mRNA_S-firma_M_contig951.20499.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig951.20499.1
Unique NamemRNA_S-firma_M_contig951.20499.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: D7G2H2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H2_ECTSI)

HSP 1 Score: 577 bits (1486), Expect = 3.570e-197
Identity = 331/468 (70.73%), Postives = 350/468 (74.79%), Query Frame = 1
Query:    1 ALLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTSNAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQ----------------VPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKARQEKESEERRVAGGDLDVEGQEDGGEEHAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------SGG-FPGALSGATGGGSALAQPKDLRVG--GGGGRGVGVVGAERSDHDDRPERGAGSKQAKRPGEADPSRER 1323
            ALLDIRFPDVS HGQGLHLMSYDD +RPWRKLTLWHAIKPSA +QA E  EAA NG SRSLGR  TTNLTSTTY+QTYVIMKPTGTE FGT+NAYRDVLFRFGSWCYSGTVQLTPTLAL DIPHVIPALRMQQSKLDFMCDV+Q                VPSKSPFAAPLE MQ LMPLMEE+VA+SEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTA T  TKE FRGVDLVASKSYSA+GVVTIGIWF D+YY++LG+GGEEQPLLDSRFPNVS KGRGYQIRAMT+GPEGWEELRKVSVWQTTAALQQEMEAKMIKA  EKES E R  G +LD   QE  GEEHAK                                      SGG FP          SA AQPK    G  GG GRG+G VGA+ ++HDDRP RG G  + KRP E    R R
Sbjct:  230 ALLDIRFPDVSSHGQGLHLMSYDDLRRPWRKLTLWHAIKPSAATQAMEAAEAAANGSSRSLGRPPTTNLTSTTYLQTYVIMKPTGTEEFGTNNAYRDVLFRFGSWCYSGTVQLTPTLALMDIPHVIPALRMQQSKLDFMCDVAQLSPILLRLNFLSEGLQVPSKSPFAAPLEHMQRLMPLMEEQVASSEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAATTATKEEFRGVDLVASKSYSAQGVVTIGIWFEDSYYIVLGEGGEEQPLLDSRFPNVSAKGRGYQIRAMTKGPEGWEELRKVSVWQTTAALQQEMEAKMIKAG-EKESAETRAGGSELDGGQQE--GEEHAKATSTMMIEGGAASAANEQGGSRGAGWAGGDRADPAIGGSGGXFPXXXXXXX---SAQAQPKHSGAGDRGGVGRGIGAVGADGNNHDDRPSRGGGVHELKRPWETGAIRGR 691          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A6H5KIB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB2_9PHAE)

HSP 1 Score: 418 bits (1075), Expect = 6.670e-140
Identity = 269/496 (54.23%), Postives = 291/496 (58.67%), Query Frame = 1
Query:  142 EEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTSNAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKARQEKESEERRVAGGDLDVEGQEDGGEEHAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGFPGALSGATGGGSALAQPKDLRVG--GGGGRGVGVVGAERSDHDDRPERGAGSKQAKRPGEADPSRERSIGLEAGSKYGGGGGPLAVSPTSASAGPKSESALGMERHHAAAKALTSTKVALPHHLSPMAGLEDKLKKMRTDMQNESGDAPWDAFGRPRTALLGAKQHK 1623
            E  EAA NG SRSL    TTNLTSTTY+QTYVIMKPTGTE FGT+NAYRDVLFRFGSWCYSGTVQL PTLAL DIPHVIPALRMQQSKLDFMCDV+QVPSKSPFAAPLE MQ LMPLMEE+VA+SE VLTDLL+ LSDMGLEDSVSSWFDGDSMQSFFEFQ       +    G                             G  GEE     S    +  +G    +     G  G       + W                            A GDL                                            +    G   G TGGGSA AQPK    G  GG GRG+G VGA+  DHDDRP RG G  ++KRP E D  R R+ GLE GSK  GG  P  VS  SASAG KS   +G ERHHAAAKALT+TKVALPHHLSPM GLEDKLK+MR+DMQNE+GDAPWDAFGRPRTALLG KQHK
Sbjct:    2 EAAEAAANGSSRSLAGPPTTNLTSTTYLQTYVIMKPTGTEEFGTNNAYRDVLFRFGSWCYSGTVQLIPTLALVDIPHVIPALRMQQSKLDFMCDVTQVPSKSPFAAPLEHMQRLMPLMEEQVASSEAVLTDLLENLSDMGLEDSVSSWFDGDSMQSFFEFQAGEKESAETRTGG-----------------------------GQEGEEHAKATS---TMMVEGGAASVTNEQGGSSG-------AGW----------------------------ASGDL--------------------------------------------ADPVIGGSGGTTGGGSAQAQPKHSGAGDRGGVGRGIGAVGAD-GDHDDRPSRGGGIHESKRPWETDAIRGRTNGLETGSKDSGGD-PPGVSQASASAGAKSGPVIGNERHHAAAKALTNTKVALPHHLSPMTGLEDKLKRMRSDMQNENGDAPWDAFGRPRTALLGTKQHK 384          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A836C9I4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I4_9STRA)

HSP 1 Score: 348 bits (892), Expect = 7.680e-109
