mRNA_S-firma_M_contig955.20546.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig955.20546.1
Unique NamemRNA_S-firma_M_contig955.20546.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig955.20546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig955contigS-firma_M_contig955:16200..18812 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_000350.1
Exons2
Model size2307
Cds size2304
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828790.1682427-CDS-S-firma_M_contig955:16199..167621622828790.1682427-CDS-S-firma_M_contig955:16199..16762Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig955 16200..16762 +
1697105164.0104537-CDS-S-firma_M_contig955:16199..167621697105164.0104537-CDS-S-firma_M_contig955:16199..16762Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig955 16200..16762 +
1622828790.1828017-CDS-S-firma_M_contig955:17069..188101622828790.1828017-CDS-S-firma_M_contig955:17069..18810Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig955 17070..18810 +
1697105164.0215747-CDS-S-firma_M_contig955:17069..188101697105164.0215747-CDS-S-firma_M_contig955:17069..18810Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig955 17070..18810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig955.20546.1prot_S-firma_M_contig955.20546.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig955 16200..18810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig955.20546.1

>prot_S-firma_M_contig955.20546.1 ID=prot_S-firma_M_contig955.20546.1|Name=mRNA_S-firma_M_contig955.20546.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=768bp
GQTFTDEENGGAEGAAVLQAGDLGRAFGHPAADSSPAATHVVNFIEDNPG
LAWSSSALRGPRRRSVHYLRHARGDDHESRHDEATSASGAEAGRKTAKGK
RRRSKADEDGDEKSAVEGARIRSKKRGEGDRQGGTETVVAVGSEVVSRER
LREEATASSTSAAAVLPDVVGAGGFAEFIPLLDTIFGRVPMSAACVGFPA
RMRESSIRLCQAHLGLTADAAVEACMAATASSLVSTTATATTSITAQPTS
SLSNGRPPALGTATQRDSETGKKRGSQAALSGELKAEELKSHRTNASNDS
RESESRSSSKRSCSSSSSSSAIGAVVRAACLVAAQGLMDPKKEVRLAGAD
LARAALSLCSSVPVAVEEGVGDKEEAETAVVDAAAARRSSATAKKGSTSD
EDHGIVGDDHACGNAAVQGRGSVGSDDGASGYTMSSSEAASDSEDKERPQ
ARAAQSDSARIGSKQEPQGSSPRISVGGSAASPASAEVRAAVPLRDLRWG
