mRNA_S-firma_M_contig954.20528.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig954.20528.1
Unique NamemRNA_S-firma_M_contig954.20528.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: D8LJ61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ61_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 2.240e-106
Identity = 174/207 (84.06%), Postives = 184/207 (88.89%), Query Frame = 2 
Query:  116 MRLGGGGL----AWRRRRPSVVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEK 724
            M L GGGL    ++ RRRPSVVGL+GGIASGKSTVSKAL   CGLEVIDADKLGHESYQPGTRCFGKLVDAFG  IVAGDGTIDRRALGQAVFGN SNMA LQGIVWPEIRLLAE RI+ L  EG ++VVLEAAVLLEAGWDD+CDELWVVQVPPAVARARLMKRNGF E EADKR+ASQPMT++ERAARA VVLSNEGTEEDLV K
Sbjct:    1 MTLNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLEVIDADKLGHESYQPGTRCFGKLVDAFGENIVAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGREGAESVVLEAAVLLEAGWDDLCDELWVVQVPPAVARARLMKRNGFDEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAK 207
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A6H5KRA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRA4_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 1.310e-104
Identity = 180/235 (76.60%), Postives = 194/235 (82.55%), Query Frame = 2 
Query:   41 HCPVAVAVLTSIRAGISTPRAVAPNMRLGGGGL----AWRRRRPSVVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKE 733
            H   A+ +L  I     TP A   +M L GGGL    ++ RRRPSVVGL+GGIASGKSTVSKAL   CGL VIDADKLGHESYQPGTRCFGKLVDAFG KI+AGDGTIDRRALGQAVFGN SNMA LQGIVWPEIRLLAE RI+ L  EG ++VVLEAAVLLEAGWDD+CDELWVVQVPP VARARLMKRNGF E EADKR+ASQPMT++ERAARA VVLSNEGTEEDLV K  E
Sbjct:   12 HLAAALILLALIPVRGYTPPAA--SMTLNGGGLLASFSFTRRRPSVVGLIGGIASGKSTVSKALGTACGLAVIDADKLGHESYQPGTRCFGKLVDAFGEKIIAGDGTIDRRALGQAVFGNPSNMARLQGIVWPEIRLLAEARIEGLGREGAESVVLEAAVLLEAGWDDLCDELWVVQVPPEVARARLMKRNGFDEAEADKRIASQPMTNQERAARATVVLSNEGTEEDLVAKAGE 244
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A6B1A9Z4_9CHLR (Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B1A9Z4_9CHLR)

HSP 1 Score: 191 bits (485), Expect = 6.090e-53
Identity = 106/191 (55.50%), Postives = 130/191 (68.06%), Query Frame = 2 
Query:  167 VGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETW 739
            +GL GGIASGKSTV K L  E G   IDAD LGH++Y+PGT  F ++V+AFG  +VA DGTIDR  LG  VFG+   M  L  IVWP IR LAE  +DRLA  GT   VLEAAV++EAGW D+ DE+WVV V    AR RLM RN FS EEADKR+ SQ +T++ER   A V++SN+ + +   E+V   W
Sbjct:    4 IGLTGGIASGKSTVVKQLQ-ELGAATIDADLLGHQTYEPGTETFKQVVEAFGEDLVAEDGTIDRSKLGPRVFGHPDGMKRLTDIVWPGIRALAEAELDRLAANGTSVAVLEAAVMIEAGWQDLVDEVWVVAVSRDTARERLMARNNFSAEEADKRIDSQ-ITNDERLKHADVMISNDCSMDVAAERVARAW 192
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A2E2YSE9_9GAMM (Dephospho-CoA kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E2YSE9_9GAMM)

HSP 1 Score: 189 bits (481), Expect = 2.190e-52
Identity = 99/194 (51.03%), Postives = 141/194 (72.68%), Query Frame = 2 
