mRNA_S-firma_M_contig9532.20521.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9532.20521.1
Unique NamemRNA_S-firma_M_contig9532.20521.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A813ZS71_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813ZS71_9BILA)

HSP 1 Score: 108 bits (270), Expect = 2.570e-23
Identity = 74/273 (27.11%), Postives = 132/273 (48.35%), Query Frame = 1
Query:   31 KSMNNRYLGFTQLTERLAGWKRMATLGRLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKRF--KGGQRNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNGHAIPLYAGASCKSSNE 843
            K  N+ ++ + QL + L          +L+T NL +    L  QL+  KR  +L+S+ ++  +  ++   +        I+ K++ A+AG+Y  +G+ +++ DLA+LVLRIGGP LL+   +   LP  S   +                       K I   VL+ + +F  + G    +    DE+AI+ K  W+P +N ++GFC  H   ++    F++  ++  LK       +HL KEA+VITL+++ +++    P+     C  SNE
Sbjct:  129 KFTNHSFMTYLQLKQELDEKNTKINSQKLETLNLRRSNITLNNQLSDYKRFKILVSQNDIPRIHVLVKSCIKSNYGINGIIEKIKQAIAGSYKPKGYGQKDIDLAILVLRIGGPRLLYTFNKLNQLPSSSLVNKALNTTMNI----------ELSYSKTISEMVLINMSKFFDENGFDRFYSIKIDEIAISPKIRWSPGNNEILGFCFNHKFNIKS-YSFDSWVKLVELKNKYQKNEIHLCKEALVITLSRISNTDIIPRPILVLPICCHSNE 390          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A6H5KA62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA62_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 4.340e-23
Identity = 69/209 (33.01%), Postives = 114/209 (54.55%), Query Frame = 1
Query:  127 NLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKRFKGGQRNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKE 753
            NL ++   + ++L   K++ +     ++ GVRRVLAQAL  G S   ++  LEAA  G Y AR   +++ DLA+LVLR+GGP+ L  L Q   LP  S T  Y    +  + F  CAS    ++  A+ AN+  +++ + GG+  L+++  DE+A  + A     ++T++G C + +      + F+N+  V+ L   L  G +HLG E
Sbjct:    3 NLKRQASRIGRKLQEYKKVMMFHGDIDIPGVRRVLAQALKDGKSPIAMLGTLEAAFQGRYRARAHTQDDLDLAMLVLRVGGPSQLFSLSQALCLP--SVTSVYVEMKKRHMSFAPCASLKYEILEPAVMANLQAVVEVY-GGRSRLFQSQVDEIAQEKHARHYQNNDTILGLCAQCTG--ESNVYFKNINHVERLGGKLKKGEIHLGSE 206          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A5M3MD07_CONPW (Uncharacterized protein n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MD07_CONPW)

HSP 1 Score: 102 bits (254), Expect = 2.780e-21
Identity = 79/277 (28.52%), Postives = 128/277 (46.21%), Query Frame = 1
Query:   40 NNRYLGFTQLTERLAGWKRMATLGRLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKR--FKGGQRNLWKAA-----TDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNGHAIPLYAGASCKSSNESQ 849
            N   L   QLT+ +          +L   NLT+R    + +L     + + +++E+V  +++++A A+  G S +TI+ ++E A+   Y  RG+ +E+ D+ LL  R+GG  LL VL +   LP L   +++   +   I            IG    A+ +  I+   F        + A      DE+A+ +KA++N K   +MG C +H+  +   L   N      + E L     HLGKEA VI +   G  N    PL A ASCKS   +Q
Sbjct:   11 NYHLLSHHQLTDVIRSMSHTNNTLKLNILNLTRRLGTTLTRLDAFNALVMALAEEDVPRLQQLIATAVRHGDSVRTIINRIEEAVTRVYSPRGYDQEDYDIGLLAYRLGGRQLLAVLNRRLSLPSLRTLQRHQVFINVHIT-----------IGSICLADFITNIRNTVFPSSSSTATRLAGHTICIDEIALQEKADYNSKTQQVMGICHQHASAVN--LTLTNTESAIRIAESLAREECHLGKEATVIAVTTWG--NDSIYPLLAAASCKSETPAQ 272          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A369JXW5_HYPMA (Uncharacterized protein n=1 Tax=Hypsizygus marmoreus TaxID=39966 RepID=A0A369JXW5_HYPMA)

