mRNA_S-firma_M_contig9507.20496.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9507.20496.1
Unique NamemRNA_S-firma_M_contig9507.20496.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: D8LH12_ECTSI (Zn-dependent peptidase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH12_ECTSI)

HSP 1 Score: 359 bits (921), Expect = 1.300e-123
Identity = 187/217 (86.18%), Postives = 202/217 (93.09%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLADQPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFLAVLEGSSVAVSEFLSRLPEETEGAASNTAPLSDQLKLLEDKDEGFVVPTQVS 651
            MMETGTS+MDRVQLSRRIGSQTGGVYATFLADQPSAGGAVADPGALKQYLFLRGKAVSDKV             A+LDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTY+NTVKDML+EAEN+WPKML RLQRVRATLLSKK+FL+VL+GSS AVSEFLSRLPEETEGAA+NTAPL++Q+KLL++KDEGFVVPTQV+
Sbjct:    1 MMETGTSEMDRVQLSRRIGSQTGGVYATFLADQPSAGGAVADPGALKQYLFLRGKAVSDKVXXXXXXXXXXXXXAHLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYVNTVKDMLDEAENDWPKMLKRLQRVRATLLSKKQFLSVLDGSSEAVSEFLSRLPEETEGAATNTAPLAEQVKLLQEKDEGFVVPTQVN 217          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A6H5LB25_9PHAE (M16C_associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB25_9PHAE)

HSP 1 Score: 375 bits (963), Expect = 6.210e-120
Identity = 196/224 (87.50%), Postives = 211/224 (94.20%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLADQPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFL-------AVLEGSSVAVSEFLSRLPEETEGAASNTAPLSDQLKLLEDKDEGFVVPTQVS 651
            MMETGTS MDRVQLSRRIGSQTGG+YATFLADQPSAGGAVADPGALKQYLFLRGKAV+DKVP MLSIM DV+TDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTY+NTVKDML+EAEN+WPKML RLQRVRATLLSKK+FL       +VL+GSS AVSEFLSRLPEETEGA +NTAPL++Q+KLLE+KDEGFVVPTQV+
Sbjct:  669 MMETGTSKMDRVQLSRRIGSQTGGIYATFLADQPSAGGAVADPGALKQYLFLRGKAVADKVPDMLSIMFDVMTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYVNTVKDMLDEAENDWPKMLKRLQRVRATLLSKKQFLVNLTGDKSVLDGSSEAVSEFLSRLPEETEGAVTNTAPLAEQVKLLEEKDEGFVVPTQVN 892          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A835YY54_9STRA (Metalloenzyme, LuxS/M16 peptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY54_9STRA)

HSP 1 Score: 199 bits (505), Expect = 6.340e-55
Identity = 106/229 (46.29%), Postives = 160/229 (69.87%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLAD-QPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFLA-------VLEGSSVAVSEFLSRLPEETEGAASNTAPLSDQLKLLEDKDEGFVVPTQVSKYAG 663
            ++ETG   MDRV+L+R IG+QTGGVY T L   +   GG +A    +  YLFLRGKAVS K P +L I+  V+T+A LDSQQR +E+LKE+KARL +SI GSGHS+A+ R+E+RYT++GYL E+ GG++ + TVK +L+ AE++WP +LARL+++RA+++++   L        VL+ ++ A+S F++ +P   EG  S++   + +  L+  ++EGF V TQV+ Y G