LELILACVAPYLTNRDVVSPEKRGERVMPTTAGSAAGSVGDNSGRCSTSA
FTDSGRNAVSTPSEDIAGNALDGTSAEEGEDSGDGCIRYDKEEREELAQS
AGDSPLAKEDEPGEDCQDDADRSLLALRVVDFACRHPDIGPALVSSVLVG
WIPCLAQWGRNTPSSASPDRNHTKIGRVSMPRSPRCAAFTVGEAAASEAL
AAGAIEMIVFMVNNFPLLPLSDFSAETLVAAAEGGMAFAGRTRSTSAGDG
NGRQRDGVGGRRRDGEAT
back to top

mRNA from alignment at S-firma_M_contig955:16200..18812+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig955.20546.1 ID=mRNA_S-firma_M_contig955.20546.1|Name=mRNA_S-firma_M_contig955.20546.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2613bp|location=Sequence derived from alignment at S-firma_M_contig955:16200..18812+ (Sphaerotrichia firma Sfir_13m male)
GGCCAAACATTTACCGACGAGGAAAACGGCGGGGCTGAGGGTGCCGCTGT
CCTCCAAGCTGGAGATCTTGGGAGAGCTTTCGGCCACCCGGCGGCCGACA
GCAGCCCAGCCGCGACTCACGTGGTCAACTTCATCGAAGACAACCCCGGC
CTGGCGTGGAGCTCCTCTGCTCTTCGGGGTCCCAGACGGCGTAGCGTCCA
CTACCTTCGACACGCCCGAGGGGACGACCATGAATCTAGGCACGACGAGG
CCACCAGCGCAAGCGGAGCCGAGGCTGGAAGAAAAACCGCCAAGGGGAAA
CGGCGACGAAGCAAAGCAGACGAGGATGGTGATGAGAAGAGCGCCGTGGA
GGGGGCAAGGATAAGGTCAAAAAAGCGGGGTGAGGGAGACAGGCAAGGTG
GTACTGAGACAGTGGTGGCGGTAGGCTCAGAGGTGGTGTCTAGAGAGCGT
TTGCGGGAGGAAGCGACAGCATCATCGACGTCTGCGGCTGCTGTGCTTCC
GGATGTTGTTGGGGCCGGGGGGTTCGCTGAGTTCATTCCGTTATTGGACA
CGATATTCGGAAGGTAAGGTGCTGTGATTGAGAAGAGGAAACGCTTAACG
TTTGCCACCAACGGCAAGGCGCCGAAAGTACTGATCATGGCAGTGCACGT
ATGCACCGAAGTCCACGGTGCATCGCTCTCTGGTAGCACCACCGTTATGC
GACTTAGCCATTCAAAATACTGATTTTCGCTTGCCCCCTCCCCTTCTAAC
ACTGGTGAAACCAGGGGTGCACTGGTGAAACCAGGGGTGGGGGTGCGTGA
AATTTATCCTCCAATCCAAACAACCCCACCCCCAACAGCTCTAACCCAAC
GTAGGCCTCCTTGTCAACAGGGTGCCCATGAGTGCCGCCTGCGTGGGCTT
TCCAGCGAGAATGCGCGAGTCGTCGATCAGACTCTGCCAGGCGCATCTGG
GCTTGACGGCGGACGCTGCCGTGGAGGCTTGCATGGCCGCCACGGCTAGC
AGTTTGGTCTCAACTACCGCCACAGCAACAACTTCCATCACCGCACAACC
CACCTCTTCGTTGAGTAACGGGCGCCCACCAGCATTGGGAACAGCAACTC
AGCGTGACTCCGAAACCGGAAAAAAACGTGGCTCGCAAGCGGCCCTCTCA
GGGGAGTTAAAGGCGGAGGAACTGAAAAGCCACAGGACCAACGCATCCAA
CGACAGTAGAGAAAGTGAGAGTAGAAGTAGTAGTAAAAGAAGCTGTAGCA
GTAGTAGCAGCAGTAGCGCGATTGGTGCCGTTGTGAGGGCCGCTTGCCTC
GTTGCAGCGCAGGGGTTGATGGACCCGAAGAAAGAAGTGCGCCTTGCCGG
AGCTGACTTGGCGAGAGCGGCCCTCTCGCTGTGCTCTTCGGTACCCGTTG