Identity = 184/326 (56.44%), Postives = 225/326 (69.02%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNG------GSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTSNA----YRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTA-----DTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKA 936
            LLD+RFPD+S HGQGL + +Y     PW+KLTLWHA+ P                       + +LG +   +L ST Y+QTYV+M P          A    YRDVLFRFGSWCY G +QL P L+LADIPHVIPALR+QQ++LDF  DV+ VP++SPFA PL  ++ ++P ME E+AASE VL+DLLD LSDMGL DSV+ WFDGD+ Q+FFEF  A        +  + FRGVDLVASK Y+A+GVV I IWF  T+YV+LGDGG EQPLLDSRFP+VS +GRGYQIRA   G + W  LRKVSVWQT AALQ+EM+A+M KA
Sbjct:  220 LLDVRFPDISAHGQGLLIQTYAASAAPWQKLTLWHAVAPGGXXXXXXXXXXXXXXXXXXXPAATALGPSDMRSLASTNYIQTYVVMAPARGSXXXXXXAEARKYRDVLFRFGSWCYGGAIQLAPALSLADIPHVIPALRVQQARLDFAFDVAAVPARSPFARPLAHLERVLPAMEAEIAASESVLSDLLDTLSDMGLGDSVAGWFDGDAAQTFFEFAVAEGGGAGGEEEADVFRGVDLVASKCYTAQGVVLITIWFQGTFYVVLGDGGSEQPLLDSRFPDVSGRGRGYQIRATPTGRDDWPGLRKVSVWQTAAALQREMDARMAKA 545          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A6U1P8Q3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P8Q3_9STRA)

HSP 1 Score: 322 bits (826), Expect = 1.500e-99
Identity = 165/321 (51.40%), Postives = 233/321 (72.59%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTG---TEAFGTS----NAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKARQE 945
            LLD+RFPDVS+HGQGL + +Y  P+  +RKLTLWHA+  + G  A   +          +   Q TNL+S  Y+QTYV+M+P+    T + G++    N     LFRFGSWCYSG VQLTP L+L DIPHVIPALRMQQ +L+F+CDV+++PS+SPFAAP++R+  L P++EEEV ASE+ L+ LL+++  MGL  SVSSW + DS  SFFEFQ +P +D  E F+ V+++ASK Y A+GV+ I +++  T YV++ +G  EQPLLDSRFP+VS++GRGYQ+++   G +GWE+LRKVS+WQT A+LQ E++ +  +A+++
Sbjct:  185 LLDVRFPDVSRHGQGLTVGNYPQPEFNYRKLTLWHAV--TLGMPALVPQ----------IRDKQLTNLSSDNYLQTYVVMRPSALGLTSSAGSTSVPGNTSHAALFRFGSWCYSGHVQLTPVLSLKDIPHVIPALRMQQGRLEFLCDVTKMPSRSPFAAPMKRLLDLTPIIEEEVMASEDTLSHLLERMESMGLGPSVSSWLNSDSSSSFFEFQVSPYSDDDEVFKDVEVIASKCYHAQGVIMITVYYQRTIYVVVQEGTNEQPLLDSRFPDVSSRGRGYQVKSYDSGRDGWEQLRKVSIWQTQASLQAEIQQREQQAKEQ 493          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A7S3HBV8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBV8_9STRA)

HSP 1 Score: 313 bits (803), Expect = 5.210e-95
Identity = 164/309 (53.07%), Postives = 210/309 (67.96%), Query Frame = 1
Query:    1 ALLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTSNAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGP-EGWEELRKVSVWQTTAALQQEMEAK 924
            ALLD+RFPDVSQHGQGLH+ +Y+D   P+RKLTLWH +  SA  +  +E           + + +T N+++  Y QTY I+K        T   + DVLFRFGSWCY G VQLTP+L+LADIP VIPALRMQQS+LD++CDV+QVP+ SPFA  L  +Q + PL+EE++  SE+ L DL+D+L+ MGL DSVS W +GD   SFFEF+  P     EAF+ V+L+ SK Y A G++ I I +  T YV L D   E PLLDSRFP+VS KGRGYQ++A  +G  E W  LRKVS+WQT  AL+QE   K
Sbjct:  190 ALLDVRFPDVSQHGQGLHIDTYNDHTTPYRKLTLWHVLGTSATKKLPKE-----------MPKIRTINVSTKNYQQTYCILKSAWDNNSPTLTVHHDVLFRFGSWCYCGRVQLTPSLSLADIPFVIPALRMQQSRLDYLCDVNQVPTTSPFAPALAYVQNITPLVEEQIIDSEKTLQDLIDRLTGMGLGDSVSKWLEGDPQNSFFEFKIVPDEAISEAFKNVELIVSKCYYASGIIAITIIYQFTVYVSLLDNNGESPLLDSRFPDVSGKGRGYQLQAYNDGDREDWPSLRKVSIWQTVNALEQEFREK 487          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A8J2S959_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S959_9STRA)

HSP 1 Score: 313 bits (802), Expect = 2.210e-92
Identity = 165/315 (52.38%), Postives = 223/315 (70.79%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQ--TTNLTSTTYMQTYVIMKPTGTEAFGT--SNAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKA 936
            LLD++FPDVS  GQG+H+ +Y   QR W KL LWH++        A++    V+G  RS  + Q  TTNLT+ +Y+Q Y ++K +  E   +  S A+ DVLFRFGSWCY+G+VQLTP L LAD+PH+IPALRMQQS+LDF+CDVSQ+P  SPFA P+    ++ P ME+E+  +E VL  LL +L    +  SVSSW +GDS QSFFEFQ +   + ++AFR V+L+A+K+Y+A GVV I I+F  T+YV+LG+   EQPLLDSRFP+VS KGRGY + +  +G   W +LRKVS+WQT AA+Q E+EA+ +KA