Sbjct:  658 LLETGAGSMDRVELTRHIGTQTGGVYCTSLTGTKMGGGGVIASSDDVVGYLFLRGKAVSAKTPELLDIVRTVVTEARLDSQQRAIEILKETKARLDASIVGSGHSYASMRIESRYTLEGYLNEISGGISSVETVKSVLKMAEDDWPALLARLEKIRASIVTRNNLLINLTGDQEVLDAAAPAISNFINSIPGAGEGVVSHSN-WAAEANLIPARNEGFAVQTQVN-YVG 884          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A7S2RFS8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFS8_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.370e-47
Identity = 107/246 (43.50%), Postives = 149/246 (60.57%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGG----VYATFLADQPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKK-----FL------AVLEGSSVAVSEFLSRLPEETEGAASN----------TAPLSDQLKLLEDKDEGFVVPTQVSKYAG 663
            M + G  ++  ++LSR+IG+ TGG    ++ T +  +    G V+D   +   L L+GKA +DK+  + SI   +LT ANLDSQ++V+EMLKESK+ L S IQGSGHSFANTR+ +RYT  GY+ E   G+TY+N+VK MLEEAE +WP  LARL+++R T+L  +      FL      AV++G    V  FL  LP + +G+A            T   ++ +K     DEGFVVPTQVS Y G
Sbjct:  686 MKDNGAGELSDIELSRKIGTHTGGAGVGLFTTTIRSETEEEGTVSDGNHMLTKLTLQGKATTDKIDELFSIFSLMLTKANLDSQKKVIEMLKESKSGLESGIQGSGHSFANTRMSSRYTPAGYIDEKMSGITYLNSVKIMLEEAEKDWPTFLARLEKMRDTILDNETCRNGMFLDITGEKAVMDGIQSNVESFLENLPGDAKGSALIDFHNEEHPWLTQAKTEMVKNAPIADEGFVVPTQVS-YVG 930          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A7S2V8U1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8U1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.120e-47
Identity = 99/230 (43.04%), Postives = 148/230 (64.35%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLADQP-SAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFLA-------VLEGSSVAVSEFLSRLPEETEGAASNTAPLSDQL-KLLEDKDEGFVVPTQVSKYAG 663
            + + GTS++DRV L R+IG+ TGG+ A+F  DQ  ++GG V+DP  +  +LF+RGK V  K+  +  ++ D+L DA LD+QQRV+E+LK+S A   SS+  SGHSFA +RL+ARYT   Y+ E+ GG++YI T+K + E+AE +WP +LARL+ +R  LLSK   L        VL+ +   ++ F+ ++P          AP   ++  LL  ++E FVVPTQV+ Y G
Sbjct:  664 LKDVGTSELDRVALDRKIGTHTGGISASFSVDQGYTSGGKVSDPSDVNGHLFVRGKCVVSKIDMLFGLVNDILADAELDNQQRVLELLKQSMAGYQSSVLSSGHSFAASRLDARYTTSDYIDEMTGGISYIETLKTLTEQAEKDWPSLLARLEGIRDKLLSKAGMLINLTADQEVLDAAKEPMASFIGKVPSR------EVAPQRWEVGSLLPVENEAFVVPTQVN-YVG 886          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A7S1XMW9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMW9_9STRA)

HSP 1 Score: 176 bits (446), Expect = 5.680e-47
Identity = 108/235 (45.96%), Postives = 148/235 (62.98%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLAD--QPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFLAVLEG------SSVAVSE-FLSRLPEE-----TEGAASNTAPLSDQLKLLEDKDEGFVVPTQVSKYAG 663
            ++E GT  MD   ++RRIG+ TGGV A  L D  +  AG AVA    +  YLFLRGKAV DK+P + SI  D+ TD NLD Q RV+EML+E++A + SS+  SGHS+A TRL AR T  G L E  GG++Y+ TVK++LE+AEN+WP +LARL+ ++  ++     +  L G      S+  V+E F + LP++      EG  + T  LS  ++ L D DEG VVPTQV+ Y G