CCGTCGAGGAAGGGGTTGGGGACAAGGAAGAAGCCGAAACCGCCGTTGTC
GATGCGGCAGCAGCGCGGCGGTCGAGCGCCACCGCCAAGAAGGGAAGCAC
CAGCGACGAAGACCATGGCATCGTCGGTGACGATCATGCTTGCGGCAACG
CCGCCGTTCAAGGCAGGGGAAGCGTCGGAAGCGATGATGGTGCGAGCGGC
TACACGATGAGTAGCAGCGAGGCCGCTAGCGACAGCGAAGACAAAGAGCG
CCCACAGGCAAGAGCAGCCCAGAGTGACTCTGCGAGGATTGGTTCGAAAC
AAGAGCCTCAAGGGAGCTCTCCAAGAATCTCGGTGGGCGGCTCGGCAGCA
AGCCCCGCCTCAGCGGAGGTTCGCGCCGCGGTGCCGTTGAGAGACCTGCG
GTGGGGATTGGAGTTGATTCTCGCGTGCGTGGCCCCGTACTTGACAAACA
GAGACGTGGTATCCCCCGAAAAAAGAGGCGAGAGGGTCATGCCGACAACG
GCCGGGAGTGCCGCCGGCTCCGTCGGCGACAACAGCGGCCGCTGCTCCAC
CAGCGCCTTCACAGACAGCGGCAGAAACGCTGTCTCTACACCAAGCGAAG
ACATTGCAGGGAATGCTCTGGATGGGACGTCGGCGGAAGAAGGGGAAGAC
AGTGGAGATGGATGCATCCGTTACGATAAGGAGGAAAGAGAAGAGCTCGC
GCAATCGGCGGGGGATTCGCCTCTCGCCAAGGAGGACGAACCCGGTGAAG
ATTGCCAAGACGACGCGGATCGTTCCCTGCTTGCGCTCCGCGTCGTCGAC
TTCGCCTGCCGGCACCCTGACATCGGGCCTGCGCTGGTGTCCTCGGTCTT
GGTCGGCTGGATCCCTTGCTTGGCGCAGTGGGGACGCAACACGCCGTCCT
CTGCGTCTCCTGATCGCAACCACACGAAGATTGGTCGAGTTAGCATGCCC
CGAAGCCCCCGATGTGCCGCTTTTACCGTAGGAGAGGCGGCTGCTTCGGA
AGCGCTGGCGGCGGGGGCTATCGAGATGATCGTCTTCATGGTGAACAACT
TCCCACTGCTACCGCTGAGCGATTTTTCGGCGGAAACTCTGGTCGCGGCG
GCGGAGGGTGGTATGGCCTTCGCCGGGCGCACGCGCTCAACCAGTGCTGG
TGACGGGAACGGTAGACAACGGGACGGTGTGGGAGGGCGGAGACGGGATG
GTGAAGCCACGGG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig955:16200..18812+

>mRNA_S-firma_M_contig955.20546.1 ID=mRNA_S-firma_M_contig955.20546.1|Name=mRNA_S-firma_M_contig955.20546.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=4608bp|location=Sequence derived from alignment at S-firma_M_contig955:16200..18812+ (Sphaerotrichia firma Sfir_13m male)
GGCCAAACATTTACCGACGAGGAAAACGGCGGGGCTGAGGGTGCCGCTGT
CCTCCAAGCTGGAGATCTTGGGAGAGCTTTCGGCCACCCGGCGGCCGACA
GCAGCCCAGCCGCGACTCACGTGGTCAACTTCATCGAAGACAACCCCGGC
CTGGCGTGGAGCTCCTCTGCTCTTCGGGGTCCCAGACGGCGTAGCGTCCA
CTACCTTCGACACGCCCGAGGGGACGACCATGAATCTAGGCACGACGAGG
CCACCAGCGCAAGCGGAGCCGAGGCTGGAAGAAAAACCGCCAAGGGGAAA
CGGCGACGAAGCAAAGCAGACGAGGATGGTGATGAGAAGAGCGCCGTGGA
GGGGGCAAGGATAAGGTCAAAAAAGCGGGGTGAGGGAGACAGGCAAGGTG
GTACTGAGACAGTGGTGGCGGTAGGCTCAGAGGTGGTGTCTAGAGAGCGT
TTGCGGGAGGAAGCGACAGCATCATCGACGTCTGCGGCTGCTGTGCTTCC