Sbjct:  277 LLDVKFPDVSCPGQGIHVATYGGEQRTWLKLALWHSL--------AQDPSRQVDGPRRSSPQKQPKTTNLTTDSYVQMYTVLKASKDEKVQSVGSTAHHDVLFRFGSWCYAGSVQLTPLLDLADLPHLIPALRMQQSRLDFICDVSQMPLSSPFAKPMGYFASIAPAMEKELVQAEGVLAKLLAQLDRFEVGGSVSSWLEGDSTQSFFEFQMSQDKEVEKAFRNVELLAAKTYTATGVVLIAIYFQGTFYVVLGETTGEQPLLDSRFPDVSAKGRGYLVSSYGDGTMTWPQLRKVSIWQTAAAMQSELEARGVKA 583          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A7S4D7F3_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7F3_HETAK)

HSP 1 Score: 305 bits (782), Expect = 7.120e-92
Identity = 171/339 (50.44%), Postives = 218/339 (64.31%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQ----------RPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMK-PTGTEAFGTSNAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDM--------------------GLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKM 927
            LLD+RFPDVS+HGQGLH+ +Y              RPW KLTLWHA  PS G  A   +          +   Q  +L+S  Y+Q+YV+M  P G     T    R  LFRFGSWCYSG V LTPT+ L DIPHVIPALR+QQ++L +MCDV+++P++SPFA PL RM    PL+E EV  SE VL  L++K+  M                    GL  SVS+W + D+  SFFEF  APT D + AF GVDLVA+K Y ++G+V I ++F  T YV+L +GGE+QPLLDS+FP+VS KGRGYQ++A + G EGW ELRKVSVWQT A+LQ E++A+M
Sbjct:  261 LLDVRFPDVSRHGQGLHVHTYTPTWPTSTGAAGAGRPWAKLTLWHA--PSLGMPALVPQ----------IRDKQLLDLSSDAYLQSYVVMAAPPGAAQPATQ---RQALFRFGSWCYSGEVTLTPTITLKDIPHVIPALRLQQNRLSYMCDVTKMPARSPFAPPLARMLEYTPLVEREVVESESVLQKLVEKMETMAAPGAMLSPTAAAMLYSTPQGLGASVSNWLESDTANSFFEFTMAPTEDARAAFEGVDLVATKCYQSQGLVLITVYFKGTIYVVLKEGGEDQPLLDSQFPDVSGKGRGYQVKAYSAGAEGWPELRKVSVWQTQASLQAEIQARM 584          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: F0Y4X5_AURAN (Rad51 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4X5_AURAN)

HSP 1 Score: 306 bits (785), Expect = 3.240e-90
Identity = 162/312 (51.92%), Postives = 209/312 (66.99%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTE-AFGTSNAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKA 936
            LLD++FPDVSQ GQG+H+ +Y    R W KL LWH++           E A            +TTNL + +Y+Q Y ++K T    A   +NA+ DVLFRFGSWCYSG+VQLTP L LAD+PH+IPALRMQQS+LDFMCDVS +P  SPFA P+     + P++E E+ A+E VL  LL +L+   +  SV+SW +GDS QSFFEFQ A   D +  F+ V+L+ASK Y+  GVV I I+F  T+YV LGD   EQPLLDSRFP+VS+KGRGY I +  EG   W +LRKVS+WQT +A+  E+EA+  KA
Sbjct:  203 LLDVKFPDVSQPGQGIHVANYAG-DRTWLKLALWHSLAA---------ENAPTRSSPTPAQSPKTTNLATDSYIQMYTVLKATEERGAAARNNAHHDVLFRFGSWCYSGSVQLTPMLDLADLPHLIPALRMQQSRLDFMCDVSAMPMNSPFARPMSYFSKVAPVLERELVAAEAVLAKLLQQLAQFEVGGSVASWLEGDSTQSFFEFQLALDKDLERVFKNVELLASKCYNPNGVVLIAIYFLGTFYVALGDSAGEQPLLDSRFPDVSSKGRGYLIASYAEGTPAWPQLRKVSIWQTASAMAAELEARGAKA 504          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A7S3NQS8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQS8_9STRA)

HSP 1 Score: 270 bits (691), Expect = 8.160e-79
Identity = 142/305 (46.56%), Postives = 206/305 (67.54%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTS-NAYRDVLFRFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTA-DTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQE 912
            LLD++FPDVS+ G G+HL  Y D    + KLTLWH++  +  + + E   +      +   + +TTNL+S +Y+Q Y+I++    E        + DVLFRFGSWCYSG+VQLTP L L  +PH+IPALRMQQ++LDF+CDV+Q+P+ SPF   +  +  + PL+E E+A +E+ L  L+ +L+ + L  ++++W +GD  +SFFEFQ  P+  D +  FR V++VA+KSY A GVV I + F +T YV + D   EQPLLDS+FP V+TKGRGY I +  +G +GW ELRK+SVWQ++ AL+ E
Sbjct:  203 LLDVKFPDVSRPGGGVHLRDYYDD---YTKLTLWHSLTHTIVTDSKETVSSLQKQTEKK--KKRTTNLSSQSYVQMYIILRAIADEPDKPPITPHHDVLFRFGSWCYSGSVQLTPELDLGSVPHIIPALRMQQARLDFLCDVNQMPTNSPFTKSMAYLCRIAPLVEIELAKAEDTLQKLILQLAAVDLGGTIATWLEGDGNRSFFEFQLEPSEKDIQSHFRNVEMVATKSYGAAGVVLISVLFNNTLYVTVADNATEQPLLDSKFPEVATKGRGYLIASYPDGVQGWPELRKLSVWQSSIALEAE 502          
