mRNA_S-firma_M_contig9543.20536.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9543.20536.1
Unique NamemRNA_S-firma_M_contig9543.20536.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: D8LTS1_ECTSI (Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTS1_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 4.510e-136
Identity = 214/217 (98.62%), Postives = 215/217 (99.08%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG 651
            L RRFDRGDIYTFTANAILLAVNPFKRLPLY KELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMF+KRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG
Sbjct:   91 LCRRFDRGDIYTFTANAILLAVNPFKRLPLYSKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG 307
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A6H5KDB8_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KDB8_9PHAE)

HSP 1 Score: 411 bits (1057), Expect = 3.040e-134
Identity = 204/217 (94.01%), Postives = 212/217 (97.70%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG 651
            L RRFDRGDIYTFTANAILLA+NPFKRLP+YGKELLTE+F++G MR+QGIEPPQALGPHVFAIADSAYRDMMKG+ AGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGE GVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQA +ERNFHIFYQMCKGGDDEERERWELQG
Sbjct:   40 LCRRFDRGDIYTFTANAILLAINPFKRLPIYGKELLTEHFDVGCMREQGIEPPQALGPHVFAIADSAYRDMMKGMDAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEGGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAHDERNFHIFYQMCKGGDDEERERWELQG 256
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A6H5LBZ3_9PHAE (Myosin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBZ3_9PHAE)

HSP 1 Score: 380 bits (975), Expect = 2.040e-124
Identity = 197/217 (90.78%), Postives = 198/217 (91.24%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG 651
            L RRFDRGDIYTFTANAILLAVNPFKRLPLY KELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMR       G  G E       DRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMF+KRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG
Sbjct:   91 LCRRFDRGDIYTFTANAILLAVNPFKRLPLYSKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMR-------GSCGRE------WDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFNKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG 294
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A835YXT9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT9_9STRA)

HSP 1 Score: 317 bits (812), Expect = 2.520e-96
Identity = 174/252 (69.05%), Postives = 186/252 (73.81%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKS-AGMG-PVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQ---------------------------------SNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQG 651
            L +RF+ G IYTFTANAILLAVNPFK LPLYG +LL EY+  G MRQQGIE    L PHVFAIADSAYRDMM+GIHAG   A MG  VNQSILISGESGAGKTESTK VM+YLT+VGN     ELE+GS+MDRVLQ                                 SNPILEAFGNARTIRNDNSSRFGKFIEL+FDKRG LLGA IETYLLEKVRIP Q+ENERNFHIFYQM KG  DEERERW L+G
