAG
CGAACATGGTGAGGTGTGTCATCTCGCGAGGCACGACACTACGCCTGGTG
TTTACCCACACATGTCGGACTCCTCCTCGGCGGAAGCCCGGTCAGCGAGC
ACCGCAAAGTCGGCCGCCAGCCTAGTCTCGGCGGGAGGAGGCGGGGCCGC
CACCGCGCCGGGAGGTGTTCACGGGGACGACGATAGCAGCAGTTTCGCCA
GTTTTTCCCATGGTTCGCTCTCGTCTACGTCGTTAGAGGATGGGTCGGGG
GCAGATGGCGGCAGCAATACCGATTCAACGGCGGCGACGGGTCGGAAACC
AGGAGAAGTCACGGCGGAGACGAAAAAGCAACAAGCGGCGGCGGCTCATG
ATGACAGGTCTGTAAAACAGGCAGCGGTAGCAGAGATCAACAGAAGCTCT
ACGAAAGTGTTCCCCCTTCTAAGCTTTGGGGGCAAAAAGAGCAATGACGT
CGAAGATCCTGGGAGGAATGACTTCGACGAGCAGACAAGCGTCGGAAACG
CAAAAACAGTGACAGCCGAAGAGAAGCCCGCGGGGAAGCCAGCGGGAGCG
GCGAAACCTAAGAAGGGAGGAGGCGGGTTCGTGTCCAAACTGTTCGGGAG
AGGAAAAAAATAAATGCTCGAGCTCTTCCTCCGAACTAGCGGTGGTGGCC
ACGGGGGGTTAGACTTGGGGATAGATTGTTGCCTTGAAAGCCTGCTGCCC
GCCCTTAACACGGCACGGGGTATCAACTTCCTGGACAAGACTGCCGCCAC
CGCTGACCTTCGTGTAAGCGAAACGAGGAGAGCGGACGAATTGGAGAAGG
CATTGAAGACAGGGGTACTGGAAAGAGGGGGGCAGGGTAAGGGTGGGCTC
GAAGAAGGTAACAAGAGTCATGGGACCCGTTCAGGGAACCGAGCATCGAC
ACGCGCAGTCCGAAAGGGTGGAGAGCGGGCGATCAAGTGGCCAAGCAGGC
GGTGTCCCTTCGCGTCCAAGGTCGAAGTACGGCAACGCTTGGCGCTGCCG
CCAACTCCACCGACTACGAACCCTCTGGCGGACCGAAGCCTCTCCTCCAG
CGCCGTCAGCAATGACCGTTCAGGCGCAGCAGAAAACGGCAAGCAGAATG
CGTCCACCTCGAGCGAACATGGTGAGGTGTGTCATCTCGCGAGGCACGAC
ACTACGCCTGGTGTTTACCCACACATGTCGGACTCCTCCTCGGCGGAAGC
CCGGTCAGCGAGCACCGCAAAGTCGGCCGCCAGCCTAGTCTCGGCGGGAG
GAGGCGGGGCCGCCACCGCGCCGGGAGGTGTTCACGGGGACGACGATAGC
AGCAGTTTCGCCAGTTTTTCCCATGGTTCGCTCTCGTCTACGTCGTTAGA
GGATGGGTCGGGGGCAGATGGCGGCAGCAATACCGATTCAACGGCGGCGA
CGGGTCGGAAACCAGGAGAAGTCACGGCGGAGACGAAAAAGCAACAAGCG
GCGGCGGCTCATGATGACAGGTCTGTAAAACAGGCAGCGGTAGCAGAGAT
CAACAGAAGCTCTACGAAAGTGTTCCCCCTTCTAAGCTTTGGGGGCAAAA
AGAGCAATGACGTCGAAGATCCTGGGAGGAATGACTTCGACGAGCAGACA
AGCGTCGGAAACGCAAAAACAGTGACAGCCGAAGAGAAGCCCGCGGGGAA
GCCAGCGGGAGCGGCGAAACCTAAGAAGGGAGGAGGCGGGTTCGTGTCCA
AACTGTTCGGGAGAGGAAAAAAATAA back to top
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