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Match: A0A7S2D1T8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1T8_9STRA)

HSP 1 Score: 261 bits (666), Expect = 1.480e-75
Identity = 150/330 (45.45%), Postives = 210/330 (63.64%), Query Frame = 1
Query:    4 LLDIRFPDVSQHGQGLHLMSYDDPQRPW-RKLTLWHAIKPSAGSQAAEEEEAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTS--NAYRDVLFRFGSWCYSGTVQLT-PTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSPFAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDSMQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVMLGDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAALQQEMEAKMIKARQEKESEERRVAGGD 981
            LLD++FP+VS HG+G+ L +  +    W  +LTLWH++                    R L    T +L+ST+Y+Q Y +MK +  E  G    +AYR+VLFRFGSWCY G++QL   ++++ ++PHVIPALRMQQ +L+F+    QV + SP+A P+E + + +P ME E+  +E+VLT L+ +LS  GL DSVSSW  GD  QSFFEFQ +P    +   RGV+L ASK Y A GVV I ++F ++++V + D   EQPLLDS+FP+VS KGRGYQI+   EG   W  LRKVS+WQ+  A+++EME ++ K  Q       R AGGD
Sbjct:  220 LLDVKFPNVSHHGEGIKLRTPVETMPAWFLRLTLWHSMPSDL----------------RVLP-PPTRDLSSTSYIQMYFVMK-SRIENGGMEEPSAYREVLFRFGSWCYGGSIQLKIGSVSIEELPHVIPALRMQQQRLEFVYAADQVLTTSPYAKPMEYIMSHLPFMENEITNAEDVLTALVQRLSARGLADSVSSWIQGDPSQSFFEFQCSPQHGEQATLRGVELCASKCYYASGVVLIIVYFQNSFFVTIADASTEQPLLDSKFPDVSQKGRGYQIQVYPEGSSDWPSLRKVSIWQSKDAMEEEMEERVAKEDQA------RAAGGD 525          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig951.20499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2H2_ECTSI3.570e-19770.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIB2_9PHAE6.670e-14054.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9I4_9STRA7.680e-10956.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1P8Q3_9STRA1.500e-9951.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3HBV8_9STRA5.210e-9553.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A8J2S959_9STRA2.210e-9252.38Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A7S4D7F3_HETAK7.120e-9250.44Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
F0Y4X5_AURAN3.240e-9051.92Rad51 domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S3NQS8_9STRA8.160e-7946.56Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2D1T8_9STRA1.480e-7545.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig951contigS-firma_M_contig951:367..6870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score587.8
Seed ortholog evalue5.2e-165
Seed eggNOG ortholog2880.D7G2H2
EggNOG OGs2CNDG@1,2QVEC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005960.1
Exons11
Model size1626
Cds size1626
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828785.6887662-CDS-S-firma_M_contig951:366..4871622828785.6887662-CDS-S-firma_M_contig951:366..487Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 367..487 +
1697105161.3849344-CDS-S-firma_M_contig951:366..4871697105161.3849344-CDS-S-firma_M_contig951:366..487Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 367..487 +
1622828785.7055843-CDS-S-firma_M_contig951:870..10511622828785.7055843-CDS-S-firma_M_contig951:870..1051Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 871..1051 +
1697105161.3968716-CDS-S-firma_M_contig951:870..10511697105161.3968716-CDS-S-firma_M_contig951:870..1051Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 871..1051 +
1622828785.720393-CDS-S-firma_M_contig951:1541..16711622828785.720393-CDS-S-firma_M_contig951:1541..1671Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 1542..1671 +