Sbjct:  311 LTQRFEMGSIYTFTANAILLAVNPFKSLPLYGLKLLQEYYTEGVMRQQGIETATRLAPHVFAIADSAYRDMMQGIHAGTGGAAMGMSVNQSILISGESGAGKTESTKVVMKYLTSVGNANGITELEEGSVMDRVLQTSMMLRTRVTPNARASARTLIMTPXXXXXCALQSNPILEAFGNARTIRNDNSSRFGKFIELLFDKRGLLLGAAIETYLLEKVRIPNQSENERNFHIFYQMTKGASDEERERWALEG 562
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A482SDW9_9ARCH (Myosin motor domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDW9_9ARCH)

HSP 1 Score: 260 bits (664), Expect = 6.900e-84
Identity = 136/226 (60.18%), Postives = 166/226 (73.45%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHA-----------GKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWEL 645
            L  R+  GDIYT+T   IL+A+NPFK LPLY  E L  Y+N G ++ QGIE    L PHVFAIAD++YR+MM+ +H            G SA +   +QSILISGESGAGKTESTKFV+RYLT+VG+ +   E E+GS+MD+VLQSNPILEAFGNART+R+DNSSRFGKFIEL F KRG+L+G  I TYLLEKVR+P Q   ER+FHIFYQ+  G   E+R  W+L
Sbjct:   20 LQERYTSGDIYTYTG-PILIALNPFKTLPLYSSETLEGYYNHGLLKSQGIELGAPLAPHVFAIADASYREMMRLMHGQGFSRFSSSSNGSSASIVSADQSILISGESGAGKTESTKFVLRYLTSVGSSQ-AEEKERGSVMDKVLQSNPILEAFGNARTLRSDNSSRFGKFIELQFSKRGHLIGGSIRTYLLEKVRLPLQQRGERSFHIFYQLFAGSTAEQRALWQL 243
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A7S2Y0D6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0D6_9STRA)

HSP 1 Score: 270 bits (689), Expect = 8.400e-80
Identity = 147/223 (65.92%), Postives = 174/223 (78.03%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIH----AGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGN--GEDGVE-LEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWELQ 648
            L  R+  G+IYTFT   ILLAVNPF+ LPLY KE+L +Y++ G +R QG+E      PHVF+IAD+AYR M+K +H    A  SAG G  +QSILISGESGAGKTESTKFVMRYL  VGN  G  G+  + KGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIEL FD+RG+L+GA I+TYLLEKVR+P  A+NERNFH+FYQ+CKG   E +E+  L+
Sbjct:   91 LSERYKTGEIYTFTG-PILLAVNPFQDLPLYTKEVLEQYYSNGMLRAQGLEV-SIDAPHVFSIADAAYRAMVKAMHTRGTAAPSAGGGNGSQSILISGESGAGKTESTKFVMRYLIAVGNPEGTAGIAAVTKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELKFDRRGHLMGASIQTYLLEKVRLPRHAKNERNFHVFYQLCKGAPPELQEQLGLE 311
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A7S4DA52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA52_HETAK)

HSP 1 Score: 257 bits (656), Expect = 1.880e-77
Identity = 139/217 (64.06%), Postives = 160/217 (73.73%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGI-------------HAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKG 612
            L  R++ G+IYTFT   ILLAVNPFK LPLY  E+L EY+  G +R QG+E      PHV++IAD+AYR+MMK I               G   G G  +QSILISGESGAGKTESTK VMRYLT VGN E    +  GSIMD+VLQSNPILEAFGNARTIRNDNSSRFGKFIEL FD+RG+LLGA + TYLLEKVR+P+Q   ER+FHIFYQ+CKG