Sbjct:  611 LLECGTKSMDETAMTRRIGTHTGGVRAALLRDLVEDPAGAAVAGDE-IVHYLFLRGKAVPDKIPELFSIFKDIFTDVNLDRQSRVLEMLRETRASMESSVVTSGHSYAATRLAARTTGLGVLREKVGGISYLETVKELLEQAENDWPALLARLEAIQKKIVDADALIVNLTGDKEVLGSATPVAESFAAGLPKQGKVAFPEGRTTRTVDLSG-MERLPDVDEGLVVPTQVN-YVG 842          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A7R9U9I1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9I1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.220e-46
Identity = 109/235 (46.38%), Postives = 146/235 (62.13%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLAD---QPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFLAVLEG------SSVAVSE-FLSRLPEET--EGAASNTAPLSD--QLKLLEDKDEGFVVPTQVSKYAG 663
            ++E GT+  D   L+RRIG  TGGV +  L D    P   G   +   +  YLFLRGKAV DKV  + +IM D+LTD NLD Q RV+EML+E+KA + SSI  SGH+FA +RL A  T  G L E  GGVTY+NTV+++LE+AENEWP +L+RLQ+++ TLL+    +  L G      +SV V+E F + LP++   + AA  + P  D   +  L    EG VVPTQV+ Y G
Sbjct:  168 LLECGTNKEDETTLTRRIGRHTGGVRSAILRDLVEHPE--GKCVEGDEIVHYLFLRGKAVPDKVSELFAIMKDILTDVNLDRQSRVIEMLRETKASMESSIVTSGHAFAASRLAAHDTGFGVLREQTGGVTYLNTVRELLEQAENEWPSLLSRLQKIQETLLNSNTLVVNLTGDKEVLSASVPVAETFATDLPKKASVDVAADRSVPTLDLRDVPRLPAVSEGLVVPTQVN-YVG 399          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A7S4MIS0_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MIS0_9STRA)

HSP 1 Score: 173 bits (439), Expect = 5.240e-46
Identity = 106/247 (42.91%), Postives = 149/247 (60.32%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLA----DQPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFL-----------AVLEGSSVAVSEFLSRLP------EETEGAASNTAPLSDQLKLLEDK-----DEGFVVPTQVSKYAG 663
            ++ETG  D+  VQLSRR+G  TGG+ A+ L     ++     A +D   +   LFLRGK+ +DK   + S+   +LTDANLDS +++VE+L+E+K R+ SS+Q +GHS+ANTRL +RYT  GY+GE  GG+TY++TVK++L+ AEN+WP +LARL+ +R+ LL + K              V+E  +  V  FLS LP      E+ +   S   P   Q K          DEGFVVPTQVS Y G
Sbjct:  705 LLETGAGDLSDVQLSRRMGIHTGGISASTLMVPVFEEGQDESAASDGTKMITKLFLRGKSTADKAGELFSLYNLILTDANLDSPKKIVEILRETKTRMESSVQSAGHSYANTRLASRYTPSGYIGEKMGGITYLDTVKELLDAAENDWPSVLARLEGIRSALLKQTKCRDGMILDITGDKRVMETIAPEVESFLSNLPGDAAPSEKFQDFYSEDHPWVTQAKSEMSAAAPLVDEGFVVPTQVS-YVG 950          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A7R9U8K2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8K2_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.790e-45
Identity = 109/235 (46.38%), Postives = 146/235 (62.13%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLAD---QPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFLAVLEG------SSVAVSE-FLSRLPEET--EGAASNTAPLSD--QLKLLEDKDEGFVVPTQVSKYAG 663
            ++E GT+  D   L+RRIG  TGGV +  L D    P   G   +   +  YLFLRGKAV DKV  + +IM D+LTD NLD Q RV+EML+E+KA + SSI  SGH+FA +RL A  T  G L E  GGVTY+NTV+++LE+AENEWP +L+RLQ+++ TLL+    +  L G      +SV V+E F + LP++   + AA  + P  D   +  L    EG VVPTQV+ Y G