1697105161.4073296-CDS-S-firma_M_contig951:1541..16711697105161.4073296-CDS-S-firma_M_contig951:1541..1671Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 1542..1671 +
1622828785.7373002-CDS-S-firma_M_contig951:1977..21031622828785.7373002-CDS-S-firma_M_contig951:1977..2103Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 1978..2103 +
1697105161.420988-CDS-S-firma_M_contig951:1977..21031697105161.420988-CDS-S-firma_M_contig951:1977..2103Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 1978..2103 +
1622828785.7557514-CDS-S-firma_M_contig951:2596..26621622828785.7557514-CDS-S-firma_M_contig951:2596..2662Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 2597..2662 +
1697105161.4297178-CDS-S-firma_M_contig951:2596..26621697105161.4297178-CDS-S-firma_M_contig951:2596..2662Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 2597..2662 +
1622828785.7727208-CDS-S-firma_M_contig951:3238..34021622828785.7727208-CDS-S-firma_M_contig951:3238..3402Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 3239..3402 +
1697105161.4433825-CDS-S-firma_M_contig951:3238..34021697105161.4433825-CDS-S-firma_M_contig951:3238..3402Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 3239..3402 +
1622828785.7888973-CDS-S-firma_M_contig951:3767..39221622828785.7888973-CDS-S-firma_M_contig951:3767..3922Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 3768..3922 +
1697105161.4515746-CDS-S-firma_M_contig951:3767..39221697105161.4515746-CDS-S-firma_M_contig951:3767..3922Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 3768..3922 +
1622828785.8076904-CDS-S-firma_M_contig951:4123..43151622828785.8076904-CDS-S-firma_M_contig951:4123..4315Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 4124..4315 +
1697105161.4598289-CDS-S-firma_M_contig951:4123..43151697105161.4598289-CDS-S-firma_M_contig951:4123..4315Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 4124..4315 +
1622828785.8213835-CDS-S-firma_M_contig951:5094..52891622828785.8213835-CDS-S-firma_M_contig951:5094..5289Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 5095..5289 +
1697105161.4693592-CDS-S-firma_M_contig951:5094..52891697105161.4693592-CDS-S-firma_M_contig951:5094..5289Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 5095..5289 +
1622828785.835563-CDS-S-firma_M_contig951:5774..59171622828785.835563-CDS-S-firma_M_contig951:5774..5917Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 5775..5917 +
1697105161.4866765-CDS-S-firma_M_contig951:5774..59171697105161.4866765-CDS-S-firma_M_contig951:5774..5917Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 5775..5917 +
1622828785.8506753-CDS-S-firma_M_contig951:6717..68701622828785.8506753-CDS-S-firma_M_contig951:6717..6870Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 6718..6870 +
1697105161.5091403-CDS-S-firma_M_contig951:6717..68701697105161.5091403-CDS-S-firma_M_contig951:6717..6870Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig951 6718..6870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig951.20499.1prot_S-firma_M_contig951.20499.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig951 367..6870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig951.20499.1

>prot_S-firma_M_contig951.20499.1 ID=prot_S-firma_M_contig951.20499.1|Name=mRNA_S-firma_M_contig951.20499.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=542bp
ALLDIRFPDVSQHGQGLHLMSYDDPQRPWRKLTLWHAIKPSAGSQAAEEE
EAAVNGGSRSLGRAQTTNLTSTTYMQTYVIMKPTGTEAFGTSNAYRDVLF
RFGSWCYSGTVQLTPTLALADIPHVIPALRMQQSKLDFMCDVSQVPSKSP
FAAPLERMQALMPLMEEEVAASEEVLTDLLDKLSDMGLEDSVSSWFDGDS
MQSFFEFQTAPTADTKEAFRGVDLVASKSYSARGVVTIGIWFGDTYYVML
GDGGEEQPLLDSRFPNVSTKGRGYQIRAMTEGPEGWEELRKVSVWQTTAA
LQQEMEAKMIKARQEKESEERRVAGGDLDVEGQEDGGEEHAKATTTMAVG