Query:  161 SVVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRID-RLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETW 739
            +++GL GGIASGKSTV++ +  + G  VIDADKLGH +Y+PGTR F  +V+ FG +I+A DG+IDR+ LG  VFG++  +  L GIVWPEIR +AE+ I  +  E+  + VVLEAAVLLEAGW+D+ DE+WVV + P VA  R MKR+G   E  + RLA+Q +++ ER A+A V++ N G+EE+L+ ++ + W
Sbjct:    2 TIIGLTGGIASGKSTVAE-ITGQRGAYVIDADKLGHAAYEPGTRAFSAVVEEFGDEILAEDGSIDRKVLGSKVFGSEGGLDRLTGIVWPEIRAMAEEEISTQKIEDPNRTVVLEAAVLLEAGWEDVVDEVWVVVIDPEVAIERAMKRDGVEREAIEARLAAQ-LSNAEREAKADVIIDNSGSEEELLAEIDKKW 193
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A2E5LXA9_9CHLR (Dephospho-CoA kinase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E5LXA9_9CHLR)

HSP 1 Score: 190 bits (482), Expect = 4.840e-52
Identity = 107/195 (54.87%), Postives = 130/195 (66.67%), Query Frame = 2 
Query:  155 RPSVVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETW 739
            R   +GL GGIASGKSTV++    E G+ VIDAD LGH +Y PGT  F  +VDAFGS IVA DG+IDRRALG  VFG    +  L  IVWP IR LA Q +  L   GTK  +LEAAVLLEAGW DM DE+WV  V   +A ARL +RNG  E  A  R+ SQ +++EER A A+VV+ N GT E+L +++K  W
Sbjct:   26 RVHTIGLTGGIASGKSTVAEFFR-EQGVPVIDADILGHRTYDPGTSTFADVVDAFGSDIVAADGSIDRRALGGKVFGKPEELTRLTDIVWPGIRALASQELSDLEVAGTKIALLEAAVLLEAGWQDMVDEVWVTTVEVDIAVARLAERNGLDETAARARIDSQ-LSNEERIAIASVVIENNGTREELADRIKAVW 218
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A2W1AGZ2_9CHLR (Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W1AGZ2_9CHLR)

HSP 1 Score: 186 bits (471), Expect = 9.460e-51
Identity = 101/191 (52.88%), Postives = 131/191 (68.59%), Query Frame = 2 
Query:  167 VGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETW 739
            +GL GGIASGKSTV+  LA + G  +IDAD+LGH +Y+PGT  F ++V AFG+ IV  DGTIDR  LG  VFG    M  L  IVWP I  LA + +      G +  V+EAAVL EAGW+ + DE+WV+ VPPAVAR RLM RNGFS EEADKR+ SQ +++ ER ARA VV+S + + +++  +V+  W
Sbjct:    4 IGLTGGIASGKSTVTGTLA-DLGATIIDADRLGHRTYEPGTETFAQVVAAFGADIVGEDGTIDRPTLGGKVFGEPGAMTRLTDIVWPGIAALAVEEMAAARAAGVEVAVVEAAVLFEAGWETLVDEVWVISVPPAVARQRLMDRNGFSAEEADKRIGSQ-LSNAEREARADVVISTDCSLDEVRSRVESAW 192
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A2A9HEN9_CHLB2 (Dephospho-CoA kinase n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2A9HEN9_CHLB2)

HSP 1 Score: 183 bits (465), Expect = 5.380e-50
Identity = 101/200 (50.50%), Postives = 132/200 (66.00%), Query Frame = 2 
Query:  164 VVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETWTWRAEVLR 763
            V+GL GGIASGKSTV+ +   E G+ VIDAD LGH +Y PGT  + K+V+ FG  +VA DGTIDR+ LG  VFG    +  L  IVWP IR LA +++      G + VVLEAAVLLEAGW+D+ DE+WVV V P +A  RL  RNG   + A  R+ASQ +T+EER AR  V++ N GT ++L  ++++ W    E LR
Sbjct:    3 VIGLTGGIASGKSTVT-SFFRERGIPVIDADILGHRTYDPGTETYQKVVETFGQDVVAADGTIDRKVLGSKVFGRPEELKKLTDIVWPGIRRLASEQLAEFEAAGNELVVLEAAVLLEAGWEDLVDEIWVVVVDPEIAVQRLAARNGLDPDAARARIASQ-LTNEERIARGDVIIENNGTLDELNARIQQAWDSLQERLR 200