Sbjct:   89 LSERYEEGEIYTFTG-PILLAVNPFKDLPLYTNEILEEYYTNGMLRGQGLEVVSE-APHVYSIADAAYREMMKTIMNISGAPRRVPKQKEGSFGGDG--SQSILISGESGAGKTESTKIVMRYLTAVGNPEGITAVAAGSIMDKVLQSNPILEAFGNARTIRNDNSSRFGKFIELRFDRRGHLLGAALRTYLLEKVRLPSQGPGERSFHIFYQLCKG 301
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: A0A7S3HSJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSJ7_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.260e-74
Identity = 126/198 (63.64%), Postives = 149/198 (75.25%), Query Frame = 1 
Query:   79 RLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAG-----------MGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERW 639
            R+PLY  ++L  Y+N G ++ QGIE    L PHV+AIAD+AYR+MM+ I +G  A              P N SILISGESGAGKTESTK V+RYLTTVGN    + +E GS+MD+VLQSNPILEAFGNART+RNDNSSRFGKFIEL F+KRG+L+G  I TYLLEKVR+PTQ   ERNFHIFYQ+  GG +EERERW
Sbjct:    1 RVPLYTNQILEVYYNEGLLKSQGIESGNHLPPHVYAIADAAYREMMRVIMSGFGAHGSTSSKSPHSTQAPANHSILISGESGAGKTESTKIVLRYLTTVGNSTGDMNVESGSVMDKVLQSNPILEAFGNARTLRNDNSSRFGKFIELSFNKRGHLIGGVIRTYLLEKVRLPTQQRGERNFHIFYQLAAGGSEEERERW 198
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: F0XZB9_AURAN (Myosin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZB9_AURAN)

HSP 1 Score: 245 bits (625), Expect = 4.240e-72
Identity = 127/199 (63.82%), Postives = 152/199 (76.38%), Query Frame = 1 
Query:    7 RRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQM 603
            RR++ G IYTF   AIL+AVNPF+RL LY +E+L  Y+N G +R QGIE  + L PHV+ IAD+AYRDM   I  G +A  G  +QS+LISGESGAGKTE+TK VMRYLT VG G DG       IM++VLQSNPILEAFGNART+RNDNSSRFGKFIEL FD RG + GA ++TYLLEK+R+P  A  ERNFH+FYQ+
Sbjct:    2 RRYEAGSIYTFNG-AILIAVNPFQRLQLYTEEILESYYNDGLLRSQGIEGKR-LAPHVYTIADAAYRDMATAILGGAAA-QGGASQSVLISGESGAGKTETTKIVMRYLTVVGKGGDG---SNAVIMEKVLQSNPILEAFGNARTVRNDNSSRFGKFIELKFDDRGAMRGAAVDTYLLEKIRLPRHAAGERNFHVFYQL 194
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BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Match: K3X6F0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6F0_GLOUD)

HSP 1 Score: 238 bits (607), Expect = 8.340e-69
Identity = 124/215 (57.67%), Postives = 158/215 (73.49%), Query Frame = 1 
Query:    1 LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGIEPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGKTESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRNDNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQMCKGGDDEERERWEL 645
            L  RF   +IYT T   ILLA+NPFK + +Y  +++ +Y   G  R  G E P  + PHVF+IAD AYR +M  +   KS+  G  NQSIL+SGESGAGKTESTKFVM+YL T+   + G E + G++M +VL SNPILE+FGNARTIRNDNSSRFGKFI++ F +RGNL+GA I+TYLLEKVR+  QAE+ERN+HIFY++  G   EE+ERW+L
Sbjct:   94 LNERFKISEIYTLTGE-ILLAINPFKDIGIYSDKIMRKYIRNGDKRDLGNEVPD-MPPHVFSIADKAYRSLMSPLT--KSSHGGQSNQSILVSGESGAGKTESTKFVMQYLATISQAQKGSE-DDGNVMKQVLSSNPILESFGNARTIRNDNSSRFGKFIKMQFSERGNLIGASIQTYLLEKVRLAYQAESERNYHIFYEIIAGASSEEKERWKL 303