GAATSEMGGSRSGGRAAAAVGGSGGFPGALSGATGGGSALAQPKDLRVGG
GGGRGVGVVGAERSDHDDRPERGAGSKQAKRPGEADPSRERSIGLEAGSK
YGGGGGPLAVSPTSASAGPKSESALGMERHHAAAKALTSTKVALPHHLSP
MAGLEDKLKKMRTDMQNESGDAPWDAFGRPRTALLGAKQHK*
back to top

mRNA from alignment at S-firma_M_contig951:367..6870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig951.20499.1 ID=mRNA_S-firma_M_contig951.20499.1|Name=mRNA_S-firma_M_contig951.20499.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=6504bp|location=Sequence derived from alignment at S-firma_M_contig951:367..6870+ (Sphaerotrichia firma Sfir_13m male)
GCCCTTTTGGATATCCGGTTCCCGGATGTTTCCCAGCATGGGCAAGGGCT GCATCTCATGTCCTACGACGACCCACAACGCCCGTGGAGGAAGCTTACCC TTTGGCACGCTATCAAACCCTGTGAGTATTTATTTCGGTCGCGCACGAGA ACCCGGAACGAAGCTTGTTATCAAGATATACTTAAAACAGAATCTGTGTT TTTCTTGGCATTTCGACCAATATTTTGGCCTGGTGTGTACTTTGTATCGT CGAGAAACGTAGTTTCATGGTTTGGCAACTGTCCGTTTCTTGAAAATACA CGGCAGTTTCGTCAGTCACCCAACGCTTGGGACACAGAAGATGTACCACG CAAAAGCGGGTTCTTTGCTGCTGTTCAGGCGTCAGGTATACCTCAACCGC CTGCCCCCTTCGCTTCCTTCCTTTCGCCGTTTCATCATCCCGAAAACGAC GGCGTATCCATCTTGGGCATCGATCGTACCGCCATTTTCGGAATGAACCA CCAGCCGCCGGGAGCCAAGCGGCGGAGGAAGAGGAGGCAGCGGTGAACGG GGGCTCGCGATCTCTGGGAAGGGCGCAGACAACCAACCTCACCTCCACGA CCTACATGCAAACGTATGTCATCATGAAGCCCACGGGAACGGAGGCGTTC GGCACCAGCAACGCCTACCGGGATGTACTGTTCAGGTGCGTCTCTCATTT CGTCCCCAAGCCAGGTTTACAGGAATACCACATGTAAAATCAGCGTGAAC TCTGTGGTGGTGGTGCGTACCAGTAGTTGTGTGGGTCGCGCATAAGATTG TGCGAGAAAAGACCCCAAGCTTGAAAGGGGGCGAAGCGCTACGACATCCG CAGCTACACCAGAAAGTCCTTATGTAAGCCAACCGGACGACCGTCGTCAG GAATCGGTTCATCCACGACGACTGAGTGCGATGACTGGTCGCGGCTCGCA ACCTTTACCATCGGTTCCGAACATAGCAGCGGCAAAGTTGTTATTGTACC TCTCAAGAAACACACCGGAGGTATCAACCAAGTAGCCCGAGGCTCTTCTG ATGTTTCTATTCAGAGAGAGTTGGATCTACGGCCTGGTTGCCCATACAAG CGTTCTCCGCGTCTCCCGCAGCTAGAACCAGCGAGTTCATTCGCCACGAA ACCGAAACACCAATGTGCATGCCAGGTTTGGAAGCTGGTGCTACAGTGGA ACCGTGCAGCTGACTCCCACCCTGGCGCTAGCGGATATTCCACACGTCAT CCCGGCCCTGCGTATGCAGCAGAGCAAGTTGGATTTTATGTGCGACGTCT CGCAGGTTAGTCGGAAGTGTTCATTTTGGAAATAGGCGTGCCACCTGGTC TTCCGCCCCGCCGGTCGACCGACCCCCCACTTCCACACCCTTGTTACGTC TCTCTATTTCTCTAACTCTTGCCGTTTTTTTCGACCCGATGGTTGCTTCG ATGGCGTCCGAACTCTGTACATCCTTGCCAGATCTCTCAATGAAAAACAA GTTGTTTTAGTACTTGTAGTGTCAAGATGGAAACCTGAAAATCCTGTAAA CAGCTTACCGGTCGTTGTGCGGGGCCCAATCTTTAGGTCGGTTTGTCTTC TTTTGTTGCAGGTTCCATCCAAATCTCCCTTCGCGGCCCCTCTGGAGCGC ATGCAAGCGCTGATGCCCCTCATGGAGGAGGAGGTTGCTGCCTCCGAAGA GGTGTTGACTGATCTCTTGGATAAGCTCTCCGATATGGTGAGACAGCCAA ACGGCGACCGAAACCCGGAAGACCGCGAACGGAGGCACAGGGTGGGGATA CGGGGTATACGAAGAGTATGATACAAGCCGGGCGGGGTAAGGCCATGCAC CAATCAGAGTTTGCTAAGGAGTGTTCTCTGCTGTATTTTTTCACAGTGTT GGAGCTGTTCCGCGCAGGGATGACGTTTCTACGATGGTCATGCTGTAAGG TGAAATCTAGTTTTCAGCGCGCACGCCCAAAGATTAAATTGGCGACGCGC CCCCAGGTTTTCTAGTATCCCGGGCAGGATATATCTCAATGGAAATCGGA GCGGACGGGACGAAGACAAGAAATGTCCCGATCGAAGCAGAAGTTCCAAG GGCGCGCATGGTATCATGGCGCTCTCTTGGTGTGATACACTGTTACCTCC CCCCCACCCCCTGTCAAACCCTACATCAACAATTCGGAAGAAATAGACGC CCGCCGTTGTCCTTGGCTGTCGTCTATCAGGGGCTGGAGGACAGCGTGTC GTCTTGGTTCGACGGTGACAGCATGCAGAGCTTCTTCGAGTTTCAGGTGA TTAGTTCTCGTTACGATCGGCCTCAAAGCACCCTTTATCCACCAGCCACA GCAGCAGTGCTCCTCCCAATCAGTGTTTTCTTAGACCCCCCCTGATCTCC CTCAGAGTCATTCCTTCCAGTACTCCCACGTCGATGGGCCCAGATTGCGA TGTTTGACTCAAATTTCTCAATCGGGATATTCTAAACAATGGTGTCGTCT CAGCTGAGGTATCCTACTCTTACCCTTGCCAGGCGATGGCCTTTCGGCGG GTGCTCAGAAAGGAAGCGCGGCAGCTCCAACTTCAAATTGTTAGGGTTGG CGTAGAAAAGGAGCGACCTCCAAGGCTTGCGCTACACGCCGTAGACGTAC TACGGCAGCATCCGTTTCGAGGCCAGTTTTGAGTTCCTCTCTGGTGCTGC TGCTGTTGCCCCGGTGCCTTGCTATCCATTTCTTGCGGGAACCTTTCTCT GGCCTTCCAGCCAGTTTACATTCGCAAAGAGTACGTTTTGCGTGCTCTAA AACAACGCAGACCTCAACCTTCCCGACAACTCCGCCGCCCGCCTTGTTCC CCGCACCTCAAACGCCCAATAGACGGCACCCACGGCGGACACAAAAGAAG CGTTTCGGGGGGTAGATCTGGTCGCTAGCAAGTCCTACTCCGCCCGGGGC GTGGTGACGATCGGAATCTGGTTCGGGGACACGTACTACGTCATGCTCGG