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A4D9CQ82_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ82_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.750e-50
Identity = 101/205 (49.27%), Postives = 134/205 (65.37%), Query Frame = 2 
Query:  155 RPSVVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETWTWRAEVLRNR 769
            RP V+G+ GGIASGKS V++      G+ V+DAD LGH SY  GT C+ +L+  FG +IV  DG I+RRALG+ VF +      L+GIVWPEIR L E+ +  L E G  A V+EAAV+LEAGW+D  DE+WVV   P VA+ RLM RN  S E+A +R+ +Q MT++ER  +A  V+ N GT  DL ++V+  W  R  + R R
Sbjct:   17 RPLVIGVTGGIASGKSMVTRLCQGRYGVSVLDADILGHRSYAKGTPCYRQLLKTFGEEIVGEDGQINRRALGRIVFSSPQERNRLEGIVWPEIRRLMEEDLRALGETGIHAAVVEAAVMLEAGWEDAMDEVWVVAAEPEVAKTRLMSRNNLSAEDALRRIEAQ-MTNQERIEKADRVIWNNGTVADLEKEVERAWEERGTLRRRR 220
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BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A6L7UXB2_9CHLR (Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7UXB2_9CHLR)

HSP 1 Score: 183 bits (464), Expect = 1.110e-49
Identity = 106/200 (53.00%), Postives = 132/200 (66.00%), Query Frame = 2 
Query:  146 RRRRPSV--VGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETW 739
            R R P++  +GL GGIASGKSTV   L  E G   IDAD LGH++Y+PGT  F ++V AFG  +VA DGTIDR  LG  VFG+   M  L  IVWP IR LAE  + RL  EGT+  VLEAAV++EAGW D+ DE+WVV V    AR RLM RN FS EEAD+R+ SQ +T++ER   A V++SN+ + E    +V   W
Sbjct:   16 RGRNPTMRSIGLTGGIASGKSTVVNQLR-ELGAATIDADILGHQTYEPGTETFTQVVAAFGEDLVAEDGTIDRSKLGPKVFGHPDGMKRLTDIVWPGIRALAEVELARLEAEGTEIAVLEAAVMIEAGWQDLVDEVWVVAVSRDTARERLMARNSFSAEEADRRIDSQ-ITNDERLKHADVMISNDCSMEVAAARVSRIW 213
[Close]
BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Match: A0A2E5DF81_9GAMM (Dephospho-CoA kinase n=3 Tax=root TaxID=1 RepID=A0A2E5DF81_9GAMM)

HSP 1 Score: 182 bits (462), Expect = 1.150e-49
Identity = 103/193 (53.37%), Postives = 130/193 (67.36%), Query Frame = 2 
Query:  164 VVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGKLVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQRIDRL-AEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNGFSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETW 739
            V+GL GGIASGKST +K L  E G +VIDAD LGHE+Y PGT  F  +V AFG  IVA DG+I+RRALG  VFGN   +  L  IVWPEIR LAE  I ++  E  T  +VLEAAVL EAGW+D+ DE+WVV V P +A  R M+R+G      + R+ SQ +++EER A+A +++ N   EE LV +VK  W
Sbjct:    3 VIGLTGGIASGKSTAAKLLG-ELGAQVIDADVLGHEAYNPGTSAFQAVVQAFGEDIVAEDGSINRRALGGKVFGNDVALKRLTDIVWPEIRRLAELEIHKIRGENPTAVIVLEAAVLFEAGWEDIADEIWVVVVEPEIAIERAMQRDGADRSAIEARINSQ-LSNEERTAKAHLIIDNSEDEEALVSRVKAAW 193
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig954.20528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ61_ECTSI2.240e-10684.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRA4_9PHAE1.310e-10476.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6B1A9Z4_9CHLR6.090e-5355.50Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium... [more]