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9543.20536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTS1_ECTSI4.510e-13698.62Myosin D n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5KDB8_9PHAE3.040e-13494.01Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A6H5LBZ3_9PHAE2.040e-12490.78Myosin motor domain-containing protein n=1 Tax=Ect... [more]
A0A835YXT9_9STRA2.520e-9669.05P-loop containing nucleoside triphosphate hydrolas... [more]
A0A482SDW9_9ARCH6.900e-8460.18Myosin motor domain-containing protein n=1 Tax=arc... [more]
A0A7S2Y0D6_9STRA8.400e-8065.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4DA52_HETAK1.880e-7764.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3HSJ7_9STRA1.260e-7463.64Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0XZB9_AURAN4.240e-7263.82Myosin motor domain-containing protein (Fragment) ... [more]
K3X6F0_GLOUD8.340e-6957.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9543contigS-firma_M_contig9543:296..3955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score430.3
Seed ortholog evalue5.5e-118
Seed eggNOG ortholog2880.D8LTS1
KEGG koko:K10357
GOsGO:0000146,GO:0000166,GO:0000278,GO:0000281,GO:0000302,GO:0000910,GO:0001891,GO:0001931,GO:0003674,GO:0003774,GO:0003779,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005829,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006935,GO:0006950,GO:0006970,GO:0006971,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007033,GO:0007049,GO:0007154,GO:0008064,GO:0008092,GO:0008104,GO:0008144,GO:0008150,GO:0008360,GO:0009267,GO:0009581,GO:0009582,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010639,GO:0014070,GO:0014074,GO:0015629,GO:0016020,GO:0016043,GO:0016050,GO:0016459,GO:0016460,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022402,GO:0022603,GO:0022604,GO:0022607,GO:0030029,GO:0030030,GO:0030031,GO:0030036,GO:0030038,GO:0030048,GO:0030139,GO:0030554,GO:0030587,GO:0030832,GO:0030833,GO:0030837,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030898,GO:0031033,GO:0031034,GO:0031152,GO:0031154,GO:0031254,GO:0031268,GO:0031270,GO:0031333,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032060,GO:0032153,GO:0032155,GO:0032271,GO:0032272,GO:0032502,GO:0032535,GO:0032553,GO:0032555,GO:0032559,GO:0032796,GO:0032956,GO:0032970,GO:0032982,GO:0032991,GO:0033036,GO:0033043,GO:0033275,GO:0033298,GO:0033554,GO:0034461,GO:0034622,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042493,GO:0042542,GO:0042594,GO:0042623,GO:0042641,GO:0042802,GO:0042803,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044459,GO:0044464,GO:0044764,GO:0044877,GO:0045177,GO:0045179,GO:0045335,GO:0046677,GO:0046683,GO:0046847,GO:0046983,GO:0048519,GO:0048523,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0050982,GO:0051015,GO:0051017,GO:0051128,GO:0051129,GO:0051179,GO:0051301,GO:0051493,GO:0051494,GO:0051591,GO:0051606,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0060327,GO:0060328,GO:0061572,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070252,GO:0070938,GO:0071496,GO:0071840,GO:0071889,GO:0071944,GO:0090066,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568,GO:0099738,GO:0110053,GO:0120025,GO:0120031,GO:0120036,GO:1901265,GO:1901363,GO:1901698,GO:1901700,GO:1902903,GO:1902904,GO:1903047,GO:1990753