HSP 1 Score: 102 bits (254), Expect = 1.100e-20
Identity = 76/268 (28.36%), Postives = 127/268 (47.39%), Query Frame = 1
Query:   40 NNRYLGFTQLTERLAGWKRMATLGRLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANV----LVLIKRFKGGQRNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNGHAIPLYAGASCK 831
            N++YL   QL   L    +     +L+  +L ++    +++L    R  + +S  ++  + +++ Q L  GA    I+ K+E+ALAG YHARG+ E + D+AL+VLR+GG  LL+ L     +P L   R+ A  +   +P +G       L       N     L   + F+ G    W    DE+ + + A + P  +++ G C EHS  +   L     G  + +   L  G +H GKEA VI +   G+    A P++   +CK
Sbjct:  368 NHKYLNHEQLRMLLEDKDKSLNEWKLKALSLGRKCVSFLRKLGDHSRFLMAISTGDIPRLNQLVKQGLKDGAGISAIIRKVESALAGAYHARGYGETDLDIALMVLRLGGRRLLYALNHKFSVPSLRALRR-ARVMTRLMPSIGSPKTADILFNIRALFNPKLEGLNKDRPFRTGMSVFW----DEINMEEVACYFPHLDSVGGLCREHSDAVNVRLA--TFGNAEAIAHALADGTVHYGKEASVIAMGSFGTEIRGAFPIFISPTCK 628          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A7M5X508_9CNID (Uncharacterized protein n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X508_9CNID)

HSP 1 Score: 94.7 bits (234), Expect = 3.680e-18
Identity = 72/248 (29.03%), Postives = 124/248 (50.00%), Query Frame = 1
Query:   43 NRYLGFTQLTERLAGWKRMATLGRLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKRFKGGQRNLWKAA--TDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKEAVVITLAQV 780
            N YL F QL  +L   ++ A+L  ++ + L  + + L K L+  KR  + +++  V  +  ++  AL    S Q I+ K   A+AG Y AR + +++KDLA LVL+ GGP+LL +L +   LP  S   + + K      FV  +             N  +   +F+G + + +  +  +DE  IN +  ++ K N ++G C EH   +   L F+ M   + L+E L  G +H+ KE +V  ++ V
Sbjct:  192 NEYLTFNQLKNKLEKNQKKASLLSIENYKLNNKVEQLGKTLSFYKRFVIYIAENKVPRLHFLVNVALNNNRSIQYILGKCTDAVAGVYKAR-FDQDDKDLAFLVLKFGGPSLLDILYRANVLPSTSLAYRMSKKGAHLKSFVDMS------YKDCFNENFNM---KFEGDESSKFGLSIKSDETFINPRLRYDSKANKIVGTCYEHHGNVN--LDFKTMEDAEILQEKLSAGEIHIPKECLVTGISSV 427          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A0C9VXQ4_SPHS4 (Uncharacterized protein (Fragment) n=1 Tax=Sphaerobolus stellatus (strain SS14) TaxID=990650 RepID=A0A0C9VXQ4_SPHS4)

HSP 1 Score: 92.4 bits (228), Expect = 1.900e-17
Identity = 64/245 (26.12%), Postives = 115/245 (46.94%), Query Frame = 1
Query:  115 LQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKRFKG------GQRNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNGHAIPLYAGASCK 831
            L+  NL +R   L+  +   KR  + ++  +V  +R+++  AL + AS + IV ++E A+AG      ++E + DL LL L++GGP L++ LQ     P LS  R++A K    I            +G+    ++   +K F G      GQ +      DE+ + ++  +    N ++G C EH   +   +   ++  V  + + +  G  HLGKEA V  + +    N +  P+    +CK
Sbjct:    1 LKAMNLQRRIGTLMHAIGDHKRFAMAVATYDVPRIRQLVRIALSQSASPKEIVRRIELAMAGLKKTCSYEENDFDLGLLCLQLGGPKLVYALQHAGASPALSTIRKHAVKCNVVIS-----------VGRPKALDIQQNLKTFWGSRLTGVGQMSGHSLLMDEINLEERGRYLSSSNIIVGLCREHGHTVNPSVT--SIETVQAVAKAIQEGHCHLGKEATVCAIGRFAKDNYNISPVLLSPTCK 232          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A4R0RGD7_9APHY (Uncharacterized protein n=1 Tax=Steccherinum ochraceum TaxID=92696 RepID=A0A4R0RGD7_9APHY)