A0A2E2YSE9_9GAMM2.190e-5251.03Dephospho-CoA kinase n=1 Tax=Gammaproteobacteria b... [more]
A0A2E5LXA9_9CHLR4.840e-5254.87Dephospho-CoA kinase n=1 Tax=Dehalococcoidia bacte... [more]
A0A2W1AGZ2_9CHLR9.460e-5152.88Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium... [more]
A0A2A9HEN9_CHLB25.380e-5050.50Dephospho-CoA kinase n=3 Tax=Chloroflexi TaxID=200... [more]
A0A4D9CQ82_9STRA7.750e-5049.27Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6L7UXB2_9CHLR1.110e-4953.00Dephospho-CoA kinase n=1 Tax=Chloroflexi bacterium... [more]
A0A2E5DF81_9GAMM1.150e-4953.37Dephospho-CoA kinase n=3 Tax=root TaxID=1 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig954contigS-firma_M_contig954:2661..6271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score332.8
Seed ortholog evalue1.6e-88
Seed eggNOG ortholog2880.D8LJ61
Preferred nameCOASY
KEGG rclassRC00002,RC00078
KEGG koko:K00859,ko:K02318
KEGG ReactionR00130,R03035
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
GOsGO:0000003,GO:0001667,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004140,GO:0004595,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005759,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006928,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007300,GO:0007303,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010631,GO:0015936,GO:0015937,GO:0016020,GO:0016301,GO:0016310,GO:0016477,GO:0016482,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019867,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030707,GO:0030855,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040011,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046390,GO:0046483,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048563,GO:0048569,GO:0048609,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0055086,GO:0055088,GO:0055090,GO:0060429,GO:0060562,GO:0065007,GO:0065008,GO:0070013,GO:0070328,GO:0070566,GO:0071704,GO:0072521,GO:0072522,GO:0090130,GO:0090132,GO:0090407,GO:0098588,GO:0098805,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dephospho-CoA kinase activity
EggNOG OGsCOG0237@1,KOG3220@2759
EC2.7.1.24,2.7.7.3
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-02_004890.1
Exons4
Model size2204
Cds size873
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig954.20528.1prot_S-firma_M_contig954.20528.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig954 2665..4944 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.9476995-UTR-S-firma_M_contig954:2660..26641622828788.9476995-UTR-S-firma_M_contig954:2660..2664Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig954 2661..2664 +
1697105163.2790277-UTR-S-firma_M_contig954:2660..26641697105163.2790277-UTR-S-firma_M_contig954:2660..2664Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig954 2661..2664 +