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size651
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9543.20536.1prot_S-firma_M_contig9543.20536.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9543 296..3955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828789.6381435-CDS-S-firma_M_contig9543:295..5141622828789.6381435-CDS-S-firma_M_contig9543:295..514Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 296..514 +
1697105163.7872632-CDS-S-firma_M_contig9543:295..5141697105163.7872632-CDS-S-firma_M_contig9543:295..514Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 296..514 +
1622828789.650428-CDS-S-firma_M_contig9543:1452..15591622828789.650428-CDS-S-firma_M_contig9543:1452..1559Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 1453..1559 +
1697105163.8018973-CDS-S-firma_M_contig9543:1452..15591697105163.8018973-CDS-S-firma_M_contig9543:1452..1559Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 1453..1559 +
1622828789.6671035-CDS-S-firma_M_contig9543:2971..31911622828789.6671035-CDS-S-firma_M_contig9543:2971..3191Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 2972..3191 +
1697105163.8120239-CDS-S-firma_M_contig9543:2971..31911697105163.8120239-CDS-S-firma_M_contig9543:2971..3191Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 2972..3191 +
1622828789.6796339-CDS-S-firma_M_contig9543:3850..39551622828789.6796339-CDS-S-firma_M_contig9543:3850..3955Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 3851..3955 +
1697105163.8201559-CDS-S-firma_M_contig9543:3850..39551697105163.8201559-CDS-S-firma_M_contig9543:3850..3955Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9543 3851..3955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9543.20536.1

>prot_S-firma_M_contig9543.20536.1 ID=prot_S-firma_M_contig9543.20536.1|Name=mRNA_S-firma_M_contig9543.20536.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=217bp
LGRRFDRGDIYTFTANAILLAVNPFKRLPLYGKELLTEYFNMGYMRQQGI
EPPQALGPHVFAIADSAYRDMMKGIHAGKSAGMGPVNQSILISGESGAGK
TESTKFVMRYLTTVGNGEDGVELEKGSIMDRVLQSNPILEAFGNARTIRN
DNSSRFGKFIELMFDKRGNLLGAGIETYLLEKVRIPTQAENERNFHIFYQ
MCKGGDDEERERWELQG
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mRNA from alignment at S-firma_M_contig9543:296..3955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9543.20536.1 ID=mRNA_S-firma_M_contig9543.20536.1|Name=mRNA_S-firma_M_contig9543.20536.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3660bp|location=Sequence derived from alignment at S-firma_M_contig9543:296..3955+ (Sphaerotrichia firma Sfir_13m male)