Sbjct:  687 LLECGTNKEDETTLTRRIGRHTGGVRSAILRDLVEHPE--GKCVEGDEIVHYLFLRGKAVPDKVSELFAIMKDILTDVNLDRQSRVIEMLRETKASMESSIVTSGHAFAASRLAAHDTGFGVLREQTGGVTYLNTVRELLEQAENEWPSLLSRLQKIQETLLNSNTLVVNLTGDKEVLSASVPVAETFATDLPKKASVDVAADRSVPTLDLRDVPRLPAVSEGLVVPTQVN-YVG 918          
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Match: A0A448Z7F8_9STRA (M16C_associated domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7F8_9STRA)

HSP 1 Score: 170 bits (430), Expect = 8.390e-45
Identity = 104/246 (42.28%), Postives = 149/246 (60.57%), Query Frame = 1
Query:    1 MMETGTSDMDRVQLSRRIGSQTGGVYATFLAD----QPSAGGAVADPGALKQYLFLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQGSGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLARLQRVRATLLSKKKFL-----------AVLEGSSVAVSEFLSRLPEETEGAASNT---------APLSDQL-KLLEDKDEGFVVPTQVSKYAG 663
            MMETG  + D+V LSRRIG+ TGG+  T L      + S+   V D   L+  L +RGKA SD V  + ++M  VLTDAN DSQ RVVEMLKE+KA + + I   GH   NTR++ARY V GY+ E+ GG+  ++TV+ +L++A+N+WP +LARL+ +R+T+L++                VLE    +V +FL+ LP +++G              AP+   + +L+  KDEGFV+PTQVS Y G
Sbjct:  680 MMETGAGEYDQVALSRRIGTYTGGLGVTTLTTAVHPEGSSQKTVIDGNHLQSKLLVRGKATSDNVGELFALMKTVLTDANFDSQSRVVEMLKETKAGMEAGIGAGGHQAINTRMKARYRVGGYIDEVMGGIAQLDTVRSLLDQAQNDWPSLLARLENMRSTILNENICRDGMVLDITGDKVVLEKVQPSVDQFLTDLPGKSDGEKLPNFYKDEHPWVAPIKKLMNELVPIKDEGFVLPTQVS-YVG 924          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9507.20496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH12_ECTSI1.300e-12386.18Zn-dependent peptidase (Partial) (Fragment) n=1 Ta... [more]
A0A6H5LB25_9PHAE6.210e-12087.50M16C_associated domain-containing protein n=1 Tax=... [more]
A0A835YY54_9STRA6.340e-5546.29Metalloenzyme, LuxS/M16 peptidase-like protein n=1... [more]
A0A7S2RFS8_9STRA2.370e-4743.50Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2V8U1_9STRA3.120e-4743.04Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1XMW9_9STRA5.680e-4745.96Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U9I1_9STRA1.220e-4646.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4MIS0_9STRA5.240e-4642.91Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7R9U8K2_9STRA1.790e-4546.38Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A448Z7F8_9STRA8.390e-4542.28M16C_associated domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9507contigS-firma_M_contig9507:120..3491 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score360.5
Seed ortholog evalue5.8e-97
Seed eggNOG ortholog2880.D8LH12
KEGG koko:K06972
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010035,GO:0010038,GO:0010467,GO:0016485,GO:0016787,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048046,GO:0050896,GO:0051604,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1026@1,KOG2019@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZn-dependent peptidase
