mRNA_S-firma_M_contig9539.20526.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9539.20526.1
Unique NamemRNA_S-firma_M_contig9539.20526.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9539.20526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9539contigS-firma_M_contig9539:2269..2548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9539.20526.1prot_S-firma_M_contig9539.20526.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9539 2334..2548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.7387917-UTR-S-firma_M_contig9539:2268..23331622828788.7387917-UTR-S-firma_M_contig9539:2268..2333Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9539 2269..2333 +
1697105163.2020025-UTR-S-firma_M_contig9539:2268..23331697105163.2020025-UTR-S-firma_M_contig9539:2268..2333Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9539 2269..2333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.7507265-CDS-S-firma_M_contig9539:2333..23871622828788.7507265-CDS-S-firma_M_contig9539:2333..2387Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9539 2334..2387 +
1697105163.2127025-CDS-S-firma_M_contig9539:2333..23871697105163.2127025-CDS-S-firma_M_contig9539:2333..2387Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9539 2334..2387 +
1622828788.7632437-CDS-S-firma_M_contig9539:2401..25481622828788.7632437-CDS-S-firma_M_contig9539:2401..2548Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9539 2402..2548 +
1697105163.222909-CDS-S-firma_M_contig9539:2401..25481697105163.222909-CDS-S-firma_M_contig9539:2401..2548Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9539 2402..2548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9539.20526.1

>prot_S-firma_M_contig9539.20526.1 ID=prot_S-firma_M_contig9539.20526.1|Name=mRNA_S-firma_M_contig9539.20526.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=67bp
MSFSALHFRLHAAQNGYLSRCFFQQFRLVQFLHAAQRLYVRLWPYFVARY
FERKSWNQRQNLPTLET
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mRNA from alignment at S-firma_M_contig9539:2269..2548+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9539.20526.1 ID=mRNA_S-firma_M_contig9539.20526.1|Name=mRNA_S-firma_M_contig9539.20526.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=280bp|location=Sequence derived from alignment at S-firma_M_contig9539:2269..2548+ (Sphaerotrichia firma Sfir_13m male)
GAGAAAGGAGCCTACCCTACCCTGCCCTTGGGGTCCTTACTGCTCGATAA
CAAACAAATAAAAAAATGAGTTTTAGTGCACTCCATTTTCGGCTGCATGC
AGCACAAAACGGCTATTTAGTTGTTGTGTCTAGTCGCGCTGTTTTTTCCA
ACAATTTCGTCTCGTTCAGTTCCTACATGCAGCACAACGGCTATATGTAC
GTCTATGGCCTTATTTTGTCGCGCGCTATTTTGAAAGAAAATCATGGAAT
CAAAGACAGAACCTCCCCACATTGGAGACG
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Coding sequence (CDS) from alignment at S-firma_M_contig9539:2269..2548+

>mRNA_S-firma_M_contig9539.20526.1 ID=mRNA_S-firma_M_contig9539.20526.1|Name=mRNA_S-firma_M_contig9539.20526.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=402bp|location=Sequence derived from alignment at S-firma_M_contig9539:2269..2548+ (Sphaerotrichia firma Sfir_13m male)
ATGAGTTTTAGTGCACTCCATTTTCGGCTGCATGCAGCACAAAACGGCTA
TTTAATGAGTTTTAGTGCACTCCATTTTCGGCTGCATGCAGCACAAAACG
GCTATTTATCGCGCTGTTTTTTCCAACAATTTCGTCTCGTTCAGTTCCTA
CATGCAGCACAACGGCTATATGTACGTCTATGGCCTTATTTTGTCGCGCG
CTATTTTGAAAGAAAATCATGGAATCAAAGACAGAACCTCCCCACATTGG
AGACGTCGCGCTGTTTTTTCCAACAATTTCGTCTCGTTCAGTTCCTACAT
GCAGCACAACGGCTATATGTACGTCTATGGCCTTATTTTGTCGCGCGCTA
TTTTGAAAGAAAATCATGGAATCAAAGACAGAACCTCCCCACATTGGAGA
CG
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