1622828789.014771-UTR-S-firma_M_contig954:4944..62711622828789.014771-UTR-S-firma_M_contig954:4944..6271Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig954 4945..6271 +
1697105163.3661418-UTR-S-firma_M_contig954:4944..62711697105163.3661418-UTR-S-firma_M_contig954:4944..6271Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig954 4945..6271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.9643295-CDS-S-firma_M_contig954:2664..30361622828788.9643295-CDS-S-firma_M_contig954:2664..3036Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 2665..3036 +
1697105163.3112926-CDS-S-firma_M_contig954:2664..30361697105163.3112926-CDS-S-firma_M_contig954:2664..3036Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 2665..3036 +
1622828788.9765024-CDS-S-firma_M_contig954:3712..39151622828788.9765024-CDS-S-firma_M_contig954:3712..3915Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 3713..3915 +
1697105163.3306243-CDS-S-firma_M_contig954:3712..39151697105163.3306243-CDS-S-firma_M_contig954:3712..3915Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 3713..3915 +
1622828788.989698-CDS-S-firma_M_contig954:4100..42451622828788.989698-CDS-S-firma_M_contig954:4100..4245Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 4101..4245 +
1697105163.3406787-CDS-S-firma_M_contig954:4100..42451697105163.3406787-CDS-S-firma_M_contig954:4100..4245Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 4101..4245 +
1622828789.0021708-CDS-S-firma_M_contig954:4791..49441622828789.0021708-CDS-S-firma_M_contig954:4791..4944Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 4792..4944 +
1697105163.3512096-CDS-S-firma_M_contig954:4791..49441697105163.3512096-CDS-S-firma_M_contig954:4791..4944Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig954 4792..4944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig954.20528.1

>prot_S-firma_M_contig954.20528.1 ID=prot_S-firma_M_contig954.20528.1|Name=mRNA_S-firma_M_contig954.20528.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=291bp
MRPAAVVAAVLLHCPVAVAVLTSIRAGISTPRAVAPNMRLGGGGLAWRRR
RPSVVGLVGGIASGKSTVSKALAAECGLEVIDADKLGHESYQPGTRCFGK
LVDAFGSKIVAGDGTIDRRALGQAVFGNQSNMATLQGIVWPEIRLLAEQR
IDRLAEEGTKAVVLEAAVLLEAGWDDMCDELWVVQVPPAVARARLMKRNG
FSEEEADKRLASQPMTDEERAARAAVVLSNEGTEEDLVEKVKETWTWRAE
VLRNRRRRDRSLAYLGLAAIAGTALVAAVSVVLRRGRVLR*
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mRNA from alignment at S-firma_M_contig954:2661..6271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig954.20528.1 ID=mRNA_S-firma_M_contig954.20528.1|Name=mRNA_S-firma_M_contig954.20528.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3611bp|location=Sequence derived from alignment at S-firma_M_contig954:2661..6271+ (Sphaerotrichia firma Sfir_13m male)
CTTCATGAGGCCTGCTGCCGTCGTTGCTGCCGTGCTTCTGCATTGCCCAG
TGGCCGTGGCCGTGCTGACGTCAATCCGTGCCGGGATTTCCACTCCAAGA
GCGGTAGCTCCGAATATGAGGCTTGGCGGAGGAGGACTCGCTTGGCGCCG
