mRNA_S-firma_M_contig952.20510.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig952.20510.1
Unique NamemRNA_S-firma_M_contig952.20510.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig952.20510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig952contigS-firma_M_contig952:5351..7390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size770
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig952.20510.1prot_S-firma_M_contig952.20510.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig952 5351..7390 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828786.8957994-CDS-S-firma_M_contig952:5350..56711622828786.8957994-CDS-S-firma_M_contig952:5350..5671Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 5351..5671 +
1697105162.1216438-CDS-S-firma_M_contig952:5350..56711697105162.1216438-CDS-S-firma_M_contig952:5350..5671Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 5351..5671 +
1622828786.9083874-CDS-S-firma_M_contig952:6095..61701622828786.9083874-CDS-S-firma_M_contig952:6095..6170Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 6096..6170 +
1697105162.1314673-CDS-S-firma_M_contig952:6095..61701697105162.1314673-CDS-S-firma_M_contig952:6095..6170Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 6096..6170 +
1622828786.9208791-CDS-S-firma_M_contig952:6490..66521622828786.9208791-CDS-S-firma_M_contig952:6490..6652Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 6491..6652 +
1697105162.1446662-CDS-S-firma_M_contig952:6490..66521697105162.1446662-CDS-S-firma_M_contig952:6490..6652Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 6491..6652 +
1622828786.9386446-CDS-S-firma_M_contig952:7180..73901622828786.9386446-CDS-S-firma_M_contig952:7180..7390Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 7181..7390 +
1697105162.1575918-CDS-S-firma_M_contig952:7180..73901697105162.1575918-CDS-S-firma_M_contig952:7180..7390Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig952 7181..7390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig952.20510.1

>prot_S-firma_M_contig952.20510.1 ID=prot_S-firma_M_contig952.20510.1|Name=mRNA_S-firma_M_contig952.20510.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=256bp
MVASCAVAAVVVICVAGRIRKTRPRRQSAQRRRARRRRPGPQPFGWRVSG
RAGWGRPEEAVAGALRDAEHQLSEKERRAKDSRELRRLFNRSVQSAKRIA