AGACGGGGGCGAGGAGCAGCCGTTGCTGGATTCCAGGTGCAGTATACTAT GTACATCGAAGCAGCATGAGCTCTGTTTCGTTCAGGGCGCCGTGACGGTA GCGTTTCACGTGTTTACGTAGTACGTTGCGCCAATATAGGTGCCTGTTTC GATAGGAGGTAACCACAGTTGTGGCAGGGGAGGGTGCCACCTAAGGGTCC AGTGGTGTGTTTCCACGTATCCTCCGCCGTGGTCCTCTTTACCTGTAGCC CCCCTTGTTCTGATGTGCTTTCGGTGCTGACTCGCGCCGTTCTGAACGCA AGAGAAAAACACTGCCATATTTTGCCATATTTCGCCCAGGGTTGACGCTC TACATGCACCCCGTCTTGCATGCGCGATGCTCTGACCACACTACCGCAAA GGTTTCCAAACGTGTCGACAAAGGGGCGGGGCTATCAGATCCGCGCTATG ACAGAGGGGCCGGAAGGGTGGGAGGAGCTGAGGAAGGTGTCGGTGTGGCA GACGACGGCGGCGCTGCAGCAGGAGATGGAAGCAAAGATGATTAAGGCAA GACAAGGTGGTTGGGAACAATTTTTCGGAGTGGAAGAGTCTTTTATCAAC GGAAGTGCATTCTTTGATGTCCAATTCGTAATCGTTTCAGGCTTGTTCTG CCAAGCTAAGTGTTCCAACGAAACCGTGCCCCCCCCCTCTGACTCCTACT GCCTCGTTCCTTGACTGACCAATGTGTACACATATCTTGCGCTAAGCCAG GCGGGAGAAAAAGAGAGCGAAGAGAGGCGGGTGGCGGGTGGCGACCTTGA TGTGGAGGGGCAGGAGGATGGCGGGGAAGAACACGCCAAGGCGACCACGA CGATGGCGGTTGGGGGAGCCGCAACCAGTGAGATGGGGGGGTCGAGAAGC GGCGGCCGAGCAGCGGCGGCGGTGGGAGGGAGCGGTGGGTTCCCGGGCGG TGCGTTTCCTTGGTTATTGAAACTTCGTGCGTACGGTGCACACGTTGAGC GGTTGGTAGATTAAAGGCTTGAAGGTTGCTTGTTGGTTGTGGTGTTGCAC ACCTCAATGAGTGTTCACGGCTGGTTTGAGTGGGGACTGTCTTCACCACC GTCGGTTGATTCGAAACCAAAAACAGCGGTAAGCCCTGATGGAGCACACG CTACTTTCCGTTCGCAGGCTCTCTTTGGAGGTACACATTCTCTCTCTCTC CTTGTGTGTGTGTCTCTCTCTCGCTCTCTGTCTCTCTACCCCCGCGTTGT CTCCAACAAACCCGCAAGAATATCTCATGACCAGCCCGACCGTACAACTT CGGCGTTTCACGAGACAAGGAATATTTGTTGGAAATGCCATTAACTTGTT TCTCGTTTGTTCGTTGAAATTCTCACGGAAAGTCACCCGTTCCCGAATTT TTCGAACTGGTGGGTTTGCGCATGACTTCCGAGAACTGCGAGAACGACTG GACCTTGATTGCGAAACCCGCTGGGCGCGTTCCTGATCGAGCTTGTGGCG CAAACCGCACAGTTTATCTACTATCCGGTGGTAGCATACCATAGATGCGA TCACGCGAACCAACAAGCGGGAGGGTGTGGCAAGAGCGAACACACAACCT GATGCACCCTCAACTACGAATGACTAACTTTCGCCTTGGAAAAGATCCAA CCTCGCGTCCATTCAAATCAAACACTGACCGGGGCTGACGCCTGCTTTTC CATCTCATGAAAACATGAACGCTTGAAGCGTTATCCGGTGCCACAGGCGG GGGGAGCGCACTGGCTCAACCAAAGGATTTAAGGGTGGGAGGGGGAGGGG GCCGGGGCGTCGGTGTGGTTGGGGCAGAAAGGAGCGATCACGACGACAGA CCTGAGCGAGGAGCGGGGAGCAAGCAGGCGAAGAGGCCTGGGGAGGCAGA CCCGTCTCGCGAGCGTAGCATCGGTGGGTTTTTGCTGAGTTTAGCGCGCC TCCTCCAAACATAAACAAACCCAGTGTAACACCGCGGACCATTTCCGAGG AGGACTCAATCAAGACACCGCACATCGGCTTTTGCTGGTTATTTTCCCCC GTCGGACGGAGTACAACGCGTAAGCACTTAGGAGCGCTCGAAGGCAACAA GGTCTCGCCGTCCAAAACGCATAGAAATCACTCGCACGTTCTTCCCTGGC CGGTCGCGACAAAACGCCCGCGTTGAAACATCTTGCACACGAAAGGCAGA CAACAGCCATGCTTGCAGCAAGAACAAGAACAAACGCCGTCACTTTTGTT CTCAAGTCCGCGGTATGTAGTTCTTGCCCTTCACTGCTTCGAAGAACTAG CCCAGTACTGCGCAACTTGAAGGTCTTCGTTTTTTTCGACAGCAGTACAT ATACGTATAACCTGTGTCTGGGTTCCACCTTGATGTACTGTCTGTGCTTC GTTGGCAGGCCTCGAGGCCGGAAGCAAGTACGGCGGCGGCGGTGGACCCT TGGCCGTCTCGCCAACTTCGGCCTCCGCCGGACCCAAGTCTGAGTCGGCG CTCGGCATGGAACGTCATCACGCCGCCGCGAAAGCGCTGACCAGTACCAA GGTACGTAGAGCGCCCTGCATATTACCGAATTGTGTAATGGCGAAATGTG CACGCGGCAGTGTTTTGGCTACAGGTATTTCGTGGTGGGAGAGACCTCCA GCTGAAAGCATCGTTGATGTTGCGAACCCTCCTCTGGAACACGAAACGCT CACCTCCCGCGCAGGGATTGAGTGTGGAGATATGAGGTTTCAATGTGGTG ATGCGTGCTTGAACAGAAGGAGCATCCAGTGCGTATCTTTTCAACCGTCG ACGTGTGGATTCCTGTTCCTTCATCTATCTTGCTTCTGTGTTTGCTCGAC GGAGATGGCGATAGCGCCGTTCAGTTCCATCAAACCTATTTTGAATGCGG TTGATGCGCTCCGAAATGGCGTTGTAAGATTCCTCGTTCGGGGGTTGCTA CATGTACAGTATTTCTGCGTGGGCAGGCGCTTCGCTCGTACCCTACGTGT GTGCCAAACGGTAAGAGGCTGATATAACACCGGGGGAGAGCCCTCAAAGC TCTGCCCAATACGGCGGGATACTATTCGCACATACCTCTGATATTTTTTT TTGTACCTCTGAAGTATGAACACGTGTTTCTATTTTCGAGGGTGCGACCT AAACATGACGTCGAACCTGTCGCAGGCACCTAAAGCAAGTTTTAAATCAC AGCAGTGCAAGTACGTGCTCCTACAAAAAAACAAGACACCTAGACTACAC AGTAGTGTACGATATTTACTCGGAGTAGTGTAGACACAGCTCATACAGCT GACGTACGACGTGACGCGTCTCTCGATGCTTCCCCAAAAAACACGACGCA GGTCGCCCTTCCACACCACCTTTCACCAATGGCTGGCTTGGAAGACAAGC TCAAAAAGATGCGCACGGACATGCAGAACGAGAGCGGGGACGCCCCGTGG GATGCATTCGGCCGACCACGCACTGCTCTCCTAGGGGCCAAGCAGCACAA ATGA
back to top

Coding sequence (CDS) from alignment at S-firma_M_contig951:367..6870+