HSP 1 Score: 92.0 bits (227), Expect = 3.810e-17
Identity = 74/272 (27.21%), Postives = 136/272 (50.00%), Query Frame = 1
Query:   40 NNRYLGFTQLTERLAGWKRMATLGRLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVL-VLIKRFKGGQRNLWKAAT------DEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELI-FENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNGHAIPLYAGASCK 831
            N+++L   QL    A         +L+T  L+++   L  +L+  KR  + ++  +   +++++ Q L +G    +IV++LE  + G Y ARG+   + D++LLVLR+GG  LL+ + Q   +P +    +  G++ TA   +  + G P L    I  N+  + +       +  +K  T      DE++  + A + P  +++ G C EH+ G+   L+ FE+   VD  ++L ++G +H GKEA VI +A        A P+    +CK
Sbjct:  218 NHKWLTHEQLCALAASQSAKLKDEKLKTLKLSRQVNSLADKLSEYKRFVMAVATNDFPRLKQLVGQCLKQGTGISSIVSQLERCIRGVYQARGYTNNDTDISLLVLRLGGRKLLYAMAQYLKIPSV----RTLGRL-TAFTRIMPSPGFPKL--SEITFNIKEIFLSTLPHSHQEGFKPRTGVSILWDEISQEEVACYFPHSDSVGGLCREHADGMNTRLLSFEHA--VDIARKL-ESGEVHYGKEASVIAIASFDDRIRGAFPIVVSPTCK 479          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A8H3AJ99_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AJ99_9AGAM)

HSP 1 Score: 89.7 bits (221), Expect = 2.090e-16
Identity = 69/278 (24.82%), Postives = 133/278 (47.84%), Query Frame = 1
Query:   52 LGFTQLTERLAGWKRMATLGRLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLS--YTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKRFKGGQ---------RNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIF---ENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNGHAIPLYAGASCKSSNE 843
            + F QL + L    +     +L+    +   + L +QL    ++   +    +  + R+L  A  +  S   I+ +++ A  G Y  +G+ ++E +++ LVL +GGP LL+ L Q  GLP LS  Y + +  K+  +I F       P ++      N +  +      Q         +  +    DE+A+ ++ E++   ++L+GFC EHS  L  ++     +++  +  ++ELL  G+ H+ KEA VI LA   S++  A  + A  +CK+ ++
Sbjct:    1 MNFNQLIDTLRDKNKQIKDLKLKVLEQSNHIETLARQLGDFSQLLSELGLCEIPWLHRLLHAAHLKNLSPAKILDRVQQAKQGKYETKGFSQKEYNISALVLHLGGPRLLYALSQGLGLPSLSTTYRQSHYPKLLPSISF----PSSPEILANI---NAMFSVPDTHASQSGPEPIHAIKRGFSLLIDEIALEERPEYSVVQDSLVGFCREHSAELTSKIASASTQSLESIQSIRELLRLGKCHIAKEATVIALAPFSSTDYSAQVILASGTCKTESD 271          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A0C3ALT1_PILCF (Uncharacterized protein (Fragment) n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3ALT1_PILCF)

HSP 1 Score: 89.4 bits (220), Expect = 2.700e-16
Identity = 70/224 (31.25%), Postives = 119/224 (53.12%), Query Frame = 1
Query:  127 NLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARG-WKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPAL--IGKAIRANVLVLIKRFKGGQRNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDH----LKELLDTG-RLHLGKEAVVITLA 774
            N  +R + L  +L   KRI +L+S  +V G+RR+LA +L +GAS+QTI   LE+A++G Y  RG + + + D++ LV  +GGP LL+ LQ++ GL       ++  K+   IP +G  S       I      +V    K  + G  +   A  D +A++ +  + P+ ++++G C EHS   R  L  +++  V+     L E  D+  ++  G EA V+ +A
Sbjct:  112 NSKRRFETLGHKLNDHKRILMLLSSNDVAGLRRLLAASLRKGASAQTICGFLESAISGLYRPRGGFTQRDFDVSFLVKALGGPHLLYALQRSHGLASWRTVHRHV-KIPKLIPSIGVPSSDEISQNIASFYDPSVKPHAKPTQAGLLSGNVAMFDGIALDTRCRYCPEQDSILGLCREHSH--RVNLKVDSIESVEQICVALSEPKDSASKVCFGSEATVVGIA 332          
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Match: A0A4Y9XVU7_9AGAM (Uncharacterized protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XVU7_9AGAM)

