mRNA_S-firma_M_contig954.20531.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig954.20531.1
Unique NamemRNA_S-firma_M_contig954.20531.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig954.20531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig954contigS-firma_M_contig954:17264..17767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size506
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.844575-UTR-S-firma_M_contig954:17263..174581622828788.844575-UTR-S-firma_M_contig954:17263..17458Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig954 17264..17458 +
1697105163.2426603-UTR-S-firma_M_contig954:17263..174581697105163.2426603-UTR-S-firma_M_contig954:17263..17458Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig954 17264..17458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.8587534-CDS-S-firma_M_contig954:17458..177671622828788.8587534-CDS-S-firma_M_contig954:17458..17767Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 17459..17767 +
1697105163.2509236-CDS-S-firma_M_contig954:17458..177671697105163.2509236-CDS-S-firma_M_contig954:17458..17767Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 17459..17767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig954.20531.1prot_S-firma_M_contig954.20531.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig954 17459..17767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig954.20531.1

>prot_S-firma_M_contig954.20531.1 ID=prot_S-firma_M_contig954.20531.1|Name=mRNA_S-firma_M_contig954.20531.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=103bp
MGPVGQTTGTLMGGKKKKKCARGDLVHEMVYFGVHPIPVICPKTRRTETL
SLLPPPTVLPVLLLPMFPARCSSCVAAQEGTGKALSAGLCPTGRPCVPDC
RRC
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mRNA from alignment at S-firma_M_contig954:17264..17767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig954.20531.1 ID=mRNA_S-firma_M_contig954.20531.1|Name=mRNA_S-firma_M_contig954.20531.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=504bp|location=Sequence derived from alignment at S-firma_M_contig954:17264..17767+ (Sphaerotrichia firma Sfir_13m male)
GGGAGATAAGACATACTCATACTTGTAGACAGACGGGGGGGGGCGTTCGG
CGGTTCTGCGGAAGAACTGACTCGGTGACGAGCGTAAGAAATGGCTGCCG
CAGCGTTCATTCACCCTTGGTGTGCACTTTTTGACACGAAGAACGTGGGT
GCGACCCTTTACAGCGGTAACTAGTCTAGCCAGTCGAAGTGGAGGATGGG
GCCAGTGGGGCAGACGACAGGAACACTAATGGGAGGAAAAAAAAAAAAAA
AGTGCGCCAGAGGGGATCTCGTTCATGAGATGGTGTATTTTGGGGTGCAT
CCCATCCCTGTGATTTGTCCTAAAACACGCCGCACCGAAACGCTCTCCCT
TCTCCCCCCCCCTACCGTGCTCCCGGTTTTGCTGCTGCCGATGTTCCCTG
CTCGCTGTTCGTCTTGCGTCGCAGCTCAAGAAGGCACAGGGAAAGCACTA
AGTGCTGGTTTGTGCCCCACGGGTAGGCCGTGCGTGCCTGACTGCCGCCG
CTGC
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Coding sequence (CDS) from alignment at S-firma_M_contig954:17264..17767+

>mRNA_S-firma_M_contig954.20531.1 ID=mRNA_S-firma_M_contig954.20531.1|Name=mRNA_S-firma_M_contig954.20531.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=618bp|location=Sequence derived from alignment at S-firma_M_contig954:17264..17767+ (Sphaerotrichia firma Sfir_13m male)
ATGGGGCCAGTGGGGCAGACGACAGGAACACTAATGGGAGGAAAAAAAAA
AAAAAAGTGCGCCAGAGGGGATCTCGTTCATGAGATGGTGTATTTTGGGG
TGCATCCCATCCCTGTGATTTGTCCTAAAACACGCCGCACCGAAACGCTC
TCCCTTCTCCCCCCCCCTACCGTGCTCCCGGTTTTGCTGCTGCCGATGTT
CCCTGCTCGCTGTTCGTCTTGCGTCGCAGCTCAAGAAGGCACAGGGAAAG
CACTAAGTGCTGGTTTGTGCCCCACGGGTAGGCCGTGCGTGCCTGACTGC
CGCCGCTGCATGGGGCCAGTGGGGCAGACGACAGGAACACTAATGGGAGG
AAAAAAAAAAAAAAAGTGCGCCAGAGGGGATCTCGTTCATGAGATGGTGT
ATTTTGGGGTGCATCCCATCCCTGTGATTTGTCCTAAAACACGCCGCACC
GAAACGCTCTCCCTTCTCCCCCCCCCTACCGTGCTCCCGGTTTTGCTGCT
GCCGATGTTCCCTGCTCGCTGTTCGTCTTGCGTCGCAGCTCAAGAAGGCA
CAGGGAAAGCACTAAGTGCTGGTTTGTGCCCCACGGGTAGGCCGTGCGTG
CCTGACTGCCGCCGCTGC
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