GGATGTTGTTGGGGCCGGGGGGTTCGCTGAGTTCATTCCGTTATTGGACA
CGATATTCGGAAGGGCCAAACATTTACCGACGAGGAAAACGGCGGGGCTG
AGGGTGCCGCTGTCCTCCAAGCTGGAGATCTTGGGAGAGCTTTCGGCCAC
CCGGCGGCCGACAGCAGCCCAGCCGCGACTCACGTGGTCAACTTCATCGA
AGACAACCCCGGCCTGGCGTGGAGCTCCTCTGCTCTTCGGGGTCCCAGAC
GGCGTAGCGTCCACTACCTTCGACACGCCCGAGGGGACGACCATGAATCT
AGGCACGACGAGGCCACCAGCGCAAGCGGAGCCGAGGCTGGAAGAAAAAC
CGCCAAGGGGAAACGGCGACGAAGCAAAGCAGACGAGGATGGTGATGAGA
AGAGCGCCGTGGAGGGGGCAAGGATAAGGTCAAAAAAGCGGGGTGAGGGA
GACAGGCAAGGTGGTACTGAGACAGTGGTGGCGGTAGGCTCAGAGGTGGT
GTCTAGAGAGCGTTTGCGGGAGGAAGCGACAGCATCATCGACGTCTGCGG
CTGCTGTGCTTCCGGATGTTGTTGGGGCCGGGGGGTTCGCTGAGTTCATT
CCGTTATTGGACACGATATTCGGAAGGGTGCCCATGAGTGCCGCCTGCGT
GGGCTTTCCAGCGAGAATGCGCGAGTCGTCGATCAGACTCTGCCAGGCGC
ATCTGGGCTTGACGGCGGACGCTGCCGTGGAGGCTTGCATGGCCGCCACG
GCTAGCAGTTTGGTCTCAACTACCGCCACAGCAACAACTTCCATCACCGC
ACAACCCACCTCTTCGTTGAGTAACGGGCGCCCACCAGCATTGGGAACAG
CAACTCAGCGTGACTCCGAAACCGGAAAAAAACGTGGCTCGCAAGCGGCC
CTCTCAGGGGAGTTAAAGGCGGAGGAACTGAAAAGCCACAGGACCAACGC
ATCCAACGACAGTAGAGAAAGTGAGAGTAGAAGTAGTAGTAAAAGAAGCT
GTAGCAGTAGTAGCAGCAGTAGCGCGATTGGTGCCGTTGTGAGGGCCGCT
TGCCTCGTTGCAGCGCAGGGGTTGATGGACCCGAAGAAAGAAGTGCGCCT
TGCCGGAGCTGACTTGGCGAGAGCGGCCCTCTCGCTGTGCTCTTCGGTAC
CCGTTGCCGTCGAGGAAGGGGTTGGGGACAAGGAAGAAGCCGAAACCGCC
GTTGTCGATGCGGCAGCAGCGCGGCGGTCGAGCGCCACCGCCAAGAAGGG
AAGCACCAGCGACGAAGACCATGGCATCGTCGGTGACGATCATGCTTGCG
GCAACGCCGCCGTTCAAGGCAGGGGAAGCGTCGGAAGCGATGATGGTGCG
AGCGGCTACACGATGAGTAGCAGCGAGGCCGCTAGCGACAGCGAAGACAA
AGAGCGCCCACAGGCAAGAGCAGCCCAGAGTGACTCTGCGAGGATTGGTT
CGAAACAAGAGCCTCAAGGGAGCTCTCCAAGAATCTCGGTGGGCGGCTCG
GCAGCAAGCCCCGCCTCAGCGGAGGTTCGCGCCGCGGTGCCGTTGAGAGA
CCTGCGGTGGGGATTGGAGTTGATTCTCGCGTGCGTGGCCCCGTACTTGA
CAAACAGAGACGTGGTATCCCCCGAAAAAAGAGGCGAGAGGGTCATGCCG
ACAACGGCCGGGAGTGCCGCCGGCTCCGTCGGCGACAACAGCGGCCGCTG
CTCCACCAGCGCCTTCACAGACAGCGGCAGAAACGCTGTCTCTACACCAA
GCGAAGACATTGCAGGGAATGCTCTGGATGGGACGTCGGCGGAAGAAGGG
GAAGACAGTGGAGATGGATGCATCCGTTACGATAAGGAGGAAAGAGAAGA
GCTCGCGCAATCGGCGGGGGATTCGCCTCTCGCCAAGGAGGACGAACCCG
GTGAAGATTGCCAAGACGACGCGGATCGTTCCCTGCTTGCGCTCCGCGTC
GTCGACTTCGCCTGCCGGCACCCTGACATCGGGCCTGCGCTGGTGTCCTC
GGTCTTGGTCGGCTGGATCCCTTGCTTGGCGCAGTGGGGACGCAACACGC