Ec32 orthologEc-06_010810.1
Exons5
Model size699
Cds size699
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9507.20496.1prot_S-firma_M_contig9507.20496.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9507 120..3491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828785.2719617-CDS-S-firma_M_contig9507:119..2841622828785.2719617-CDS-S-firma_M_contig9507:119..284Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 120..284 +
1697105161.1639767-CDS-S-firma_M_contig9507:119..2841697105161.1639767-CDS-S-firma_M_contig9507:119..284Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 120..284 +
1622828785.2921793-CDS-S-firma_M_contig9507:827..9351622828785.2921793-CDS-S-firma_M_contig9507:827..935Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 828..935 +
1697105161.1764848-CDS-S-firma_M_contig9507:827..9351697105161.1764848-CDS-S-firma_M_contig9507:827..935Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 828..935 +
1622828785.3087616-CDS-S-firma_M_contig9507:1580..16451622828785.3087616-CDS-S-firma_M_contig9507:1580..1645Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 1581..1645 +
1697105161.1881406-CDS-S-firma_M_contig9507:1580..16451697105161.1881406-CDS-S-firma_M_contig9507:1580..1645Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 1581..1645 +
1622828785.323617-CDS-S-firma_M_contig9507:2262..24191622828785.323617-CDS-S-firma_M_contig9507:2262..2419Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 2263..2419 +
1697105161.205714-CDS-S-firma_M_contig9507:2262..24191697105161.205714-CDS-S-firma_M_contig9507:2262..2419Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 2263..2419 +
1622828785.3396246-CDS-S-firma_M_contig9507:3287..34911622828785.3396246-CDS-S-firma_M_contig9507:3287..3491Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 3288..3491 +
1697105161.2175212-CDS-S-firma_M_contig9507:3287..34911697105161.2175212-CDS-S-firma_M_contig9507:3287..3491Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9507 3288..3491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9507.20496.1

>prot_S-firma_M_contig9507.20496.1 ID=prot_S-firma_M_contig9507.20496.1|Name=mRNA_S-firma_M_contig9507.20496.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=233bp
MMETGTSDMDRVQLSRRIGSQTGGVYATFLADQPSAGGAVADPGALKQYL
FLRGKAVSDKVPAMLSIMLDVLTDANLDSQQRVVEMLKESKARLASSIQG
SGHSFANTRLEARYTVDGYLGELQGGVTYINTVKDMLEEAENEWPKMLAR
LQRVRATLLSKKKFLAVLEGSSVAVSEFLSRLPEETEGAASNTAPLSDQL
KLLEDKDEGFVVPTQVSKYAGGGPPPPPSSVTP
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mRNA from alignment at S-firma_M_contig9507:120..3491+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9507.20496.1 ID=mRNA_S-firma_M_contig9507.20496.1|Name=mRNA_S-firma_M_contig9507.20496.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3372bp|location=Sequence derived from alignment at S-firma_M_contig9507:120..3491+ (Sphaerotrichia firma Sfir_13m male)