CCGTCGTCCGTCCGTGGTCGGCCTGGTCGGGGGCATTGCCTCGGGGAAGA
GCACGGTGTCGAAGGCGCTGGCCGCGGAGTGCGGGTTGGAGGTGATCGAC
GCCGACAAGCTCGGGCACGAGAGCTACCAGCCGGGCACGCGCTGCTTCGG
CAAGCTGGTGGACGCGTTCGGCTCGAAGATCGTGGCCGGGGACGGCACGA
TAGATCGCCGTGCCCTTGGACAGGCGGTGAGTTGCCCACGGAGGTCATGT
TCCGTGTGGCATGCCCGATGTGTTATATCTATCACTCGCGATGCACCGCC
TGACCGCCGGCCTGATGCTTTGAAAGTCGAATTGTTTGCGGCACTGCTGT
GTCCACCTTGTACAACGGCACGCCGGCTGTACTTACATCTTGCTCCTCCT
CGTAGTGCCGCTCTGTTGCATTCCATTGTAGTGTCTACGCCGTCGAATAG
CGAAGGGTCGGTTCTATTGGACGTAGTGGTGGTTGGCAATCACGCTTAGC
CCTTGTCTTCGGCCCTCCGCTTGTACATGCTCCCGCAGTAGTTTTGTTCT
GTTTCGGTTGCACTCGTAGACATAAAAACTGCTGTAGTCTACAACATTTC
ACGCCCAGCAGATTGGATACATCTTGGACACGGGGCGGATTGATTCTTTG
ATTCTTCGATGTTGTTATCGTCTGCTCAGCCTTCCCGGCGTTCCTACCTA
CACAGCGGTATCTTTGTAGCAACGCTTTAACGTTGTTTTGTGGAACTAGT
TCCAAATGACCTGTGCGCCATTCTCTCTCTCTCTCTCTCTCTCTCTCTTC
TCTCTCCGAAACCACGCACTCAAACGGAGAAGACGACGTTACTTGAACAA
ATCAGCTTTCACATCCTTTCCTCTTCCGTCTCCCCCATCAAACAACATCC
AGGTGTTCGGGAACCAATCCAACATGGCCACGCTGCAAGGGATCGTCTGG
CCAGAGATCCGCCTGCTAGCGGAACAGAGAATCGACCGGCTCGCGGAGGA
GGGCACAAAGGCGGTGGTGCTCGAGGCTGCGGTGCTGCTGGAGGCCGGGT
GGGACGACATGTGCGATGAGCTGTGGGTCGTTCAGGTGCCCCCAGCCGTG
GCGCGGTGAGTGCGTTGCCTAAATTTTTTTTTACGCCGTGAATGTCGGGC
AATCGTTGTTAAGAACGGCGCGCGTGTTTTTCTTGAGCATCTACAGCGTG
TTGGCGTGGTCGATGCTAGCATGTATGTTAGCGCACGCCTCAACCTAGGC
TTGTTCTTGAACCCAACCCCTTTCTCTTCTCTCCCGACAGGGCGCGTCTG
ATGAAGCGAAACGGCTTCAGCGAGGAGGAAGCCGACAAGAGGTTGGCCTC
GCAGCCCATGACCGACGAAGAGAGGGCGGCCCGCGCGGCCGTTGTGCTCT
CGAACGAGGGCACGGAGGAGGACTTGGTGGAAAAGGTACGTTCGGTGTTG
AGCGTCTTACCTACAGGGGGTAGCTTTTGTGTTGTTCTGTTGTCTTGTGC
CGGAGGCAGCGGACCGCACGCGCTTGTGCCTTTATTTAGACCGCATTTAC
CGGCTGGCCAATGAGCATACAAGTTTCAGCCGATGAGCATACAAGTTGAA
GTGTGTGTGTTTTTGTTTTTGGCTCGCGTAGACCAGGCCATCAACCGGCG
AGCCCACTGAAAAGAACGTTGGTTGAGCTGGGGTTGAAAAGTATCAAGCT
TTCGTGAATAGGTGTGGTAGCGTGTGCCTGTGCGTGGGGTACGAGCTCGT
TTGTTCATCTCACGTGTGTCTTGTTTTTGGCTGCCCTTGCACAAGCTGCT
CTACCCTATGCTCCTGTGAGGTTTGTGGCCCTTCCAGTACCTTACCGTGT
CACCCGGTAGTGTCTGTGACCGTTACAATACCCCACCGGGACTACCCGTG
CCCTACAGAACCGACCCTTGCTAAGTTGCGTCGACACAAATGACGTCCTA
TTTCGTTTCGCGTCTGGGTGGAAACAAATAGGTGAAGGAGACATGGACTT
GGAGGGCCGAGGTATTGCGGAATCGAAGACGTCGCGACCGTTCCCTAGCA
TACTTAGGCCTGGCGGCAATCGCGGGAACTGCTCTCGTCGCTGCCGTTTC
TGTCGTTTTGCGGCGCGGGCGGGTACTGAGATGAGCAGGCGGCACAGCAG
CCCTCCACCTACAATTTTGACACGGTCGGGGTTGGTACATCTTAGATGTC
TGCAAGGGCAACGTGATTCCCGGAAGTTTACATGTGTGAGGGGTCCCCGA
TCCAATCCACGAGCAGGAAGAAGAACAACACTGAGGGGTGGGAAAGACGG
GGATGGCGGGGACAACGGCGGCGAGGCCCAGCGATTCGCCTACGATGACG
AGGAGAGCCACCTGGCAACAATGACTCACGCATCGCCGGTGACCAGCTGG
AAGGCACGCACATAGGAGCATGGCATCATTTGAGACACGGTGCTGTTGTC
GCTTGGGCCCCCCCTTGAATCGGACCACGAGCCTAGGCCCCCCTACGCAA
CGAACGCTCCGCGACCCTCATGGATGTTTCCGTGGTGCTCGTGGAAGCTC
GCCAGTGGGTAACCGGCGATGCGCGAGCCATGGTCGGCGAATTGCCGGGC
CTCGCACACTCCTTTCGACGACGCTCGTGAGGACACAAGTCAAGGACAGG
CGCCGAGGTTGTGGTAGATCGTGTTCACCTTCTACCAGGGGCGGCAAGTT
TCCTTCCGTGACGTTCAGCCACGAAAGAGAGTGAGTGAGAGAGTAGAGAA
GTGGGTGCCCGGAGATATCGGGTTGGCAAGTTAGCCGATGGTGTCCTTCT
ACACTCTGTGTGTGCGCGAACGGTACGTTATTTCTTGCGCGTGGCCATCC
