mRNA_S-firma_M_contig9522.20515.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9522.20515.1
Unique NamemRNA_S-firma_M_contig9522.20515.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9522.20515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9522contigS-firma_M_contig9522:2515..3536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size356
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9522.20515.1prot_S-firma_M_contig9522.20515.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9522 2665..3536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828787.4482248-UTR-S-firma_M_contig9522:2514..26641622828787.4482248-UTR-S-firma_M_contig9522:2514..2664Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9522 2515..2664 +
1697105162.4586785-UTR-S-firma_M_contig9522:2514..26641697105162.4586785-UTR-S-firma_M_contig9522:2514..2664Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9522 2515..2664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828787.4674695-CDS-S-firma_M_contig9522:2664..26721622828787.4674695-CDS-S-firma_M_contig9522:2664..2672Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9522 2665..2672 +
1697105162.4676485-CDS-S-firma_M_contig9522:2664..26721697105162.4676485-CDS-S-firma_M_contig9522:2664..2672Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9522 2665..2672 +
1622828787.481218-CDS-S-firma_M_contig9522:3340..35361622828787.481218-CDS-S-firma_M_contig9522:3340..3536Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9522 3341..3536 +
1697105162.4807203-CDS-S-firma_M_contig9522:3340..35361697105162.4807203-CDS-S-firma_M_contig9522:3340..3536Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9522 3341..3536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9522.20515.1

>prot_S-firma_M_contig9522.20515.1 ID=prot_S-firma_M_contig9522.20515.1|Name=mRNA_S-firma_M_contig9522.20515.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=68bp
MRRCQGQSEHILRHGTTATSPRAMAVSAESTLDRRQSSWKRGWEVDNFSK
GRARLLSDVCCSVVVFSV
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mRNA from alignment at S-firma_M_contig9522:2515..3536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9522.20515.1 ID=mRNA_S-firma_M_contig9522.20515.1|Name=mRNA_S-firma_M_contig9522.20515.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=1022bp|location=Sequence derived from alignment at S-firma_M_contig9522:2515..3536+ (Sphaerotrichia firma Sfir_13m male)
CCTCGTGTCCCCCATGCTCTCAGGGAAACCACAGCGAGGCAAGGCTTCTT
TTCGAGAGAGCCCTCGCCATTCGAAAGCAGAAGCTTGGGGAGGGGCACAA
GGACACAATACTAACTCAAACCGCGCTGACGGAGTTGAACGAGAGTCGGC
ATGCGCAGGTTGGAAAATCGTCGAGATAGTTGCCGCATTGAAAATGCTTC
ACCAGTCCTGGCGACGGAAGGGCGTTTCCTCGCGTTTGTGTTTGATAGGT
TTTCAGCCCGCACCATTGAAAACGCTGTACTTGTCACTACCAACGGGCTC
GATCCACTACACTTGGGTATTAAGTTGCGTCGACTTACGCTCCCGCACTC
AGGAGCAGCAGCGTTACGCCCGGTGTAAAACGCAAGAGCGATTGTACTTG
ATTTCATATGTCAGCCCCTTAGCTGCATATGGACTCCGAAGCCTGTTGCT
TTCCTACTACTCTTTCAATGCCTGCAACCTCAACATCGACCTCAAGCGTT
TTCTCCCCCCCGCGTAAAATGGGCGTGTTGACAAGATGTTGATGGAGAAA
AATGTCTCCATGTCTGCGTGTGCTGAATTCAGTGGATGCTCATCAGACTT
GCCGGCAAGCCGAATGTGCAAGGATTGCCACATCATGCTCTGTCGCTTGA
AATGATTCCCAACAATGCTTTCGGCGCCGTTCGAAGGCTGTCGAACGACG
ACTGGTTGCATCCTACCTAGTGGTCGGTGCGCGCTTTTCCTCAAAGACGT
ACGGAAAGTACCCACCACCAAGGAAAACAAGCGCATCGCCTGACTGTTGG
TGACGGCCTACTCTGTTGATTTGCAGGTGCCAGGGTCAGAGTGAACATAT
CCTGAGACACGGAACAACGGCAACGTCGCCTCGTGCCATGGCCGTCTCGG
CCGAAAGTACGCTCGATAGACGTCAGAGCTCATGGAAGAGGGGGTGGGAG
GTGGATAATTTCTCGAAGGGTCGTGCTCGTTTGTTGTCTGACGTTTGTTG
CTCTGTGGTCGTTTTCTCAGTG
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Coding sequence (CDS) from alignment at S-firma_M_contig9522:2515..3536+

>mRNA_S-firma_M_contig9522.20515.1 ID=mRNA_S-firma_M_contig9522.20515.1|Name=mRNA_S-firma_M_contig9522.20515.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=408bp|location=Sequence derived from alignment at S-firma_M_contig9522:2515..3536+ (Sphaerotrichia firma Sfir_13m male)
ATGCGCAGATGCGCAGGTGCCAGGGTCAGAGTGAACATATCCTGAGACAC
GGAACAACGGCAACGTCGCCTCGTGCCATGGCCGTCTCGGCCGAAAGTAC
GCTCGATAGACGTCAGAGCTCATGGAAGAGGGGGTGGGAGGTGGATAATT
TCTCGAAGGGTCGTGCTCGTTTGTTGTCTGACGTTTGTTGCTCTGTGGTC
GTTTTCTCAGTGGTGCCAGGGTCAGAGTGAACATATCCTGAGACACGGAA
CAACGGCAACGTCGCCTCGTGCCATGGCCGTCTCGGCCGAAAGTACGCTC
GATAGACGTCAGAGCTCATGGAAGAGGGGGTGGGAGGTGGATAATTTCTC
GAAGGGTCGTGCTCGTTTGTTGTCTGACGTTTGTTGCTCTGTGGTCGTTT
TCTCAGTG
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