ATGATGGAGACCGGCACCTCGGACATGGACCGCGTGCAGCTGTCCCGCCG CATCGGCAGCCAGACGGGGGGCGTCTACGCCACCTTCCTGGCCGACCAGC CGTCCGCCGGGGGCGCCGTGGCTGACCCGGGGGCGCTCAAGCAGTACCTC TTCCTCCGCGGAAAGGTGAGGTTGTTTTGGGCCACTACTTTGTGGTGGAT CGGGTGGATTTGGGGCTGTTTGTTGAGCTCGTGGCGGTGGGGGGGAGAGG AGGGTCAAAGTGATGGTATTTTAGGGGTCAAGGGGGTCTGTTTTGGAGAC CTTTACGGTGTGCGGAGTTTAACTGGGGTGGGGTGTGCGTACCTCTCCGT CCCCCGCGGATTGGTGGGATGGGTTTACAGGGCGGGAAGGAGGCAGCGCC GGCTTGCGGATGGACGTAGCCCCACTCGCTCTCCATTGCCACGGCGGTGG TATACTAGTGTGACCCCTTGTGGGTCGTCTAGCTATCGTGGTCGTAGTGG AGGATAGGGGCCAGTGACGCACACGACAGAAACACAAATGGGAGGGAAAA AAATAAATATATTTATCGCCTCCGTCCGTCTGTCTCCTCGCCTTCTTCAC ACCTCCCACGCTCCTCCTTTTTGTTCTGTTCGTGCGGTGGGACTGCGCGA ACGGTCTTTCGCCGCCGTTGGTTGACCCGCAAAAACGAACGCGAATGAAT GCGGACAGGCGGTGTCGGACAAGGTGCCGGCCATGCTCTCCATCATGTTG GACGTGCTGACCGACGCTAACCTCGACAGCCAGCAGAGGGTCGTCGAGAT GCTCAAGGAGTCCAAGGTGCGGTGCGGCGGGATTGTGTTTGTGGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGCAAGGTGCGGCGCGATTGTGTTCGTG TGTGTGTGTGTGCAAGGTGCGGTGGGATTGTGTTTGTGGTGTGTGTATGT GTGTGTGCGTGTGCAAGGTGCGGTGCGATTATGTTTGTGGTGTGTGTGTG TGTGTGTGTGCAAGGTGCGGTGCGATTGTGTGTGTGTGTGTGTGTGTGTG TGCAAGGTGCGGTGCAATTGTGTGTGTGTGTGTGTGCAAGGTGCGGTGCG ATTGTGTTTGTGGTTGAACAAAAATGTAATGTACACTAGAAACACTCAGG TGTGTGTGTGCGTGTGCAAGGTGCGGTGCGATTGTGTTTGTGATTAAACA AAAATATACTGTACACCAGAAACACTGGTGTGTGTGTGTGTGTGTGTGTG TGAAGGGTAGATTCCACCATCATTTTTTCGGGAACTGCAGTAGTACCGTA TGAACGCAGGTTGAGTAGTAATGGGTTTGCCGTTTAAGGTTTGGGTTTGC CGTTTAAGAGACGATGCAAAAACCAATAATTGAACGTCTTTTCTTCTTCG CCTACGCCTGCTGTGCGTGTGCGTGTGCGCGTTGCGAAATGGTTGAAAAA ACGCCTCGCAGGCCCGGCTTGCGTCATCCATCCAGGGATCAGGCCACTCG TTCGCGAACACCCGCCTAGAGGCCAGGTGCGTGGAGAAGAAAGAGGCGTC GATGGGGGGGTGGGGGTGGGGGTGGGAGTAATTGCTCCCCTAGGACATTG CCTGTTTCGCCCTTCCGTGCTGTTGTGTGCTCGCGTGCGATGCGTGTTGT AATCATATAGTGGCATGCTTTGACGTGACACACGAAGTAGCATGATGCGA TAGAGTGACGGGTTTGACGGCCGAAACGCGTGTTGTATTGTCATTCAAGG CGTGTGCATGCGCCGCGCACAAGGGGGCGCTTCTGCACAAGCCTTTAAAA TTTTCTACATTCGTCAGCCGTATACGTCCGTCCTGTGAATTAAGTCGTTC CAGGGGGACTGTTGTATACACACAACCCTCCCCGTCCCAACCAACAGCAA CGCCTTTTTATCGCGGAAAGCGTCAAGCCCCGCGTGGAACGCTCCTTCCT ACCTTGCGCCTTCTGGTTCACGGAAACCAACCACGTTCGTGACCGAAGAT CAACTCATCAACTCATCAACCGTCTTGTAAAAAGTATGTTCCGGCTGATA ACCAATACACGCCCCCAACCCTCCCGCGCGCACAACAATGCGCGCGCTCG CGAATCGAATCGAATCGAATCGCCCCGTCTGCGGTGAATGAAGGTACACG GTGGACGGCTACCTCGGCGAGCTCCAGGGTGGCGTGACGTACATCAACAC GGTCAAGGACATGCTGGAGGAGGCCGAGAACGAGTGGCCCAAGATGCTGG CCCGCCTGCAGCGAGTTCGCGCCACGCTCCTCTCCAAGAAGAAGTTCCTC GTCAACCTCACCGGAGACCAGGTGCGGTGCGGTGACGGGGCGGGGGGGCT CCGGTGCGGACACAGGGCGGGGGGGGGGAGCGGTCCGGTGCTCCGGTTGT GATGTCACGAAATCTTGCTTTCGGAGGATTGGTCGGGATAAAAAAGCAGT ATTTTTTTTAACACCACAGCAGTCGGCTGGCTCCTACTATAAAGCAGAGT