ACTGAATAATTGTAGCTTCCAGAGGCCAGAGGTATCTAGAACCCGGCTCG
CGCATCGCCGGAGATTTGAAGGCAGGCATCGACGAGCACGAGATACTTCC
GGAGAACCGCCGGAGCTTTGCTCGCTTGCGGGGGCCCTAGACTCGGACTA
CGAGCCTACGGCCCCTGCTGTAAGATACAGCTCTGCGGTCCTTGTGTCAT
CTGTGTGTTGTCGATGCATCAAATCTCCGGCGATGCGCGAGCCATGGCCA
ATGAATTGCTGAGCCTCGCACACCTTCCTCGTGGACGTCAATGAGGACAC
AGGCTTCATGTCGAGGGCAGATCGTGGAAGATAGAAGTGGCACACAGGTT
TTTATATCTAGGGCAGATAGAAGCGGTGTCCACCCACTGCTGTTGTACCA
GGGGCGGCCAAGTTTCCTTTGTTTCGTCTCATGTTTTTGGCCAGAGTAGA
GAAGTGGGCGTGCCCCGGGGCCGGGGCAGCGGGGGCTGCGTAATTTGTTC
TACGTTTGTGGCGTCAACTTCTCGTGCGCGCTCAATGAAGAACTTCGCAA
CAGTTCAGTGTTGTACGTCAAGTGCTCGCGACAGAACCGATTCCTTCGGT
TTCCAGCAGTC
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Coding sequence (CDS) from alignment at S-firma_M_contig954:2661..6271+

>mRNA_S-firma_M_contig954.20528.1 ID=mRNA_S-firma_M_contig954.20528.1|Name=mRNA_S-firma_M_contig954.20528.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1746bp|location=Sequence derived from alignment at S-firma_M_contig954:2661..6271+ (Sphaerotrichia firma Sfir_13m male)
ATGAGGCCTGCTGCCGTCGTTGCTGCCGTGCTTCTGCATTGCCCAGTGGC
CGTGGCCGTGCTGACGTCAATCCGTGCCGGGATTTCCACTCCAAGAGCGG
TAGCTCCGAATATGAGGCTTGGCGGAGGAGGACTCGCTTGGCGCCGCCGT
CGTCCGTCCGTGGTCGGCCTGGTCGGGGGCATTGCCTCGGGGAAGAGCAC
GGTGTCGAAGGCGCTGGCCGCGGAGTGCGGGTTGGAGGTGATCGACGCCG
ACAAGCTCGGGCACGAGAGCTACCAGCCGGGCACGCGCTGCTTCGGCAAG
CTGGTGGACGCGTTCGGCTCGAAGATCGTGGCCGGGGACGGCACGATAGA
TCGCCGTGCCCTTGGACAGGCGATGAGGCCTGCTGCCGTCGTTGCTGCCG
TGCTTCTGCATTGCCCAGTGGCCGTGGCCGTGCTGACGTCAATCCGTGCC
GGGATTTCCACTCCAAGAGCGGTAGCTCCGAATATGAGGCTTGGCGGAGG
AGGACTCGCTTGGCGCCGCCGTCGTCCGTCCGTGGTCGGCCTGGTCGGGG
GCATTGCCTCGGGGAAGAGCACGGTGTCGAAGGCGCTGGCCGCGGAGTGC
GGGTTGGAGGTGATCGACGCCGACAAGCTCGGGCACGAGAGCTACCAGCC
GGGCACGCGCTGCTTCGGCAAGCTGGTGGACGCGTTCGGCTCGAAGATCG
TGGCCGGGGACGGCACGATAGATCGCCGTGCCCTTGGACAGGCGGTGTTC
GGGAACCAATCCAACATGGCCACGCTGCAAGGGATCGTCTGGCCAGAGAT
CCGCCTGCTAGCGGAACAGAGAATCGACCGGCTCGCGGAGGAGGGCACAA
AGGCGGTGGTGCTCGAGGCTGCGGTGCTGCTGGAGGCCGGGTGGGACGAC
ATGTGCGATGAGCTGTGGGTCGTTCAGGTGCCCCCAGCCGTGGCGCGGTG
TTCGGGAACCAATCCAACATGGCCACGCTGCAAGGGATCGTCTGGCCAGA
GATCCGCCTGCTAGCGGAACAGAGAATCGACCGGCTCGCGGAGGAGGGCA
CAAAGGCGGTGGTGCTCGAGGCTGCGGTGCTGCTGGAGGCCGGGTGGGAC
GACATGTGCGATGAGCTGTGGGTCGTTCAGGTGCCCCCAGCCGTGGCGCG
GGCGCGTCTGATGAAGCGAAACGGCTTCAGCGAGGAGGAAGCCGACAAGA
GGTTGGCCTCGCAGCCCATGACCGACGAAGAGAGGGCGGCCCGCGCGGCC
GTTGTGCTCTCGAACGAGGGCACGGAGGAGGACTTGGTGGAAAAGGGCGC
GTCTGATGAAGCGAAACGGCTTCAGCGAGGAGGAAGCCGACAAGAGGTTG
GCCTCGCAGCCCATGACCGACGAAGAGAGGGCGGCCCGCGCGGCCGTTGT
GCTCTCGAACGAGGGCACGGAGGAGGACTTGGTGGAAAAGGTGAAGGAGA
CATGGACTTGGAGGGCCGAGGTATTGCGGAATCGAAGACGTCGCGACCGT
TCCCTAGCATACTTAGGCCTGGCGGCAATCGCGGGAACTGCTCTCGTCGC
TGCCGTTTCTGTCGTTTTGCGGCGCGGGCGGGTACTGAGATGAGTGAAGG
AGACATGGACTTGGAGGGCCGAGGTATTGCGGAATCGAAGACGTCGCGAC
CGTTCCCTAGCATACTTAGGCCTGGCGGCAATCGCGGGAACTGCTCTCGT
CGCTGCCGTTTCTGTCGTTTTGCGGCGCGGGCGGGTACTGAGATGA
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