CGTCCTCTGCGTCTCCTGATCGCAACCACACGAAGATTGGTCGAGTTAGC
ATGCCCCGAAGCCCCCGATGTGCCGCTTTTACCGTAGGAGAGGCGGCTGC
TTCGGAAGCGCTGGCGGCGGGGGCTATCGAGATGATCGTCTTCATGGTGA
ACAACTTCCCACTGCTACCGCTGAGCGATTTTTCGGCGGAAACTCTGGTC
GCGGCGGCGGAGGGTGGTATGGCCTTCGCCGGGCGCACGCGCTCAACCAG
TGCTGGTGACGGGAACGGTAGACAACGGGACGGTGTGGGAGGGCGGAGAC
GGGATGGTGAAGCCACGGGTGCCCATGAGTGCCGCCTGCGTGGGCTTTCC
AGCGAGAATGCGCGAGTCGTCGATCAGACTCTGCCAGGCGCATCTGGGCT
TGACGGCGGACGCTGCCGTGGAGGCTTGCATGGCCGCCACGGCTAGCAGT
TTGGTCTCAACTACCGCCACAGCAACAACTTCCATCACCGCACAACCCAC
CTCTTCGTTGAGTAACGGGCGCCCACCAGCATTGGGAACAGCAACTCAGC
GTGACTCCGAAACCGGAAAAAAACGTGGCTCGCAAGCGGCCCTCTCAGGG
GAGTTAAAGGCGGAGGAACTGAAAAGCCACAGGACCAACGCATCCAACGA
CAGTAGAGAAAGTGAGAGTAGAAGTAGTAGTAAAAGAAGCTGTAGCAGTA
GTAGCAGCAGTAGCGCGATTGGTGCCGTTGTGAGGGCCGCTTGCCTCGTT
GCAGCGCAGGGGTTGATGGACCCGAAGAAAGAAGTGCGCCTTGCCGGAGC
TGACTTGGCGAGAGCGGCCCTCTCGCTGTGCTCTTCGGTACCCGTTGCCG
TCGAGGAAGGGGTTGGGGACAAGGAAGAAGCCGAAACCGCCGTTGTCGAT
GCGGCAGCAGCGCGGCGGTCGAGCGCCACCGCCAAGAAGGGAAGCACCAG
CGACGAAGACCATGGCATCGTCGGTGACGATCATGCTTGCGGCAACGCCG
CCGTTCAAGGCAGGGGAAGCGTCGGAAGCGATGATGGTGCGAGCGGCTAC
ACGATGAGTAGCAGCGAGGCCGCTAGCGACAGCGAAGACAAAGAGCGCCC
ACAGGCAAGAGCAGCCCAGAGTGACTCTGCGAGGATTGGTTCGAAACAAG
AGCCTCAAGGGAGCTCTCCAAGAATCTCGGTGGGCGGCTCGGCAGCAAGC
CCCGCCTCAGCGGAGGTTCGCGCCGCGGTGCCGTTGAGAGACCTGCGGTG
GGGATTGGAGTTGATTCTCGCGTGCGTGGCCCCGTACTTGACAAACAGAG
ACGTGGTATCCCCCGAAAAAAGAGGCGAGAGGGTCATGCCGACAACGGCC
GGGAGTGCCGCCGGCTCCGTCGGCGACAACAGCGGCCGCTGCTCCACCAG
CGCCTTCACAGACAGCGGCAGAAACGCTGTCTCTACACCAAGCGAAGACA
TTGCAGGGAATGCTCTGGATGGGACGTCGGCGGAAGAAGGGGAAGACAGT
GGAGATGGATGCATCCGTTACGATAAGGAGGAAAGAGAAGAGCTCGCGCA
ATCGGCGGGGGATTCGCCTCTCGCCAAGGAGGACGAACCCGGTGAAGATT
GCCAAGACGACGCGGATCGTTCCCTGCTTGCGCTCCGCGTCGTCGACTTC
GCCTGCCGGCACCCTGACATCGGGCCTGCGCTGGTGTCCTCGGTCTTGGT
CGGCTGGATCCCTTGCTTGGCGCAGTGGGGACGCAACACGCCGTCCTCTG
CGTCTCCTGATCGCAACCACACGAAGATTGGTCGAGTTAGCATGCCCCGA
AGCCCCCGATGTGCCGCTTTTACCGTAGGAGAGGCGGCTGCTTCGGAAGC
GCTGGCGGCGGGGGCTATCGAGATGATCGTCTTCATGGTGAACAACTTCC
CACTGCTACCGCTGAGCGATTTTTCGGCGGAAACTCTGGTCGCGGCGGCG
GAGGGTGGTATGGCCTTCGCCGGGCGCACGCGCTCAACCAGTGCTGGTGA
CGGGAACGGTAGACAACGGGACGGTGTGGGAGGGCGGAGACGGGATGGTG
AAGCCACG
back to top