AAGAGGTGCGAATAGCAAGGGTGAACACACGACACACCATGTGGTATCCA TTTTGATGCAGTCGGGGGGCGGCAGCGTGCAGTCGCATCGATACGGTAAA GGAAGGTACGTAGAGGAGGCACACGCGGGCGCGGTGCGGAGACGGGGCGT TCCGAGAGAGGCGCGGTGGAGTACGTGGGCGTTGGTGTGCCTGGCGGGGC GGCTCGTTGTTGCGCCTCTCCCGACAAGAAGATGTGCCAACCCGAAGCCG TTTTTTTGTTTTTACGCCTACAGTACAGTACGTGCGTTGATTCCCTACCT CCTATGATATCGATTCCGTCCACAGGTGACGTGCTAAAGCAGTACCCGGC CCCGAGGGCATTTTTTTTTTTTTTTTTTTTTTTTTATCATGTCCTAAGGA CGTCAGCCGTCTCAGCCGTTTACGTCCAGCCTGTGAATAATGAGTCGGGG GACTGTTGTATATTTTTTATTTTATTTTTATTTTTCGTTTTATTTATTTT TTTGGTCTCTTGCGGTCGCGCCTGTCGCGCGGAGTTCGCTTCGGTGCCTG TGTTAGGTTAATCACGCGTTCTTCGTTCCCACGAGACAAATTTAATTTGC GTTCATGTTTTCGTTTTCTTCTCCCCCTTGTCGTTGTCCTGCGGTGCTGT CTGTGCCTTTGCCTGCAGGCCGTGCTGGAAGGGTCTAGCGTGGCGGTGTC GGAATTCCTGTCCCGCCTCCCCGAGGAGACCGAAGGAGCGGCGTCAAACA CGGCGCCCCTCTCGGACCAGCTCAAGCTCCTGGAGGACAAGGACGAGGGC TTCGTTGTGCCGACGCAGGTGAGTAAATACGCAGGAGGGGGTCCACCCCC CCCCCCATCGTCTGTGACCCCG
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Coding sequence (CDS) from alignment at S-firma_M_contig9507:120..3491+

>mRNA_S-firma_M_contig9507.20496.1 ID=mRNA_S-firma_M_contig9507.20496.1|Name=mRNA_S-firma_M_contig9507.20496.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1398bp|location=Sequence derived from alignment at S-firma_M_contig9507:120..3491+ (Sphaerotrichia firma Sfir_13m male)
ATGATGGAGACCGGCACCTCGGACATGGACCGCGTGCAGCTGTCCCGCCG
CATCGGCAGCCAGACGGGGGGCGTCTACGCCACCTTCCTGGCCGACCAGC
CGTCCGCCGGGGGCGCCGTGGCTGACCCGGGGGCGCTCAAGCAGTACCTC
TTCCTCCGCGGAAAGATGATGGAGACCGGCACCTCGGACATGGACCGCGT
GCAGCTGTCCCGCCGCATCGGCAGCCAGACGGGGGGCGTCTACGCCACCT
TCCTGGCCGACCAGCCGTCCGCCGGGGGCGCCGTGGCTGACCCGGGGGCG
CTCAAGCAGTACCTCTTCCTCCGCGGAAAGGCGGTGTCGGACAAGGTGCC
GGCCATGCTCTCCATCATGTTGGACGTGCTGACCGACGCTAACCTCGACA
GCCAGCAGAGGGTCGTCGAGATGCTCAAGGAGTCCAAGGCGGTGTCGGAC
AAGGTGCCGGCCATGCTCTCCATCATGTTGGACGTGCTGACCGACGCTAA
CCTCGACAGCCAGCAGAGGGTCGTCGAGATGCTCAAGGAGTCCAAGGCCC
GGCTTGCGTCATCCATCCAGGGATCAGGCCACTCGTTCGCGAACACCCGC
CTAGAGGCCAGGCCCGGCTTGCGTCATCCATCCAGGGATCAGGCCACTCG
TTCGCGAACACCCGCCTAGAGGCCAGGTACACGGTGGACGGCTACCTCGG
CGAGCTCCAGGGTGGCGTGACGTACATCAACACGGTCAAGGACATGCTGG
AGGAGGCCGAGAACGAGTGGCCCAAGATGCTGGCCCGCCTGCAGCGAGTT
CGCGCCACGCTCCTCTCCAAGAAGAAGTTCCTCGTACACGGTGGACGGCT
ACCTCGGCGAGCTCCAGGGTGGCGTGACGTACATCAACACGGTCAAGGAC
ATGCTGGAGGAGGCCGAGAACGAGTGGCCCAAGATGCTGGCCCGCCTGCA
GCGAGTTCGCGCCACGCTCCTCTCCAAGAAGAAGTTCCTCGCCGTGCTGG
AAGGGTCTAGCGTGGCGGTGTCGGAATTCCTGTCCCGCCTCCCCGAGGAG
ACCGAAGGAGCGGCGTCAAACACGGCGCCCCTCTCGGACCAGCTCAAGCT
CCTGGAGGACAAGGACGAGGGCTTCGTTGTGCCGACGCAGGTGAGTAAAT
ACGCAGGAGGGGGTCCACCCCCCCCCCCATCGTCTGTGACCCCGGCCGTG
CTGGAAGGGTCTAGCGTGGCGGTGTCGGAATTCCTGTCCCGCCTCCCCGA
GGAGACCGAAGGAGCGGCGTCAAACACGGCGCCCCTCTCGGACCAGCTCA
AGCTCCTGGAGGACAAGGACGAGGGCTTCGTTGTGCCGACGCAGGTGAGT
AAATACGCAGGAGGGGGTCCACCCCCCCCCCCATCGTCTGTGACCCCG
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