HSP 1 Score: 87.8 bits (216), Expect = 9.080e-16
Identity = 72/248 (29.03%), Postives = 112/248 (45.16%), Query Frame = 1
Query:  112 RLQTFNLTKRTKVLVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAGTYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVRTAIPFVGCASGHPALIGKAIRANVLVLIKRFKG------GQRNLWKAATDEVAINQKAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGKEAVVITLAQVGSSNG--HAIPLYAGASCK 831
            RLQ  N  ++   L   + + K+I L +S + +  + RV      R      ++  ++ A  GTYH +G++EE+   ALL LR+GG  +  +  +  G P  S  RQ     RT+IP +  +   P L    IR NV    +   G      G         DE+A  ++  W+ K N ++G C E  KG  + L F +M  +  L E L+ G +HL  EA V  +  +  +     A P+    SCK
Sbjct:  371 RLQRLNNARKIVGLEGVVDIHKQILLAISSQRIQRIDRVFRAGFSRRLGLHAMLVMVKKAADGTYHPKGYEEEDDLQALLFLRLGGARVADIAHRIFGTPATSTIRQ-----RTSIPLLLSSPSTPTL--SEIRHNVEATFQDMSGLLTGSPGSAMHAVLMFDELATEKRPRWDDKTNKILGICRECGKG--RCLDFSSMDDLQLLFEDLEKGTIHLASEATVGAIGLLSDNTRLYSARPVLLSGSCK 609          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9532.20521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813ZS71_9BILA2.570e-2327.11Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6H5KA62_9PHAE4.340e-2333.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5M3MD07_CONPW2.780e-2128.52Uncharacterized protein n=1 Tax=Coniophora puteana... [more]
A0A369JXW5_HYPMA1.100e-2028.36Uncharacterized protein n=1 Tax=Hypsizygus marmore... [more]
A0A7M5X508_9CNID3.680e-1829.03Uncharacterized protein n=2 Tax=Clytia hemisphaeri... [more]
A0A0C9VXQ4_SPHS41.900e-1726.12Uncharacterized protein (Fragment) n=1 Tax=Sphaero... [more]
A0A4R0RGD7_9APHY3.810e-1727.21Uncharacterized protein n=1 Tax=Steccherinum ochra... [more]
A0A8H3AJ99_9AGAM2.090e-1624.82Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A0C3ALT1_PILCF2.700e-1631.25Uncharacterized protein (Fragment) n=1 Tax=Piloder... [more]
A0A4Y9XVU7_9AGAM9.080e-1629.03Uncharacterized protein n=1 Tax=Dentipellis fragil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9532contigS-firma_M_contig9532:166..1339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue9.1e-28
Seed eggNOG ortholog2880.D7G3X4
EggNOG OGs2DMFT@1,2S64X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size852
Cds size852
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9532.20521.1prot_S-firma_M_contig9532.20521.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9532 166..1339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828788.4258194-CDS-S-firma_M_contig9532:165..6211622828788.4258194-CDS-S-firma_M_contig9532:165..621Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9532 166..621 +
1697105163.0634096-CDS-S-firma_M_contig9532:165..6211697105163.0634096-CDS-S-firma_M_contig9532:165..621Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9532 166..621 +
1622828788.445444-CDS-S-firma_M_contig9532:817..9911622828788.445444-CDS-S-firma_M_contig9532:817..991Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9532 818..991 +
1697105163.074716-CDS-S-firma_M_contig9532:817..9911697105163.074716-CDS-S-firma_M_contig9532:817..991Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9532 818..991 +
1622828788.4709082-CDS-S-firma_M_contig9532:1117..13391622828788.4709082-CDS-S-firma_M_contig9532:1117..1339Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9532 1118..1339 +
1697105163.0956964-CDS-S-firma_M_contig9532:1117..13391697105163.0956964-CDS-S-firma_M_contig9532:1117..1339Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9532 1118..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9532.20521.1