CTTGGCAGGCGTTTCGACCGGGGAGACATCTACACCTTCACGGCGAACGC
CATCCTGCTGGCGGTGAACCCCTTCAAGCGGCTGCCGCTGTACGGCAAGG
AGCTGCTGACGGAGTACTTCAACATGGGCTACATGCGGCAGCAGGGGATC
GAGCCCCCGCAGGCCCTCGGCCCGCACGTATTCGCCATCGCCGACTCGGC
CTACCGTGACATGATGAAGGTGCGGTGCGGTACGGTACGGTGCGGTGCGG
CGCCCGCCCCGCCGCGCCCTTCCTCCCTCGTTGGTTCGTTCGTTCCGTTC
GCGGTGCTGGTTTGGTGATTGATGCGGTGCGACGCGACGCTTGCTGCTGT
TTTCGGTTCTTGTCGATAGGTGTAGGTTTGCCCCCTGCTGGCTTGACGCG
GTGAGGGTGAGGGTGCGTTTGCGGCGCTGGTGCAGTGTGGTGGCCGGCGG
CGGCGGTGATGTGATGTGATAATTGTTGTTGTTTGTTGTCCATGTGTATG
TATGTATGTGTGCCCTGATCTCGGGGCGATTGGGCCGACCTTATTCGCTC
TCGCGCCGCCCGCGGAATTCACGTGGCGGCGGGCTCCCGTGGGCCGGGTA
CGCAAGAAAAAGCTAACTTTATAGTATGGGAAATAGAGTAGGGGGCTCCG
TCACCCTATAACCCTGACCCCCAGAACCAAAACACAATGAGCAAATACTC
CGTATACTGGATAAAGCATGGAAATCGGGAAAATAAAACGGCGTAGACTA
CCGGCTCCCTTCGCGGTCGATGCTGCACGCTCGTGGAAAGATGATAAAAT
TCTAGTAAAATTCTCCCCCGGAACCCCCGAAAGGGGTCTGGCTTCTTCGG
GCCCAGACAGCAGTTTCAACCTCTGAAAAAGTCGTGAGAAGAATTCTGAT
CCGAAGACAGCAGTTCCAAGTTGCGAGAAAGTCGTGAGAGAGTAATTCTG
ATCGAAGACCGGGGCGAAGATGTTGTAACAGTAAAACAAGGAAAACCTGC
GAATTGTCTGTCTTTCAGGGAATATAACTCTGATCGAAGACAGCAGTTTC
CAGCTCTGAGAGGTCGTGAGAGAGTAATTCTGATCGAAGACCGGGGCGAA
GATGTTGTATCATAACAAAAGTTAATCGAACGAACCTGCGTGATGTCTGT
TGTTCAGGGGATCCACGCGGGGAAGTCGGCGGGGATGGGGCCGGTGAACC
AGTCGATCCTGATCTCCGGAGAAAGCGGTGCCGGGAAGACGGAGAGCACC
AAGTTCGTCATGAGGTATGATCCACATATACAGCAGCAGGTTATTTAGCT
GGGGTGTTTCGTTCTGTTGTTTTCTCTGTCGGTGGTGAGTGAGCACCAGG
ATGTCAGCCAAGTCACCGCTACAGCAGCAGGAGTATTTCCTTTTTTCGGG
TGCAAGGTGCCTAGGTGTTTGGAGGCAAAGTGGTGGAGGGTGACTCGGTC
TGGGAGCAAAGCGCGAATAAATAAAATAATATATATATGCGTGTGTGTAA
ATGCCACCACAGAACGGCTCGTAGAAAGTGACGCATGAATGACCCGCTTC
CGTAGATCCCGTCCGCGGGGTGTTTCTCAGGTCAGAGCCAGCAGCCTTGC
GTTTCAGTGTGGAACCTTCCGAGGAGCGTTTCCCCTTGCAAGTACAACGC
TCCCCGTGCTGTCTCTCTACACACACACACAGAACCTTGCCCGTTGGCTC
TCTCCGTATAGAGAGCCATCTCCGTATAGAGGACGTCGTGTGACCTCACA
CGGCGTTAGACACAAAACCTGTTGAACCTGGAGGGAACCCCCTGTCACAT
GTGTTTTTATATTTATTTTTTATTTTTTTTGGTTTTGGGGAGACAATATA
GGGGTCTGCTGTGGTCTAGCCTCCGCCGTACCGGCTGCAGGCCATCCACG
CGTTGGCCTGGGGATACCCCGCCATCCCTCCCCCTCCCTCTCCGCGGTAC
TGCTGTACGCTCGACACAAACGCCTCCTCCGCAAACACGTGCAGCGCAAC
ATCGACTCCTGCTGTGCTGTGGTGCCGGATATGGTAGAGATTACAGATTT
CCTTGTCATGTCTTGCCGTGAACATGCCCACCCGCCTCCCGCTCCCCCCC
TCCTCTTGTCACAGCACACGCATCGACAACAGCGCCTCCTGCGCGCCACC
CGAAACCCACCCAGAACCCCTACCCTACCCTACCCTACCCAAGGGTGGCT
TTCTGGCAATTTTCTGCATCCTTTTATGCTGCGTCGTTCAAGCGCGGCAA
ACTCGAGCCACCCGTAGAGGCGCACGCCTTCCTGTAGAGGCGAACGCCTT
CCGGCCGCCACCCTTGGGGTCTGTCTGTCTTCCCCCACTCCGCCGCCACC
GCCAGCCGCGATGACGTCTGTGCCAAAAGGGGGAAGTAAAACCTCGCTAC
AAAGGCGGTTGTTGGAGAGGACGCGAGGGGAGGGGTCTCTCGGGGGCCCC
GTAGACGCCGAGCACGCCTTGCGCTGACCTGGGAGCCCAGGCACGAGACC
ACGCCACCATCGACCCCCCCAACAGCTGCAAAGGGGGCCAACACCACCAG
CGGCTCCCCCAACAGCTGCGAAGGGGGCCCAACAGCTGCGAACGGGGGTG
TCTGTCCGACGTCCGACCCTCTAACCCTAAACCTAACCCTAACCCTAAAC