ENLRFSKQEVGSLRGEKETLRDQLETLQRHNKWLSERGETLKTAVLTAER
ETSSKRALQAQSASALARKKAELEAAREETGRLRGRLASSKARMAEMVEA
KAAQEALAEALQGTVDGLTSEKASAAMELAAERLGARAARAEAADLAERL
DAAEMA
back to top

mRNA from alignment at S-firma_M_contig952:5351..7390+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig952.20510.1 ID=mRNA_S-firma_M_contig952.20510.1|Name=mRNA_S-firma_M_contig952.20510.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2040bp|location=Sequence derived from alignment at S-firma_M_contig952:5351..7390+ (Sphaerotrichia firma Sfir_13m male)
ATGGTCGCCTCCTGCGCCGTTGCCGCGGTGGTGGTGATCTGCGTGGCAGG
GCGCATCCGCAAGACGCGCCCGAGGCGGCAGTCGGCCCAGCGGCGGCGCG
CGCGGAGGCGACGCCCGGGGCCGCAACCTTTCGGCTGGCGGGTCTCGGGC
CGAGCGGGTTGGGGACGGCCGGAGGAGGCCGTCGCCGGGGCCCTCCGTGA
TGCGGAGCACCAGCTGTCGGAAAAGGAGCGGCGCGCCAAGGACTCTAGGG
AGCTTCGGCGGTTGTTTAATCGTTCCGTGCAGAGCGCCAAGAGGATCGCC
GAGAACCTCAGGTTCAGCAAGGCAAGACGAGTGTTTGGTTGATCCCCCCC
CTCCTTCCCCTTCTGTCGGTCGGTATGCGCCGGGAGGTTTTGTTCATTGA
CGAGGTACTTGGCGTATACCGCGCCGTGTTTGCCGCGCGTCGCTAGTTGC
TGGGGGGATTGAAAGTGACCGCCGTGTCTGTGAAAAGAGCCCCCCCCCCC
CAAGTGTCTTTTTTTTGCAAGGCGTCGAGCAAAAACTTGTGCGTGCTGGT
ACGACGATAGCTTACGCTCGAATCTTCCCCCAAGGGGTATCACCGCCGTG
GGCTCCTGTCGCGGTCTCTGCGACCTCTCGATGCGATCTCCTCTTGCGCT
TACCCTCCCCCCTGCTAAGTGTCAACTACTGAAAGGGGCAATACGGACCT
CCGACGTGTGCGAACCCTCCATCTCCTCTGTTTTTCTTGTTGCAGCAAGA
AGTTGGGTCTCTGCGGGGCGAGAAGGAGACCCTGCGGGACCAACTAGAGA
CGCTGCAGCGACACAACAAGGTGCTTTTGTCTAGATACACTCTGCTAGTT
AGTTCGGTTTCGCAGGGCTTGGGGGGGGGAGGAAATGTGCTTTATTGCGT
GTACACGATACATGTAGCAGCACATCTGCTTTCTCCTTCCGAAACGTCAG
CTACCTGTGTCTGGGCATGTGAGTCGTGAGCGTAACTTGCACCAACAAAC
GTAGCGCGGGGCTGCGCTCTCCTGCGGTTCGCGCACGGGGTTTGGCGTTT
CTGGTAAGCTCAAGCTTCAGTACTTATCCTACTCCCCCCCCGTACCCCTT
TGCTCCCCGCCGCGCCCCCCCCCCGTTGTTTTCTGCACAGTGGCTCTCCG
AGCGGGGCGAGACCCTCAAGACAGCTGTCTTGACCGCGGAGCGCGAGACT
TCGAGCAAGCGAGCGCTGCAGGCGCAGAGCGCGTCCGCCCTCGCGAGGAA
GAAGGCCGAGCTAGAGGCGGCCCGCGAGGAGACGGGGAGGCTCCGGGGGC
GGGTGAGGGCTTGCGGCGAAGGCGTTGCGTCGTTGTGTCAGATCGTTCGT
CCTTTTTGCTCCTTCCTTGGCCTCTCGCGGTTGTTTTGTGGCGTTCGCGT
GGTGCCACGGTTCTCGCTGTAATAGCTGTGGCTCGGTCTAGTTCGCGTTC
AGGTGTAGAGCAGAAGGAAACCAGGCAGCTCCCTGTCGTTTGTTGGTCGA
ACCGGGAGTGTCTCCCTTTTGCGTCCGTTTCGGGCAGAATGTTATGCTGC
ATGATTCAAGCATCTACCCTTCCTTGCGTGCTGCGCGGCTTGCTGAGCTC
GAGGTATTGCAGGCTCAAGCACAAAAAAAAAAAAAAAAAAAAGTGGAGGG
GTTCCGACGTTCCCTCGGTAGCACTGGGCATCCGTGGGTACGAACTAATG