>prot_S-firma_M_contig9532.20521.1 ID=prot_S-firma_M_contig9532.20521.1|Name=mRNA_S-firma_M_contig9532.20521.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=284bp
RAQLDATTQGKSMNNRYLGFTQLTERLAGWKRMATLGRLQTFNLTKRTKV
LVKQLTLEKRITLLMSKENVGGVRRVLAQALGRGASSQTIVAKLEAALAG
TYHARGWKEEEKDLALLVLRIGGPALLHVLQQTTGLPGLSYTRQYAGKVR
TAIPFVGCASGHPALIGKAIRANVLVLIKRFKGGQRNLWKAATDEVAINQ
KAEWNPKDNTLMGFCMEHSKGLRQELIFENMGRVDHLKELLDTGRLHLGK
EAVVITLAQVGSSNGHAIPLYAGASCKSSNESQQ
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mRNA from alignment at S-firma_M_contig9532:166..1339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9532.20521.1 ID=mRNA_S-firma_M_contig9532.20521.1|Name=mRNA_S-firma_M_contig9532.20521.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1174bp|location=Sequence derived from alignment at S-firma_M_contig9532:166..1339+ (Sphaerotrichia firma Sfir_13m male)
CGTGCACAGCTGGACGCCACGACGCAAGGCAAGAGCATGAACAACCGGTA CCTCGGCTTTACGCAGCTCACCGAGAGACTGGCGGGGTGGAAGAGGATGG CTACACTGGGGCGCCTGCAGACCTTCAACCTCACGAAGAGAACCAAGGTA CTGGTGAAGCAGTTGACCCTTGAAAAACGCATCACGTTACTCATGTCTAA AGAGAACGTCGGTGGCGTTAGGCGCGTGCTGGCCCAGGCCCTCGGGCGGG GAGCGTCCAGCCAAACAATCGTTGCGAAGCTCGAAGCAGCGTTGGCCGGG ACTTACCACGCTCGTGGGTGGAAGGAAGAAGAGAAGGATCTGGCGTTGCT GGTTCTGCGGATTGGGGGACCTGCTTTGCTGCATGTTCTGCAGCAGACGA CAGGGCTGCCCGGGTTGTCGTACACTCGACAGTACGCCGGCAAGGTGAGA ACCGCTGTGTAGTATAGTTTTCTGTGTTCGTTCGTTGTCGTCTGGCTTGT TTTGGAAAGTTTAAGTTTCCAATTTAATGTTTGGAGGCTCTCTCACAGAT CTCCGCGGACACAGTTAGCTACTACTGTTTTTGTTGTAGACGATGTCGTG GGTCGATTAATAAAGTTTCCGGATTGTACTCCGCACCGCTCTCCTAAATC AGATCCCCTTCGTTGGGTGTGCATCGGGGCACCCGGCTTTGATCGGGAAG GCTATTCGCGCGAACGTGCTGGTACTCATCAAAAGGTTCAAGGGCGGTCA GCGCAACCTTTGGAAGGCTGCGACGGACGAGGTGGCCATAAACCAGAAGG CCGAGTGGAATCCCAAGGACAACACGGTAGGAAACGATAAAATGCGTGCA GATGTTTTAGTAGAAAATTGAAGGAGTTCCTCACTCTCGAAACAACTAGT ATTGTAACAATACCTTGCGTGTGGCCCACGTGTGCTGTTGTCGTTTTGCC AGTTGATGGGGTTTTGCATGGAGCATTCGAAGGGTTTACGCCAGGAACTG ATCTTCGAGAACATGGGAAGGGTCGACCATCTCAAGGAACTTCTCGATAC TGGACGACTGCACCTCGGTAAAGAGGCGGTCGTCATTACGCTGGCCCAAG TAGGCAGCTCTAATGGCCACGCCATTCCCTTGTATGCCGGCGCCAGCTGC AAGTCGAGCAACGAGAGTCAGCAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9532:166..1339+