>mRNA_S-firma_M_contig951.20499.1 ID=mRNA_S-firma_M_contig951.20499.1|Name=mRNA_S-firma_M_contig951.20499.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=3252bp|location=Sequence derived from alignment at S-firma_M_contig951:367..6870+ (Sphaerotrichia firma Sfir_13m male)
GCCCTTTTGGATATCCGGTTCCCGGATGTTTCCCAGCATGGGCAAGGGCT
GCATCTCATGTCCTACGACGACCCACAACGCCCGTGGAGGAAGCTTACCC
TTTGGCACGCTATCAAACCCTGCCCTTTTGGATATCCGGTTCCCGGATGT
TTCCCAGCATGGGCAAGGGCTGCATCTCATGTCCTACGACGACCCACAAC
GCCCGTGGAGGAAGCTTACCCTTTGGCACGCTATCAAACCCTCCGCCGGG
AGCCAAGCGGCGGAGGAAGAGGAGGCAGCGGTGAACGGGGGCTCGCGATC
TCTGGGAAGGGCGCAGACAACCAACCTCACCTCCACGACCTACATGCAAA
CGTATGTCATCATGAAGCCCACGGGAACGGAGGCGTTCGGCACCAGCAAC
GCCTACCGGGATGTACTGTTCAGCCGCCGGGAGCCAAGCGGCGGAGGAAG
AGGAGGCAGCGGTGAACGGGGGCTCGCGATCTCTGGGAAGGGCGCAGACA
ACCAACCTCACCTCCACGACCTACATGCAAACGTATGTCATCATGAAGCC
CACGGGAACGGAGGCGTTCGGCACCAGCAACGCCTACCGGGATGTACTGT
TCAGGTTTGGAAGCTGGTGCTACAGTGGAACCGTGCAGCTGACTCCCACC
CTGGCGCTAGCGGATATTCCACACGTCATCCCGGCCCTGCGTATGCAGCA
GAGCAAGTTGGATTTTATGTGCGACGTCTCGCAGGTTTGGAAGCTGGTGC
TACAGTGGAACCGTGCAGCTGACTCCCACCCTGGCGCTAGCGGATATTCC
ACACGTCATCCCGGCCCTGCGTATGCAGCAGAGCAAGTTGGATTTTATGT
GCGACGTCTCGCAGGTTCCATCCAAATCTCCCTTCGCGGCCCCTCTGGAG
CGCATGCAAGCGCTGATGCCCCTCATGGAGGAGGAGGTTGCTGCCTCCGA
AGAGGTGTTGACTGATCTCTTGGATAAGCTCTCCGATATGGTTCCATCCA
AATCTCCCTTCGCGGCCCCTCTGGAGCGCATGCAAGCGCTGATGCCCCTC
ATGGAGGAGGAGGTTGCTGCCTCCGAAGAGGTGTTGACTGATCTCTTGGA
TAAGCTCTCCGATATGGGGCTGGAGGACAGCGTGTCGTCTTGGTTCGACG
GTGACAGCATGCAGAGCTTCTTCGAGTTTCAGGGGCTGGAGGACAGCGTG
TCGTCTTGGTTCGACGGTGACAGCATGCAGAGCTTCTTCGAGTTTCAGAC
GGCACCCACGGCGGACACAAAAGAAGCGTTTCGGGGGGTAGATCTGGTCG
CTAGCAAGTCCTACTCCGCCCGGGGCGTGGTGACGATCGGAATCTGGTTC
GGGGACACGTACTACGTCATGCTCGGAGACGGGGGCGAGGAGCAGCCGTT
GCTGGATTCCAGACGGCACCCACGGCGGACACAAAAGAAGCGTTTCGGGG
GGTAGATCTGGTCGCTAGCAAGTCCTACTCCGCCCGGGGCGTGGTGACGA
TCGGAATCTGGTTCGGGGACACGTACTACGTCATGCTCGGAGACGGGGGC
GAGGAGCAGCCGTTGCTGGATTCCAGGTTTCCAAACGTGTCGACAAAGGG
GCGGGGCTATCAGATCCGCGCTATGACAGAGGGGCCGGAAGGGTGGGAGG
AGCTGAGGAAGGTGTCGGTGTGGCAGACGACGGCGGCGCTGCAGCAGGAG
ATGGAAGCAAAGATGATTAAGGCAAGACAAGGTTTCCAAACGTGTCGACA
AAGGGGCGGGGCTATCAGATCCGCGCTATGACAGAGGGGCCGGAAGGGTG
GGAGGAGCTGAGGAAGGTGTCGGTGTGGCAGACGACGGCGGCGCTGCAGC
AGGAGATGGAAGCAAAGATGATTAAGGCAAGACAAGAAAAAGAGAGCGAA
GAGAGGCGGGTGGCGGGTGGCGACCTTGATGTGGAGGGGCAGGAGGATGG
CGGGGAAGAACACGCCAAGGCGACCACGACGATGGCGGTTGGGGGAGCCG
CAACCAGTGAGATGGGGGGGTCGAGAAGCGGCGGCCGAGCAGCGGCGGCG
GTGGGAGGGAGCGGTGGGTTCCCGGGCGAAAAAGAGAGCGAAGAGAGGCG
GGTGGCGGGTGGCGACCTTGATGTGGAGGGGCAGGAGGATGGCGGGGAAG
AACACGCCAAGGCGACCACGACGATGGCGGTTGGGGGAGCCGCAACCAGT
GAGATGGGGGGGTCGAGAAGCGGCGGCCGAGCAGCGGCGGCGGTGGGAGG
GAGCGGTGGGTTCCCGGGCGCGTTATCCGGTGCCACAGGCGGGGGGAGCG
CACTGGCTCAACCAAAGGATTTAAGGGTGGGAGGGGGAGGGGGCCGGGGC
GTCGGTGTGGTTGGGGCAGAAAGGAGCGATCACGACGACAGACCTGAGCG
AGGAGCGGGGAGCAAGCAGGCGAAGAGGCCTGGGGAGGCAGACCCGTCTC
GCGAGCGTAGCATCGCGTTATCCGGTGCCACAGGCGGGGGGAGCGCACTG
GCTCAACCAAAGGATTTAAGGGTGGGAGGGGGAGGGGGCCGGGGCGTCGG
TGTGGTTGGGGCAGAAAGGAGCGATCACGACGACAGACCTGAGCGAGGAG
CGGGGAGCAAGCAGGCGAAGAGGCCTGGGGAGGCAGACCCGTCTCGCGAG
CGTAGCATCGGCCTCGAGGCCGGAAGCAAGTACGGCGGCGGCGGTGGACC
CTTGGCCGTCTCGCCAACTTCGGCCTCCGCCGGACCCAAGTCTGAGTCGG
CGCTCGGCATGGAACGTCATCACGCCGCCGCGAAAGCGCTGACCAGTACC
AAGGCCTCGAGGCCGGAAGCAAGTACGGCGGCGGCGGTGGACCCTTGGCC
GTCTCGCCAACTTCGGCCTCCGCCGGACCCAAGTCTGAGTCGGCGCTCGG
CATGGAACGTCATCACGCCGCCGCGAAAGCGCTGACCAGTACCAAGGTCG
CCCTTCCACACCACCTTTCACCAATGGCTGGCTTGGAAGACAAGCTCAAA
AAGATGCGCACGGACATGCAGAACGAGAGCGGGGACGCCCCGTGGGATGC
ATTCGGCCGACCACGCACTGCTCTCCTAGGGGCCAAGCAGCACAAATGAG
TCGCCCTTCCACACCACCTTTCACCAATGGCTGGCTTGGAAGACAAGCTC
AAAAAGATGCGCACGGACATGCAGAACGAGAGCGGGGACGCCCCGTGGGA
TGCATTCGGCCGACCACGCACTGCTCTCCTAGGGGCCAAGCAGCACAAAT
GA
back to top