CCTTAACCCTATGTCTCTACCCCCAGGTACCTGACGACGGTGGGCAACGG
GGAGGACGGGGTCGAGCTCGAGAAGGGCTCCATCATGGACAGGGTGCTGC
AGAGCAACCCCATCCTCGAGGCGTTCGGCAACGCCCGGACCATCCGGAAC
GACAACTCGTCGCGGTTCGGGAAGTTCATCGAGCTCATGTTCGACAAGCG
GGGGAACCTCTTGGGCGCCGGGATCGAGACCTACCTCCTCGAGAAGGTAA
GCGCGGGCGCGGGGGTGGGGGTGGGGGTGGGGGTGGTGTTGTTGTTGTTT
GGTTGTTGCTGTTGTTGTTTGGTTGTTGCTGTTGTTGGTGGTGGTGTTTG
TTGTTGTTGTTGGTGGTGGTGGTGGTGGTCGTGGTGGTGGTGGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTATGATTGTGGTGGTTGTTGTTGTTGTTG
TTGGTGGTGGTGGTTGTTGTTGTTGTGGTTGTTGTTGTGGTTGTAGCACA
GAATGGATTTGTTTTGTGCTGGTTGTTGGTGGCGGTTCTGGTTGTATGTA
GTACGGAGTGGATTTGTCTGTGCTGGCTGTTGGTTGTTGGTTGTTGTCAG
CATGGACTCGACTTGCTTGCCAATCACCGCCGCTAGACTTCCACTCTTCG
GCCGCACAGAGCAACAGCAGTCATTCGACGACGGACGACGTCACCCCACT
CCGTCAATCTCCATCTCCTCTCTCATCTCTGCTGATTCTGAGAACCTAAA
TAAACCACCTCCCCGTCAGTCTCCATCTCCTCTCTCAGCCCTGCTGATTC
TGAGTACATGTACCTAATAAACCACCACCCCAACGGCCTCGGTACTGCTG
TACGGCGGTACTGTTCTGTCGTATCATACGGTACTGTCGTTTTCTGTCCA
ATCAGGTGCGCATCCCCACCCAGGCCGAGAACGAACGGAACTTCCACATC
TTCTACCAGATGTGCAAGGGCGGCGACGACGAGGAGCGAGAGCGCTGGGA
GTTGCAAGGT
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Coding sequence (CDS) from alignment at S-firma_M_contig9543:296..3955+

>mRNA_S-firma_M_contig9543.20536.1 ID=mRNA_S-firma_M_contig9543.20536.1|Name=mRNA_S-firma_M_contig9543.20536.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1302bp|location=Sequence derived from alignment at S-firma_M_contig9543:296..3955+ (Sphaerotrichia firma Sfir_13m male)
CTTGGCAGGCGTTTCGACCGGGGAGACATCTACACCTTCACGGCGAACGC
CATCCTGCTGGCGGTGAACCCCTTCAAGCGGCTGCCGCTGTACGGCAAGG
AGCTGCTGACGGAGTACTTCAACATGGGCTACATGCGGCAGCAGGGGATC
GAGCCCCCGCAGGCCCTCGGCCCGCACGTATTCGCCATCGCCGACTCGGC
CTACCGTGACATGATGAAGCTTGGCAGGCGTTTCGACCGGGGAGACATCT
ACACCTTCACGGCGAACGCCATCCTGCTGGCGGTGAACCCCTTCAAGCGG
CTGCCGCTGTACGGCAAGGAGCTGCTGACGGAGTACTTCAACATGGGCTA
CATGCGGCAGCAGGGGATCGAGCCCCCGCAGGCCCTCGGCCCGCACGTAT
TCGCCATCGCCGACTCGGCCTACCGTGACATGATGAAGGGGATCCACGCG
GGGAAGTCGGCGGGGATGGGGCCGGTGAACCAGTCGATCCTGATCTCCGG
AGAAAGCGGTGCCGGGAAGACGGAGAGCACCAAGTTCGTCATGAGGGGAT
CCACGCGGGGAAGTCGGCGGGGATGGGGCCGGTGAACCAGTCGATCCTGA
TCTCCGGAGAAAGCGGTGCCGGGAAGACGGAGAGCACCAAGTTCGTCATG
AGGTACCTGACGACGGTGGGCAACGGGGAGGACGGGGTCGAGCTCGAGAA
GGGCTCCATCATGGACAGGGTGCTGCAGAGCAACCCCATCCTCGAGGCGT
TCGGCAACGCCCGGACCATCCGGAACGACAACTCGTCGCGGTTCGGGAAG
TTCATCGAGCTCATGTTCGACAAGCGGGGGAACCTCTTGGGCGCCGGGAT
CGAGACCTACCTCCTCGAGAAGGTACCTGACGACGGTGGGCAACGGGGAG
GACGGGGTCGAGCTCGAGAAGGGCTCCATCATGGACAGGGTGCTGCAGAG
CAACCCCATCCTCGAGGCGTTCGGCAACGCCCGGACCATCCGGAACGACA
ACTCGTCGCGGTTCGGGAAGTTCATCGAGCTCATGTTCGACAAGCGGGGG
AACCTCTTGGGCGCCGGGATCGAGACCTACCTCCTCGAGAAGGTGCGCAT
CCCCACCCAGGCCGAGAACGAACGGAACTTCCACATCTTCTACCAGATGT
GCAAGGGCGGCGACGACGAGGAGCGAGAGCGCTGGGAGTTGCAAGGTGTG
CGCATCCCCACCCAGGCCGAGAACGAACGGAACTTCCACATCTTCTACCA
GATGTGCAAGGGCGGCGACGACGAGGAGCGAGAGCGCTGGGAGTTGCAAG
GT
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