>mRNA_S-firma_M_contig9532.20521.1 ID=mRNA_S-firma_M_contig9532.20521.1|Name=mRNA_S-firma_M_contig9532.20521.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1704bp|location=Sequence derived from alignment at S-firma_M_contig9532:166..1339+ (Sphaerotrichia firma Sfir_13m male)
CGTGCACAGCTGGACGCCACGACGCAAGGCAAGAGCATGAACAACCGGTA
CCTCGGCTTTACGCAGCTCACCGAGAGACTGGCGGGGTGGAAGAGGATGG
CTACACTGGGGCGCCTGCAGACCTTCAACCTCACGAAGAGAACCAAGGTA
CTGGTGAAGCAGTTGACCCTTGAAAAACGCATCACGTTACTCATGTCTAA
AGAGAACGTCGGTGGCGTTAGGCGCGTGCTGGCCCAGGCCCTCGGGCGGG
GAGCGTCCAGCCAAACAATCGTTGCGAAGCTCGAAGCAGCGTTGGCCGGG
ACTTACCACGCTCGTGGGTGGAAGGAAGAAGAGAAGGATCTGGCGTTGCT
GGTTCTGCGGATTGGGGGACCTGCTTTGCTGCATGTTCTGCAGCAGACGA
CAGGGCTGCCCGGGTTGTCGTACACTCGACAGTACGCCGGCAAGGTGAGA
ACCGCTCGTGCACAGCTGGACGCCACGACGCAAGGCAAGAGCATGAACAA
CCGGTACCTCGGCTTTACGCAGCTCACCGAGAGACTGGCGGGGTGGAAGA
GGATGGCTACACTGGGGCGCCTGCAGACCTTCAACCTCACGAAGAGAACC
AAGGTACTGGTGAAGCAGTTGACCCTTGAAAAACGCATCACGTTACTCAT
GTCTAAAGAGAACGTCGGTGGCGTTAGGCGCGTGCTGGCCCAGGCCCTCG
GGCGGGGAGCGTCCAGCCAAACAATCGTTGCGAAGCTCGAAGCAGCGTTG
GCCGGGACTTACCACGCTCGTGGGTGGAAGGAAGAAGAGAAGGATCTGGC
GTTGCTGGTTCTGCGGATTGGGGGACCTGCTTTGCTGCATGTTCTGCAGC
AGACGACAGGGCTGCCCGGGTTGTCGTACACTCGACAGTACGCCGGCAAG
GTGAGAACCGCTATCCCCTTCGTTGGGTGTGCATCGGGGCACCCGGCTTT
GATCGGGAAGGCTATTCGCGCGAACGTGCTGGTACTCATCAAAAGGTTCA
AGGGCGGTCAGCGCAACCTTTGGAAGGCTGCGACGGACGAGGTGGCCATA
AACCAGAAGGCCGAGTGGAATCCCAAGGACAACACGATCCCCTTCGTTGG
GTGTGCATCGGGGCACCCGGCTTTGATCGGGAAGGCTATTCGCGCGAACG
TGCTGGTACTCATCAAAAGGTTCAAGGGCGGTCAGCGCAACCTTTGGAAG
GCTGCGACGGACGAGGTGGCCATAAACCAGAAGGCCGAGTGGAATCCCAA
GGACAACACGTTGATGGGGTTTTGCATGGAGCATTCGAAGGGTTTACGCC
AGGAACTGATCTTCGAGAACATGGGAAGGGTCGACCATCTCAAGGAACTT
CTCGATACTGGACGACTGCACCTCGGTAAAGAGGCGGTCGTCATTACGCT
GGCCCAAGTAGGCAGCTCTAATGGCCACGCCATTCCCTTGTATGCCGGCG
CCAGCTGCAAGTCGAGCAACGAGAGTCAGCAGTTGATGGGGTTTTGCATG
GAGCATTCGAAGGGTTTACGCCAGGAACTGATCTTCGAGAACATGGGAAG
GGTCGACCATCTCAAGGAACTTCTCGATACTGGACGACTGCACCTCGGTA
AAGAGGCGGTCGTCATTACGCTGGCCCAAGTAGGCAGCTCTAATGGCCAC
GCCATTCCCTTGTATGCCGGCGCCAGCTGCAAGTCGAGCAACGAGAGTCA
GCAG
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