TTTTTGTTTCATTGCGAGTGAGCCGCTCCGCTCCGAGCTCCATCCGTGCC
CTCCTTGTGACATCGCTCCTCTTCAACACGATCGCCGCGCCTGCCAACCG
TTCGAACTCCCGACCATCGACGGGCGACAGCTGGCTTCTTCGAAAGCTCG
CATGGCCGAGATGGTTGAGGCGAAAGCCGCCCAGGAGGCGCTGGCGGAGG
CGCTCCAGGGGACTGTCGACGGGCTCACGTCCGAGAAGGCCTCGGCGGCG
ATGGAGCTCGCCGCGGAGCGACTCGGAGCCCGGGCAGCCCGCGCAGAGGC
CGCCGACCTCGCCGAAAGGCTGGACGCAGCGGAGATGGCG
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig952:5351..7390+

>mRNA_S-firma_M_contig952.20510.1 ID=mRNA_S-firma_M_contig952.20510.1|Name=mRNA_S-firma_M_contig952.20510.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1536bp|location=Sequence derived from alignment at S-firma_M_contig952:5351..7390+ (Sphaerotrichia firma Sfir_13m male)
ATGGTCGCCTCCTGCGCCGTTGCCGCGGTGGTGGTGATCTGCGTGGCAGG
GCGCATCCGCAAGACGCGCCCGAGGCGGCAGTCGGCCCAGCGGCGGCGCG
CGCGGAGGCGACGCCCGGGGCCGCAACCTTTCGGCTGGCGGGTCTCGGGC
CGAGCGGGTTGGGGACGGCCGGAGGAGGCCGTCGCCGGGGCCCTCCGTGA
TGCGGAGCACCAGCTGTCGGAAAAGGAGCGGCGCGCCAAGGACTCTAGGG
AGCTTCGGCGGTTGTTTAATCGTTCCGTGCAGAGCGCCAAGAGGATCGCC
GAGAACCTCAGGTTCAGCAAGATGGTCGCCTCCTGCGCCGTTGCCGCGGT
GGTGGTGATCTGCGTGGCAGGGCGCATCCGCAAGACGCGCCCGAGGCGGC
AGTCGGCCCAGCGGCGGCGCGCGCGGAGGCGACGCCCGGGGCCGCAACCT
TTCGGCTGGCGGGTCTCGGGCCGAGCGGGTTGGGGACGGCCGGAGGAGGC
CGTCGCCGGGGCCCTCCGTGATGCGGAGCACCAGCTGTCGGAAAAGGAGC
GGCGCGCCAAGGACTCTAGGGAGCTTCGGCGGTTGTTTAATCGTTCCGTG
CAGAGCGCCAAGAGGATCGCCGAGAACCTCAGGTTCAGCAAGCAAGAAGT
TGGGTCTCTGCGGGGCGAGAAGGAGACCCTGCGGGACCAACTAGAGACGC
TGCAGCGACACAACAAGCAAGAAGTTGGGTCTCTGCGGGGCGAGAAGGAG
ACCCTGCGGGACCAACTAGAGACGCTGCAGCGACACAACAAGTGGCTCTC
CGAGCGGGGCGAGACCCTCAAGACAGCTGTCTTGACCGCGGAGCGCGAGA
CTTCGAGCAAGCGAGCGCTGCAGGCGCAGAGCGCGTCCGCCCTCGCGAGG
AAGAAGGCCGAGCTAGAGGCGGCCCGCGAGGAGACGGGGAGGCTCCGGGG
GCGGTGGCTCTCCGAGCGGGGCGAGACCCTCAAGACAGCTGTCTTGACCG
CGGAGCGCGAGACTTCGAGCAAGCGAGCGCTGCAGGCGCAGAGCGCGTCC
GCCCTCGCGAGGAAGAAGGCCGAGCTAGAGGCGGCCCGCGAGGAGACGGG
GAGGCTCCGGGGGCGGCTGGCTTCTTCGAAAGCTCGCATGGCCGAGATGG
TTGAGGCGAAAGCCGCCCAGGAGGCGCTGGCGGAGGCGCTCCAGGGGACT
GTCGACGGGCTCACGTCCGAGAAGGCCTCGGCGGCGATGGAGCTCGCCGC
GGAGCGACTCGGAGCCCGGGCAGCCCGCGCAGAGGCCGCCGACCTCGCCG
AAAGGCTGGACGCAGCGGAGATGGCGCTGGCTTCTTCGAAAGCTCGCATG
GCCGAGATGGTTGAGGCGAAAGCCGCCCAGGAGGCGCTGGCGGAGGCGCT
CCAGGGGACTGTCGACGGGCTCACGTCCGAGAAGGCCTCGGCGGCGATGG
AGCTCGCCGCGGAGCGACTCGGAGCCCGGGCAGCCCGCGCAGAGGCCGCC
GACCTCGCCGAAAGGCTGGACGCAGCGGAGATGGCG
back to top